HHsearch alignment for GI: 254780406 and conserved domain: PRK01851
>PRK01851 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.97 E-value=4.3e-05 Score=51.91 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=90.2
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC-
Q ss_conf 3896027875156314433336442101102343200266554332320222367641000123445740477521124-
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG- 151 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~- 151 (354)
T Consensus 17 ~G~l~idKP~G~TS~~vv~~vk~----~~--~~kKvGH~GTLDP~AtGvL~v~~G--~aTK~~~~~~~~~K~Y~~~~~lG 88 (310)
T PRK01851 17 DGVLLLDKPVGLSSNDALIRAKR----LL--LAKKAGHTGTLDPLASGLLPLCFG--EATKFSQDLLEADKTYEATMRLG 88 (310)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----HH--CCCCCCCCCCCCCCCCCEEEEEEC--HHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 78999705998998999999999----85--888457786779734040689978--87733177576980899999989
Q ss_pred ------------------CCCHHHHHHHHHHHHC--------------CCE--------------EEECCC---EEEEEC
Q ss_conf ------------------5564678887400000--------------876--------------750343---036402
Q gi|254780406|r 152 ------------------QVDQDKLNLLKKGIVI--------------QGI--------------CYGDMQ---VTLDTQ 182 (354)
Q Consensus 152 ------------------~~~~~~~~~~~~g~~~--------------~~~--------------~~~~~~---~~~~~~ 182 (354)
T Consensus 89 ~~TdT~D~~G~v~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~GkrlY~lAR~G~~ve~~~R~v~I~~i~l~~~ 168 (310)
T PRK01851 89 VRTTTGDAEGEVLDTRPVSCDRAAVEAALARFVGEIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRRVTIRALDLLAC 168 (310)
T ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHEEECCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEC
T ss_conf 86777787787720367999999999999967751676597068344458878999857886055028999999999723
Q ss_pred CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC-CCCCCE
Q ss_conf 688079999995184289999999839------868688975870545187-554748
Q gi|254780406|r 183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT-LLAGST 233 (354)
Q Consensus 183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~-L~~G~~ 233 (354)
T Consensus 169 ~~~~~~~~v~CSkGTY--IRsLa~Dig~~Lg~~a~l~~LrRt~~G~f~~~~a~~Le~l 224 (310)
T PRK01851 169 ALPDVTFRVTCSKGTY--VRTLAEDIGEALGCGAHLTMLRRTGVGALTLEHAVTLDAL 224 (310)
T ss_pred CCCCEEEEEEECCCEE--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHCCCHHHH
T ss_conf 7982899999889616--6999999999869856982419667877266877089999