HHsearch alignment for GI: 254780406 and conserved domain: PRK10839

>PRK10839 16S rRNA pseudouridylate synthase A; Provisional.
Probab=100.00  E-value=0  Score=474.66  Aligned_cols=227  Identities=26%  Similarity=0.412  Sum_probs=208.2

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCCCCEEEEECCCCCEEEECCCCCCC
Q ss_conf             44788999886877899999998698699999924068780799979999989225564389602787515631443333
Q gi|254780406|r   14 QRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTRLWLYHKPIGLVTTHSDPDG   93 (354)
Q Consensus        14 ~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~~~~~~~~~~KP~g~~~~~~~~~~   93 (354)
T Consensus         1 mRL~K~La~~g~~SRR~ae~lI~~GrV~VNg~~v~~~~~~V~~~~~v~vdg~~i~~~~~~~y~~lnKP~G~v~s~~d~~~   80 (231)
T PRK10839          1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVKNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDH   80 (231)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCCEECCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             93789998878956999999998797999999914588084999869991958614668689999899875347889999


Q ss_pred             CCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEE--
Q ss_conf             644210110234320026655433232022236764100012344574047752112455646788874000008767--
Q gi|254780406|r   94 RSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGIC--  171 (354)
Q Consensus        94 ~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~~~~--  171 (354)
T Consensus        81 ~~~~~~l~~~~~~~l~~vGRLD~ds~GLlllTnDg~l~~~l~~P~~~i~k~Y~V~v~~~i~~~~l~~l~~Gv~i~~~~~~  160 (231)
T PRK10839         81 PTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL  160 (231)
T ss_pred             CCEEEECCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCEECCEECC
T ss_conf             72698637655563577004688987769976888999535187689978999998987999999999679698782311


Q ss_pred             EECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEEC-CCCCCCCEEECCHHHHHHH
Q ss_conf             503430364026880799999951842899999998398686889758705451-8755474886799999875
Q gi|254780406|r  172 YGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKKILREQ  244 (354)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l-~~L~~G~~r~l~~~e~~~l  244 (354)
T Consensus       161 ~~~~~v~~~----~~~~~~i~l~eGk~rqIRrmf~~~g~~V~~L~Ri~iG~i~L~~dL~~G~~R~Lt~~Ei~~l  230 (231)
T PRK10839        161 TKPAVLEVI----TPTQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGGITLDADLAPGEYRPLTEEEIASV  230 (231)
T ss_pred             EEEEEEEEC----CCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEEEECEECCCCCCCCCEEECCHHHHHHC
T ss_conf             603699984----8969999996687679999999859989899999990552389999975019999999742