HHsearch alignment for GI: 254780406 and conserved domain: PRK10475
>PRK10475 23S rRNA pseudouridine synthase F; Provisional.
Probab=100.00 E-value=0 Score=514.08 Aligned_cols=234 Identities=26% Similarity=0.394 Sum_probs=216.9
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCC--CCEEEEECCCCCEEEEC
Q ss_conf 6773447889998868778999999986986999999240687807999799999892255--64389602787515631
Q gi|254780406|r 10 NFTPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKA--ERTRLWLYHKPIGLVTT 87 (354)
Q Consensus 10 ~~~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~--~~~~~~~~~KP~g~~~~ 87 (354)
T Consensus 3 ~~~~~RL~K~LA~~G~~SRReAe~lI~~GrV~VNGk~v~-~g~~V~~~D~V~vdg~~i~~~~~~~~~yi~lnKP~G~v~t 81 (290)
T PRK10475 3 PDSSTRLNKYISESGICSRREADRYIEQGNVFINGKRAT-IGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVST 81 (290)
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEECCEECC-CCCCCCCCCEEEECCEECCCCCCCCEEEEEEECCCCCCCC
T ss_conf 988614999998777835999999998597898999957-9888699998999998912336676399999589870677
Q ss_pred CCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 44333364421011023432002665543323202223676410001234457404775211245564678887400000
Q gi|254780406|r 88 HSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVI 167 (354)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~ 167 (354)
T Consensus 82 ~~d~-~r~ti~d~l~~-~~rl~pVGRLD~dSeGLLlLTNDG~l~~~l~hP~~~i~K~Y~V~v~g~i~~~~l~~l~~Gv~i 159 (290)
T PRK10475 82 TEDG-ERDNIVDFVNH-SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPI 159 (290)
T ss_pred CCCC-CCCCEEECCCC-CCCEEECCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCEE
T ss_conf 7667-89864641477-563505046687776759985987999987357678955999998985899999998589656
Q ss_pred CCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 87675034303640268807999999518428999999983986868897587054518755474886799999875321
Q gi|254780406|r 168 QGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQLGP 247 (354)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~l~~~ 247 (354)
T Consensus 160 ~g~~~~~~~v~~~----~~~~~~i~L~EGknRqIRRm~~~~g~~V~~L~Ri~iG~i~L~~L~~G~wR~Lt~~Ei~~l~~~ 235 (290)
T PRK10475 160 LGTVTKKCKVKKE----APFVFRITLVQGLNRQIRRMCEHFGYEVTKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKL 235 (290)
T ss_pred CCEECCEEEEEEC----CCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCCEECCHHHHHHHHHH
T ss_conf 8886011499964----897899999868049999999985997817899998887858989987158999999999976
Q ss_pred HHH
Q ss_conf 000
Q gi|254780406|r 248 HLL 250 (354)
Q Consensus 248 ~~~ 250 (354)
T Consensus 236 ~~~ 238 (290)
T PRK10475 236 IEN 238 (290)
T ss_pred HHC
T ss_conf 534