HHsearch alignment for GI: 254780406 and conserved domain: PRK10700
>PRK10700 23S rRNA pseudouridylate synthase B; Provisional.
Probab=100.00 E-value=0 Score=520.41 Aligned_cols=240 Identities=39% Similarity=0.563 Sum_probs=222.1
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECC--CCEEEECCEECCCCCCE----EEEECCCCCEEE
Q ss_conf 734478899988687789999999869869999992406878079--99799999892255643----896027875156
Q gi|254780406|r 12 TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMS--TDHIEVDGVPLRKAERT----RLWLYHKPIGLV 85 (354)
Q Consensus 12 ~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~--~d~v~vdg~~i~~~~~~----~~~~~~KP~g~~ 85 (354)
T Consensus 1 m~eRL~K~LA~~G~~SRReae~lI~~GrV~VNG~v~~-lg~~v~~~~~~~V~vDG~~i~~~~~~~~~~~~l~l~KP~G~v 79 (291)
T PRK10700 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVKESAEQICRVLAYYKPEGEL 79 (291)
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCEECC-CCCEECCCCCCEEEECCEEEECCCCCCCCEEEEEEECCCEEE
T ss_conf 9179999999878943999999998694998999955-688265899988999999943245544301468998785775
Q ss_pred ECCCCCCCCCCCCEEECCC-CCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 3144333364421011023-432002665543323202223676410001234457404775211245564678887400
Q gi|254780406|r 86 TTHSDPDGRSTVFDNLPSI-FSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKG 164 (354)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g 164 (354)
T Consensus 80 ~T~~D~~~r~tV~dllp~~~~~rl~~VGRLD~dT~GLLLlTNDG~La~rL~hP~~~v~K~Y~V~v~g~i~~~~l~~l~~G 159 (291)
T PRK10700 80 CTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG 159 (291)
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCCEEECCCHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHCC
T ss_conf 46677557983778463223664556305788887728983877999862488679877999998887999999999769
Q ss_pred HHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEEC-CCCCCCCEEECCHHHHHH
Q ss_conf 0008767503430364026880799999951842899999998398686889758705451-875547488679999987
Q gi|254780406|r 165 IVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKKILRE 243 (354)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l-~~L~~G~~r~l~~~e~~~ 243 (354)
T Consensus 160 v~ledg~~~~~~i~~~~~~~~~~~~~i~L~EGrnrqIRRMf~~~G~~V~~LkRi~iG~i~L~~~Lp~G~wR~Lt~~Ev~~ 239 (291)
T PRK10700 160 VQLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 (291)
T ss_pred CEECCCEEEEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCCCEECCHHHHHH
T ss_conf 77678014679998844778857999999969688999999985997918899998776358999896771899999999
Q ss_pred HHHHHHHHC
Q ss_conf 532100000
Q gi|254780406|r 244 QLGPHLLEE 252 (354)
Q Consensus 244 l~~~~~~~~ 252 (354)
T Consensus 240 Lr~~v~l~~ 248 (291)
T PRK10700 240 LRELVELPP 248 (291)
T ss_pred HHHHCCCCC
T ss_conf 999819991