HHsearch alignment for GI: 254780406 and conserved domain: PRK11180
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional.
Probab=99.97 E-value=3.8e-31 Score=215.99 Aligned_cols=215 Identities=20% Similarity=0.222 Sum_probs=165.6
Q ss_pred CCCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCE----------EC---CCCC
Q ss_conf 4466677344788999886-87789999999869869999992406878079997999998----------92---2556
Q gi|254780406|r 6 IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGV----------PL---RKAE 71 (354)
Q Consensus 6 ~~~~~~~~~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~----------~i---~~~~ 71 (354)
T Consensus 10 tV~~~~aG~RLD~fL~~~~~~~srs~i~k~ir~g~I~VNgk~v~k~~~~v~~GD~I~i~~~~~~~~~~~p~~~~l~IlyE 89 (325)
T PRK11180 10 TVSESQLGQRLDQALAELFPDYSRSRIKEWILDQRVLVNGKVINKPKEKVLGGEQVAIDAEIEEEARFEAQDIPLDIVYE 89 (325)
T ss_pred EECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 99910079739999997578889999999998698899999947821278899999981687763447722388518998
Q ss_pred CEEEEECCCCCEEEECCCCCCCCCCCCEEECCCC------CCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEE
Q ss_conf 4389602787515631443333644210110234------3200266554332320222367641000123--4457404
Q gi|254780406|r 72 RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF------SRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLR 143 (354)
Q Consensus 72 ~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k 143 (354)
T Consensus 90 D~~llVvnKP~Gl~vhp~~~~~~~tl~~~l~~~~~~~~~~~r~~iVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K 169 (325)
T PRK11180 90 DDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVEALQKREITR 169 (325)
T ss_pred CCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCE
T ss_conf 38899998899944767989888779999987532104787676664279997414664175999999999997388965
Q ss_pred EEEEEECCCCCHHHHHHH--HH-H-----H-HCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf 775211245564678887--40-0-----0-0087675034303640268807999999518428999999983986868
Q gi|254780406|r 144 VYRVRFHGQVDQDKLNLL--KK-G-----I-VIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNR 214 (354)
Q Consensus 144 ~Y~v~v~~~~~~~~~~~~--~~-g-----~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~ 214 (354)
T Consensus 170 ~Y~Alv~G~~~~~g~i~~pl~~~~~~~~~~~~~~~gk~A~T~~~vl~~~~~~slv~~~l~TGRtHQIRvHla~~G~PIvG 249 (325)
T PRK11180 170 EYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 (325)
T ss_pred EEEEEEEEEECCCCEEECCCCCCCCCCEEEEECCCCEEECCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEC
T ss_conf 99999810437996585420137766628997677702022101444358845799982758828999999987995637
Q ss_pred EEEEEECC
Q ss_conf 89758705
Q gi|254780406|r 215 LIRISYGP 222 (354)
Q Consensus 215 L~Rv~~G~ 222 (354)
T Consensus 250 --D~~YG~ 255 (325)
T PRK11180 250 --DQVYGG 255 (325)
T ss_pred --CCCCCC
T ss_conf --524688