HHsearch alignment for GI: 254780406 and conserved domain: cd02556

>cd02556 PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like. This group is comprised of bacterial and eukaryotic proteins similar to E. coli RluB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluB makes psi2605 in 23S RNA. psi2605 has been detected in eubacteria but, not in eukarya and archea despite the presence of a precursor U at that site.
Probab=100.00  E-value=0  Score=348.09  Aligned_cols=165  Identities=50%  Similarity=0.815  Sum_probs=159.5

Q ss_pred             EEEECCCCCEEEECCCCCCCCCCCCEEECC-CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             896027875156314433336442101102-3432002665543323202223676410001234457404775211245
Q gi|254780406|r   74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPS-IFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
T Consensus         1 r~illnKP~G~v~s~~d~~~r~tv~dll~~~~~~rl~~vGRLD~ds~GLLLlTnDG~l~~~l~hP~~~i~k~Y~V~v~~~   80 (167)
T cd02556           1 RVLIYHKPEGLICTRKDPKGRPTVFDLLPKLGIPRWISVGRLDLNTEGLLLFTNDGELANRLMHPSNEIEREYAVRVFGQ   80 (167)
T ss_pred             CEEEEECCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCEEEEEEECCC
T ss_conf             98999899998978629988975789655335557236413895767859992783675764098778857999997589


Q ss_pred             CCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEEC-CCCCCC
Q ss_conf             5646788874000008767503430364026880799999951842899999998398686889758705451-875547
Q gi|254780406|r  153 VDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAG  231 (354)
Q Consensus       153 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l-~~L~~G  231 (354)
T Consensus        81 ~~~~~l~~l~~Gv~i~~~~~~~~~v~~~~~~~~~~~~~i~l~eGk~rqIRrmf~~~g~~V~~L~Ri~iG~l~l~~dL~~G  160 (167)
T cd02556          81 VTDEQLKSLKKGVELEDGFAGFKSIQLEGGEGKNSWYRVTLREGRNREVRRLWEAFGLQVSRLIRIRYGPIFLPGNLKRG  160 (167)
T ss_pred             CCHHHHHHHHCCCEECCEEEEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf             99999999877978799884006999962679967999999769468999999986998958999998885257898997


Q ss_pred             CEEECCH
Q ss_conf             4886799
Q gi|254780406|r  232 STREVSK  238 (354)
Q Consensus       232 ~~r~l~~  238 (354)
T Consensus       161 ~~R~LtP  167 (167)
T cd02556         161 QWEELPP  167 (167)
T ss_pred             CEEECCC
T ss_conf             4586989