HHsearch alignment for GI: 254780406 and conserved domain: PRK05389
>PRK05389 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.64 E-value=0.00021 Score=47.60 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=86.7
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ 152 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~ 152 (354)
T Consensus 13 ~G~l~idKP~G~TS~~vv~~vkk~----~--~~kKvGH~GTLDP~AtGvL~i~~G~--aTk~~~~~~~~~K~Y~~~~~lG 84 (305)
T PRK05389 13 SGWLILDKPAGMTSTEAVSKVKWL----F--DAQKAGHAGTLDPLASGVLPIALGE--ATKTVPYVMDGTKRYRFTVAWG 84 (305)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCEEEEEEEEEC
T ss_conf 779998249999989999999998----5--8885677867798660238899887--7623367656880799999984
Q ss_pred -------------------CCHHHHHHHHHHHH--------------CCCE--------------EEECCCE---EEEEC
Q ss_conf -------------------56467888740000--------------0876--------------7503430---36402
Q gi|254780406|r 153 -------------------VDQDKLNLLKKGIV--------------IQGI--------------CYGDMQV---TLDTQ 182 (354)
Q Consensus 153 -------------------~~~~~~~~~~~g~~--------------~~~~--------------~~~~~~~---~~~~~ 182 (354)
T Consensus 85 ~~TdT~D~~G~v~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~Gkr~Y~lAR~G~~ve~~~R~v~I~~i~ll~~ 164 (305)
T PRK05389 85 EERDTDDLEGEVTATSDKRPTDEEIRALLPAFTGVIMQVPPQFSAIKIDGERAYDLAREGETVELPPRPVEIDRLTLVDR 164 (305)
T ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC
T ss_conf 31335666885456258997599999999968761787288789644368019999877982135637999999899733
Q ss_pred -CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC-CCCCCE
Q ss_conf -688079999995184289999999839------868688975870545187-554748
Q gi|254780406|r 183 -KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT-LLAGST 233 (354)
Q Consensus 183 -~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~-L~~G~~ 233 (354)
T Consensus 165 ~~~~~~~f~v~CSkGT--YIRsLa~Dig~~Lg~~a~l~~LrRt~vG~f~~~~a~~le~l 221 (305)
T PRK05389 165 PDADHAVFEVECGKGT--YVRSLARDMGRALGCYGHIAALRRTWVGPFTEEDMITLDKL 221 (305)
T ss_pred CCCCEEEEEEEECCCE--EHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHCCCHHHH
T ss_conf 7899899999978963--76998999998759847984338446878287996689999