HHsearch alignment for GI: 254780406 and conserved domain: cd02550
>cd02550 PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: Pseudouridine synthase, Rsu/Rlu family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli.
Probab=99.97 E-value=8.1e-31 Score=213.91 Aligned_cols=146 Identities=32% Similarity=0.469 Sum_probs=128.4
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCEEECCC-CCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 960278751563144333364421011023-4320026655433232022236764100012344574047752112455
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSI-FSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQV 153 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~ 153 (354)
T Consensus 1 iivvnKP~G~~~~~~~~~~~~~~~~~l~~~~~~~l~~vhRLDr~TSGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~g~~ 80 (154)
T cd02550 1 ILVLNKPSGLVCHPTDRDRDPTVVVRLDKLHGPRVHAAGRLDKDTSGLLLLTNDGRLQRRLTEPRREIEKEYLVTVRGEL 80 (154)
T ss_pred CEEEECCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_conf 99999999971858999999709999875179861371268999978567737989999998500565057999998727
Q ss_pred CHHHHHHHHHHH-------HCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf 646788874000-------0087675034303640268807999999518428999999983986868897587
Q gi|254780406|r 154 DQDKLNLLKKGI-------VIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISY 220 (354)
Q Consensus 154 ~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~ 220 (354)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~slv~~~l~TGR~HQIR~hl~~~G~PIl~l~R~ri 154 (154)
T cd02550 81 DEEGIEDLATVRRGRLSGLVDEGVPLAVTKVRVIGEHGGTGRLRLTLKTGRTHQIRRHCAAVGFPVLRLHRVRI 154 (154)
T ss_pred CHHHHEECCCCCCCCCEEEECCCCEECCCEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 85882444456424551266599620432889931479948999997988669999999986993956899879