HHsearch alignment for GI: 254780406 and conserved domain: COG1187
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=492.41 Aligned_cols=237 Identities=39% Similarity=0.617 Sum_probs=220.6
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCC-CEEEECCEECCCCCCEEEEECCCCCEEEECCCC
Q ss_conf 7344788999886877899999998698699999924068780799-979999989225564389602787515631443
Q gi|254780406|r 12 TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMST-DHIEVDGVPLRKAERTRLWLYHKPIGLVTTHSD 90 (354)
Q Consensus 12 ~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~-d~v~vdg~~i~~~~~~~~~~~~KP~g~~~~~~~ 90 (354)
T Consensus 1 ~~~RL~K~La~~G~~SRr~ae~lI~~G~V~VnG~v~~~~~~~v~~~~~~i~v~g~~~~~~~~~~y~llnKP~G~v~s~~D 80 (248)
T COG1187 1 DSMRLNKFLAEAGVGSRREAEKLIEEGRVTVNGKVATLGGVVVDPDDDVVEVDGKRIELKEERVYLLLNKPRGYVSSTED 80 (248)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEECCCCEEECCCCCEEEECCEEEECCCCCEEEEEECCCCEEECCCC
T ss_conf 95206899987477788999999973987889999224776727987689989988112666469999899876926668
Q ss_pred CCCCCCCCEEECC---CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 3336442101102---3432002665543323202223676410001234457404775211245564678887400000
Q gi|254780406|r 91 PDGRSTVFDNLPS---IFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVI 167 (354)
Q Consensus 91 ~~~~~~~~~~~~~---~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~ 167 (354)
T Consensus 81 ~~gr~tv~D~lp~~~~~~~~~~pvGRLD~dTeGLLLLTnDG~la~rL~~P~~~~~K~Y~v~v~g~~~~~~l~~l~~Gv~l 160 (248)
T COG1187 81 DEGRPTVFDLLPERLPRKKRLFPVGRLDKDTEGLLLLTNDGELAHRLMHPSSEVEKEYLVRVEGPVTEEDLEKLRKGVTL 160 (248)
T ss_pred CCCCCEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCEE
T ss_conf 89981600025543466663334266577771279995787898875288889977999999258998999998578386
Q ss_pred CCEEEECCC-EEEEECCC-CEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECCCC--CCCCEEECCHHHHHH
Q ss_conf 876750343-03640268-80799999951842899999998398686889758705451875--547488679999987
Q gi|254780406|r 168 QGICYGDMQ-VTLDTQKG-SNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTL--LAGSTREVSKKILRE 243 (354)
Q Consensus 168 ~~~~~~~~~-~~~~~~~~-~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~~L--~~G~~r~l~~~e~~~ 243 (354)
T Consensus 161 ~d~~~~~~~~~~l~~~~~~~~s~~~itl~EGrnrQVRRm~~a~G~~V~~L~R~r~G~l~L~~L~l~~G~~R~L~~~E~~~ 240 (248)
T COG1187 161 DDGETKPAKPASLEKEPGKNNSWLRITLTEGRNRQVRRMFEAVGLEVLRLKRIRIGPLSLGDLPLPPGEWRELTLEEIAQ 240 (248)
T ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCCCEEEECCHHHHHH
T ss_conf 67356601047898317887469999995784789999999849967489999870167289888882058998999999
Q ss_pred HHHHH
Q ss_conf 53210
Q gi|254780406|r 244 QLGPH 248 (354)
Q Consensus 244 l~~~~ 248 (354)
T Consensus 241 l~~~~ 245 (248)
T COG1187 241 LRKLV 245 (248)
T ss_pred HHHHH
T ss_conf 99875