HHsearch alignment for GI: 254780406 and conserved domain: PRK01528
>PRK01528 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.80 E-value=7.9e-05 Score=50.24 Aligned_cols=145 Identities=18% Similarity=0.108 Sum_probs=83.9
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ 152 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~ 152 (354)
T Consensus 3 ng~l~i~KP~g~TS~~vv~~vkk~----~--~~~KvGH~GTLDP~AtGvL~i~~g~--aTK~~~~~~~~~K~Y~~~~~~G 74 (293)
T PRK01528 3 NYWLNIYKPRGISSAKLVSIVKKI----L--GKVKIGHAGTLDVEAEGILPLAVGE--ATKLIQLLIDAKKTYIFTVKFG 74 (293)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCEEEEEEEEEC
T ss_conf 758998779999989999999998----4--8980576867887570158999786--6503378657980699999978
Q ss_pred C-------------------CHHHHHHHHHHH--------------HCCCE------------EEECCCE-----EEEEC
Q ss_conf 5-------------------646788874000--------------00876------------7503430-----36402
Q gi|254780406|r 153 V-------------------DQDKLNLLKKGI--------------VIQGI------------CYGDMQV-----TLDTQ 182 (354)
Q Consensus 153 ~-------------------~~~~~~~~~~g~--------------~~~~~------------~~~~~~~-----~~~~~ 182 (354)
T Consensus 75 ~~TdT~D~eG~ii~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraY~lAR~G~~vel~~R~v~I~~l~ll~~ 154 (293)
T PRK01528 75 KQTDSGDYAGKVIATKDYIPSQEEAYAVCSKFIGNVTQIPPAFSALKVNGVRAYKLAREGKEVELKPRNITIYDLKCLNF 154 (293)
T ss_pred CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCHHHHHHHHCCCEEECCCEEEEEEEEEEEEE
T ss_conf 84798886775874157899999999999857782799088899620067609999866972442767999999897640
Q ss_pred CCCE--EEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 6880--79999995184289999999839------868688975870545187
Q gi|254780406|r 183 KGSN--AWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 183 ~~~~--~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
T Consensus 155 ~~~~~~~~f~v~CskG--TYIRSLa~Dlg~~Lg~~a~~~~LrRt~~G~F~~~~ 205 (293)
T PRK01528 155 DEKNATATYYTECSKG--TYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEEN 205 (293)
T ss_pred CCCCCEEEEEEEECCC--EEHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 4778669999997897--05378999999985985687244876773878688