HHsearch alignment for GI: 254780406 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=98.03 E-value=6.4e-06 Score=57.09 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEEC
Q ss_conf 478899988687-78999999986986999999240687807999799999892
Q gi|254780406|r 15 RVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPL 67 (354)
Q Consensus 15 RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i 67 (354)
T Consensus 1 RLD~lLv~rgl~~sR~~Ak~lI~kG~V~VN~~~v~KP~~~v~~~~~i~l~~~~~ 54 (240)
T TIGR00478 1 RLDILLVKRGLVESREKAKRLILKGEVLVNKKKVDKPSALVDKDAKIELVQNPL 54 (240)
T ss_pred CCHHHHHHHCHHHHHHHHHHHHHCCCEEECCEEECCCCCEECCCCCEEEECCCC
T ss_conf 903677650114578999999873945555765208860441676034414777