HHsearch alignment for GI: 254780406 and conserved domain: PRK02193
>PRK02193 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.97 E-value=3.4e-05 Score=52.56 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=89.6
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC---
Q ss_conf 96027875156314433336442101102343200266554332320222367641000123445740477521124---
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG--- 151 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~--- 151 (354)
T Consensus 2 illi~KP~G~TS~~vv~~vkk----~--~~~kKvGH~GTLDP~AtGvL~v~~G~--aTK~~~~~~~~~K~Y~~~~~lG~~ 73 (279)
T PRK02193 2 ITLLYKPKKISSFKFIRQFSK----T--NLIKKIGHAGTLDPLATGLLLVATDE--DTKLLDYLDQKTKTYLAKIQLGFW 73 (279)
T ss_pred EEEEECCCCCCHHHHHHHHHH----H--HCCCCCCCCCCCCCCCEEEEEEEECH--HHHHCHHHCCCCCEEEEEEEECCC
T ss_conf 899989998998999999999----8--39995361746798674479999786--651264554578269999996775
Q ss_pred -----------------CCCHHHHHHHHHHHHCCCEEE--------------------------ECCCE-----EEEECC
Q ss_conf -----------------556467888740000087675--------------------------03430-----364026
Q gi|254780406|r 152 -----------------QVDQDKLNLLKKGIVIQGICY--------------------------GDMQV-----TLDTQK 183 (354)
Q Consensus 152 -----------------~~~~~~~~~~~~g~~~~~~~~--------------------------~~~~~-----~~~~~~ 183 (354)
T Consensus 74 TdT~D~eG~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySA~Kv~GkrlY~lAR~g~~ve~~~r~v~I~~~~l~~~~ 153 (279)
T PRK02193 74 STTYDSEGQIINVSSNIKVTKDNLEQALNRFSGSQKQVPPVFSAKKVNGKRAYHYARQGKQIELKPIEIKISKIILINFD 153 (279)
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCEEECCCEEEEEEEEEEEEEC
T ss_conf 77656777456304899999999999999667878982888996231563589898668543056478999999999841
Q ss_pred --CCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCCCCCCCEEECCHHHHHH
Q ss_conf --88079999995184289999999839------8686889758705451875547488679999987
Q gi|254780406|r 184 --GSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGTLLAGSTREVSKKILRE 243 (354)
Q Consensus 184 --~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~ 243 (354)
T Consensus 154 ~~~~~~~~~v~CSkGTY--IRsLa~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~~~~----~l~~~~l~~ 215 (279)
T PRK02193 154 EKLQNCVFMWQVSRGTY--IRSLIDDIGKMLKTRAYMDDLERTKIGNLDKNFLNQ----SLKPQDIID 215 (279)
T ss_pred CCCCEEEEEEEECCCCC--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHHHH----HCCHHHHCC
T ss_conf 78974999999899768--999999999986984798353977786859668761----089778568