HHsearch alignment for GI: 254780406 and conserved domain: cd02554
>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.
Probab=100.00 E-value=0 Score=332.90 Aligned_cols=164 Identities=27% Similarity=0.435 Sum_probs=152.1
Q ss_pred EEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 89602787515631443333644210110234320026655433232022236764100012344574047752112455
Q gi|254780406|r 74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQV 153 (354)
Q Consensus 74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~ 153 (354)
T Consensus 1 vYillnKP~G~v~s~~~~-~~~~~~~~l~~~-~rl~~vGRLD~~s~GLLLlTNDg~l~~~L~hP~~~i~k~Y~V~~~~~i 78 (164)
T cd02554 1 VYIAYNKPVGIDCTLERA-DEDNIIDFVNPP-PRIFPIGRLDKDSEGLILLTNDGDLVNKILHADNNHEKEYLVTVNKPI 78 (164)
T ss_pred CEEEEECCCCEEECCCCC-CCCCEEEECCCC-CCEEECCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 999998999828387899-999669974886-777888678999856599957889997621998889629999995669
Q ss_pred CHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCE
Q ss_conf 64678887400000876750343036402688079999995184289999999839868688975870545187554748
Q gi|254780406|r 154 DQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGST 233 (354)
Q Consensus 154 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~~L~~G~~ 233 (354)
T Consensus 79 ~~~~l~~l~~Gi~i~~~~~~~~~v~~~~----~~~~~i~l~eGknrqIRrmf~~~g~~V~~L~Rv~~G~l~L~~L~~G~~ 154 (164)
T cd02554 79 TDEFIEGMSNGVVILGTVTKPCKVERLA----KDKFRIVLTQGLNRQIRRMCEALGYRVTDLKRVRIMNIELGDLAPGEW 154 (164)
T ss_pred CHHHHHHHHCCEEECCEEEECEEEEEEC----CCEEEEEEEECCCHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCC
T ss_conf 9999998747859898898021999947----984999999267489999999869988489999988989399899782
Q ss_pred EECCHHHHHH
Q ss_conf 8679999987
Q gi|254780406|r 234 REVSKKILRE 243 (354)
Q Consensus 234 r~l~~~e~~~ 243 (354)
T Consensus 155 R~Lt~~Eike 164 (164)
T cd02554 155 RPLTDAELFE 164 (164)
T ss_pred EECCHHHHCC
T ss_conf 6999899088