HHsearch alignment for GI: 254780406 and conserved domain: PRK01851

>PRK01851 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.97  E-value=4.3e-05  Score=51.91  Aligned_cols=151  Identities=17%  Similarity=0.155  Sum_probs=90.2

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC-
Q ss_conf             3896027875156314433336442101102343200266554332320222367641000123445740477521124-
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG-  151 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~-  151 (354)
T Consensus        17 ~G~l~idKP~G~TS~~vv~~vk~----~~--~~kKvGH~GTLDP~AtGvL~v~~G--~aTK~~~~~~~~~K~Y~~~~~lG   88 (310)
T PRK01851         17 DGVLLLDKPVGLSSNDALIRAKR----LL--LAKKAGHTGTLDPLASGLLPLCFG--EATKFSQDLLEADKTYEATMRLG   88 (310)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH----HH--CCCCCCCCCCCCCCCCCEEEEEEC--HHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             78999705998998999999999----85--888457786779734040689978--87733177576980899999989


Q ss_pred             ------------------CCCHHHHHHHHHHHHC--------------CCE--------------EEECCC---EEEEEC
Q ss_conf             ------------------5564678887400000--------------876--------------750343---036402
Q gi|254780406|r  152 ------------------QVDQDKLNLLKKGIVI--------------QGI--------------CYGDMQ---VTLDTQ  182 (354)
Q Consensus       152 ------------------~~~~~~~~~~~~g~~~--------------~~~--------------~~~~~~---~~~~~~  182 (354)
T Consensus        89 ~~TdT~D~~G~v~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~GkrlY~lAR~G~~ve~~~R~v~I~~i~l~~~  168 (310)
T PRK01851         89 VRTTTGDAEGEVLDTRPVSCDRAAVEAALARFVGEIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRRVTIRALDLLAC  168 (310)
T ss_pred             CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHEEECCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEC
T ss_conf             86777787787720367999999999999967751676597068344458878999857886055028999999999723


Q ss_pred             CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC-CCCCCE
Q ss_conf             688079999995184289999999839------868688975870545187-554748
Q gi|254780406|r  183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT-LLAGST  233 (354)
Q Consensus       183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~-L~~G~~  233 (354)
T Consensus       169 ~~~~~~~~v~CSkGTY--IRsLa~Dig~~Lg~~a~l~~LrRt~~G~f~~~~a~~Le~l  224 (310)
T PRK01851        169 ALPDVTFRVTCSKGTY--VRTLAEDIGEALGCGAHLTMLRRTGVGALTLEHAVTLDAL  224 (310)
T ss_pred             CCCCEEEEEEECCCEE--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHCCCHHHH
T ss_conf             7982899999889616--6999999999869856982419667877266877089999