HHsearch alignment for GI: 254780406 and conserved domain: PRK01528

>PRK01528 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.80  E-value=7.9e-05  Score=50.24  Aligned_cols=145  Identities=18%  Similarity=0.108  Sum_probs=83.9

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
T Consensus         3 ng~l~i~KP~g~TS~~vv~~vkk~----~--~~~KvGH~GTLDP~AtGvL~i~~g~--aTK~~~~~~~~~K~Y~~~~~~G   74 (293)
T PRK01528          3 NYWLNIYKPRGISSAKLVSIVKKI----L--GKVKIGHAGTLDVEAEGILPLAVGE--ATKLIQLLIDAKKTYIFTVKFG   74 (293)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCEEEEEEEEEC
T ss_conf             758998779999989999999998----4--8980576867887570158999786--6503378657980699999978


Q ss_pred             C-------------------CHHHHHHHHHHH--------------HCCCE------------EEECCCE-----EEEEC
Q ss_conf             5-------------------646788874000--------------00876------------7503430-----36402
Q gi|254780406|r  153 V-------------------DQDKLNLLKKGI--------------VIQGI------------CYGDMQV-----TLDTQ  182 (354)
Q Consensus       153 ~-------------------~~~~~~~~~~g~--------------~~~~~------------~~~~~~~-----~~~~~  182 (354)
T Consensus        75 ~~TdT~D~eG~ii~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraY~lAR~G~~vel~~R~v~I~~l~ll~~  154 (293)
T PRK01528         75 KQTDSGDYAGKVIATKDYIPSQEEAYAVCSKFIGNVTQIPPAFSALKVNGVRAYKLAREGKEVELKPRNITIYDLKCLNF  154 (293)
T ss_pred             CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCHHHHHHHHCCCEEECCCEEEEEEEEEEEEE
T ss_conf             84798886775874157899999999999857782799088899620067609999866972442767999999897640


Q ss_pred             CCCE--EEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             6880--79999995184289999999839------868688975870545187
Q gi|254780406|r  183 KGSN--AWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       183 ~~~~--~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
T Consensus       155 ~~~~~~~~f~v~CskG--TYIRSLa~Dlg~~Lg~~a~~~~LrRt~~G~F~~~~  205 (293)
T PRK01528        155 DEKNATATYYTECSKG--TYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEEN  205 (293)
T ss_pred             CCCCCEEEEEEEECCC--EEHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf             4778669999997897--05378999999985985687244876773878688