HHsearch alignment for GI: 254780406 and conserved domain: PRK12565
>PRK12565 30S ribosomal protein S4; Provisional.
Probab=98.16 E-value=4.4e-06 Score=58.13 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEE
Q ss_conf 4478899988687-7899999998698699999924068780799979999989
Q gi|254780406|r 14 QRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVP 66 (354)
Q Consensus 14 ~RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~ 66 (354)
T Consensus 88 ~RLDnvv~R~gfa~t~~~ARQlV~Hghi~vng~kVdIPSy~vk~GDvI~vkeks 141 (197)
T PRK12565 88 CRLDNVVYRIGFASSIRQARQMVNHGHILVNGKKVNIPSYEVKVGDEITLREKS 141 (197)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCEEECCCCEEEECHHH
T ss_conf 866677113441057999866740788897998955887670699999973322