HHsearch alignment for GI: 254780406 and conserved domain: PRK11394
>PRK11394 23S rRNA pseudouridine synthase E; Provisional.
Probab=100.00 E-value=0 Score=360.31 Aligned_cols=167 Identities=31% Similarity=0.529 Sum_probs=157.3
Q ss_pred CCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 56438960278751563144333364421011023432002665543323202223676410001234457404775211
Q gi|254780406|r 70 AERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRF 149 (354)
Q Consensus 70 ~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v 149 (354)
T Consensus 26 ~~p~r~illnKP~G~i~T~~D~~gR~tV~dllp~--~~l~pVGRLD~dSeGLLLlTNDG~la~~L~hP~~~i~K~Y~V~v 103 (207)
T PRK11394 26 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQV 103 (207)
T ss_pred CCCCEEEEEECCCCEEECCCCCCCCCCHHHHCCC--CCCEECCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 9998899998999858688899999767896885--67457777678987729980878999875256579778999999
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEE---------------CCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf 24556467888740000087675034303640---------------268807999999518428999999983986868
Q gi|254780406|r 150 HGQVDQDKLNLLKKGIVIQGICYGDMQVTLDT---------------QKGSNAWVTVGLREGKNREIKKVFEFFNWKVNR 214 (354)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~ 214 (354)
T Consensus 104 ~g~~~~~~l~~l~~Gv~i~dg~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~s~l~i~L~EGKnRqIRRmf~~~G~~V~~ 183 (207)
T PRK11394 104 EGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLR 183 (207)
T ss_pred CCCCCHHHHHHHHCCCEECCEEEEEEEEEEECCCCCCCCCCCCHHHCCCCCCCEEEEEEEECCCHHHHHHHHHCCCEEEE
T ss_conf 16899999999977978598476454899944742123457641110257865799999746359999999986997938
Q ss_pred EEEEEECCEECCCCCCCCEEECCH
Q ss_conf 897587054518755474886799
Q gi|254780406|r 215 LIRISYGPFQLGTLLAGSTREVSK 238 (354)
Q Consensus 215 L~Rv~~G~~~l~~L~~G~~r~l~~ 238 (354)
T Consensus 184 L~Ri~iG~l~L~~L~~G~~ReLTe 207 (207)
T PRK11394 184 LIRYAMGDYSLDNLANGEWREATD 207 (207)
T ss_pred EEEEEECCEECCCCCCCCCEECCC
T ss_conf 999998988739989988377969