HHsearch alignment for GI: 254780406 and conserved domain: cd02550

>cd02550 PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: Pseudouridine synthase, Rsu/Rlu family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli.
Probab=99.97  E-value=8.1e-31  Score=213.91  Aligned_cols=146  Identities=32%  Similarity=0.469  Sum_probs=128.4

Q ss_pred             EEECCCCCEEEECCCCCCCCCCCCEEECCC-CCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf             960278751563144333364421011023-4320026655433232022236764100012344574047752112455
Q gi|254780406|r   75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSI-FSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQV  153 (354)
Q Consensus        75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~  153 (354)
T Consensus         1 iivvnKP~G~~~~~~~~~~~~~~~~~l~~~~~~~l~~vhRLDr~TSGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~g~~   80 (154)
T cd02550           1 ILVLNKPSGLVCHPTDRDRDPTVVVRLDKLHGPRVHAAGRLDKDTSGLLLLTNDGRLQRRLTEPRREIEKEYLVTVRGEL   80 (154)
T ss_pred             CEEEECCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_conf             99999999971858999999709999875179861371268999978567737989999998500565057999998727


Q ss_pred             CHHHHHHHHHHH-------HCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf             646788874000-------0087675034303640268807999999518428999999983986868897587
Q gi|254780406|r  154 DQDKLNLLKKGI-------VIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISY  220 (354)
Q Consensus       154 ~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~  220 (354)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~slv~~~l~TGR~HQIR~hl~~~G~PIl~l~R~ri  154 (154)
T cd02550          81 DEEGIEDLATVRRGRLSGLVDEGVPLAVTKVRVIGEHGGTGRLRLTLKTGRTHQIRRHCAAVGFPVLRLHRVRI  154 (154)
T ss_pred             CHHHHEECCCCCCCCCEEEECCCCEECCCEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEC
T ss_conf             85882444456424551266599620432889931479948999997988669999999986993956899879