HHsearch alignment for GI: 254780406 and conserved domain: PRK05389

>PRK05389 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.64  E-value=0.00021  Score=47.60  Aligned_cols=151  Identities=17%  Similarity=0.169  Sum_probs=86.7

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
T Consensus        13 ~G~l~idKP~G~TS~~vv~~vkk~----~--~~kKvGH~GTLDP~AtGvL~i~~G~--aTk~~~~~~~~~K~Y~~~~~lG   84 (305)
T PRK05389         13 SGWLILDKPAGMTSTEAVSKVKWL----F--DAQKAGHAGTLDPLASGVLPIALGE--ATKTVPYVMDGTKRYRFTVAWG   84 (305)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH----H--CCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHCCCCEEEEEEEEEC
T ss_conf             779998249999989999999998----5--8885677867798660238899887--7623367656880799999984


Q ss_pred             -------------------CCHHHHHHHHHHHH--------------CCCE--------------EEECCCE---EEEEC
Q ss_conf             -------------------56467888740000--------------0876--------------7503430---36402
Q gi|254780406|r  153 -------------------VDQDKLNLLKKGIV--------------IQGI--------------CYGDMQV---TLDTQ  182 (354)
Q Consensus       153 -------------------~~~~~~~~~~~g~~--------------~~~~--------------~~~~~~~---~~~~~  182 (354)
T Consensus        85 ~~TdT~D~~G~v~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAiKv~Gkr~Y~lAR~G~~ve~~~R~v~I~~i~ll~~  164 (305)
T PRK05389         85 EERDTDDLEGEVTATSDKRPTDEEIRALLPAFTGVIMQVPPQFSAIKIDGERAYDLAREGETVELPPRPVEIDRLTLVDR  164 (305)
T ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC
T ss_conf             31335666885456258997599999999968761787288789644368019999877982135637999999899733


Q ss_pred             -CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC-CCCCCE
Q ss_conf             -688079999995184289999999839------868688975870545187-554748
Q gi|254780406|r  183 -KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT-LLAGST  233 (354)
Q Consensus       183 -~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~-L~~G~~  233 (354)
T Consensus       165 ~~~~~~~f~v~CSkGT--YIRsLa~Dig~~Lg~~a~l~~LrRt~vG~f~~~~a~~le~l  221 (305)
T PRK05389        165 PDADHAVFEVECGKGT--YVRSLARDMGRALGCYGHIAALRRTWVGPFTEEDMITLDKL  221 (305)
T ss_pred             CCCCEEEEEEEECCCE--EHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHCCCHHHH
T ss_conf             7899899999978963--76998999998759847984338446878287996689999