HHsearch alignment for GI: 254780406 and conserved domain: PRK11180

>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional.
Probab=99.97  E-value=3.8e-31  Score=215.99  Aligned_cols=215  Identities=20%  Similarity=0.222  Sum_probs=165.6

Q ss_pred             CCCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCE----------EC---CCCC
Q ss_conf             4466677344788999886-87789999999869869999992406878079997999998----------92---2556
Q gi|254780406|r    6 IVQENFTPQRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGV----------PL---RKAE   71 (354)
Q Consensus         6 ~~~~~~~~~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~----------~i---~~~~   71 (354)
T Consensus        10 tV~~~~aG~RLD~fL~~~~~~~srs~i~k~ir~g~I~VNgk~v~k~~~~v~~GD~I~i~~~~~~~~~~~p~~~~l~IlyE   89 (325)
T PRK11180         10 TVSESQLGQRLDQALAELFPDYSRSRIKEWILDQRVLVNGKVINKPKEKVLGGEQVAIDAEIEEEARFEAQDIPLDIVYE   89 (325)
T ss_pred             EECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99910079739999997578889999999998698899999947821278899999981687763447722388518998


Q ss_pred             CEEEEECCCCCEEEECCCCCCCCCCCCEEECCCC------CCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEE
Q ss_conf             4389602787515631443333644210110234------3200266554332320222367641000123--4457404
Q gi|254780406|r   72 RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF------SRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLR  143 (354)
Q Consensus        72 ~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k  143 (354)
T Consensus        90 D~~llVvnKP~Gl~vhp~~~~~~~tl~~~l~~~~~~~~~~~r~~iVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K  169 (325)
T PRK11180         90 DDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVEALQKREITR  169 (325)
T ss_pred             CCCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCE
T ss_conf             38899998899944767989888779999987532104787676664279997414664175999999999997388965


Q ss_pred             EEEEEECCCCCHHHHHHH--HH-H-----H-HCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf             775211245564678887--40-0-----0-0087675034303640268807999999518428999999983986868
Q gi|254780406|r  144 VYRVRFHGQVDQDKLNLL--KK-G-----I-VIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNR  214 (354)
Q Consensus       144 ~Y~v~v~~~~~~~~~~~~--~~-g-----~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~  214 (354)
T Consensus       170 ~Y~Alv~G~~~~~g~i~~pl~~~~~~~~~~~~~~~gk~A~T~~~vl~~~~~~slv~~~l~TGRtHQIRvHla~~G~PIvG  249 (325)
T PRK11180        170 EYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG  249 (325)
T ss_pred             EEEEEEEEEECCCCEEECCCCCCCCCCEEEEECCCCEEECCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEC
T ss_conf             99999810437996585420137766628997677702022101444358845799982758828999999987995637


Q ss_pred             EEEEEECC
Q ss_conf             89758705
Q gi|254780406|r  215 LIRISYGP  222 (354)
Q Consensus       215 L~Rv~~G~  222 (354)
T Consensus       250 --D~~YG~  255 (325)
T PRK11180        250 --DQVYGG  255 (325)
T ss_pred             --CCCCCC
T ss_conf             --524688