HHsearch alignment for GI: 254780406 and conserved domain: cd02556
>cd02556 PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like. This group is comprised of bacterial and eukaryotic proteins similar to E. coli RluB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluB makes psi2605 in 23S RNA. psi2605 has been detected in eubacteria but, not in eukarya and archea despite the presence of a precursor U at that site.
Probab=100.00 E-value=0 Score=348.09 Aligned_cols=165 Identities=50% Similarity=0.815 Sum_probs=159.5
Q ss_pred EEEECCCCCEEEECCCCCCCCCCCCEEECC-CCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 896027875156314433336442101102-3432002665543323202223676410001234457404775211245
Q gi|254780406|r 74 RLWLYHKPIGLVTTHSDPDGRSTVFDNLPS-IFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ 152 (354)
Q Consensus 74 ~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~ 152 (354)
T Consensus 1 r~illnKP~G~v~s~~d~~~r~tv~dll~~~~~~rl~~vGRLD~ds~GLLLlTnDG~l~~~l~hP~~~i~k~Y~V~v~~~ 80 (167)
T cd02556 1 RVLIYHKPEGLICTRKDPKGRPTVFDLLPKLGIPRWISVGRLDLNTEGLLLFTNDGELANRLMHPSNEIEREYAVRVFGQ 80 (167)
T ss_pred CEEEEECCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCEEEEEEECCC
T ss_conf 98999899998978629988975789655335557236413895767859992783675764098778857999997589
Q ss_pred CCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEEC-CCCCCC
Q ss_conf 5646788874000008767503430364026880799999951842899999998398686889758705451-875547
Q gi|254780406|r 153 VDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAG 231 (354)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l-~~L~~G 231 (354)
T Consensus 81 ~~~~~l~~l~~Gv~i~~~~~~~~~v~~~~~~~~~~~~~i~l~eGk~rqIRrmf~~~g~~V~~L~Ri~iG~l~l~~dL~~G 160 (167)
T cd02556 81 VTDEQLKSLKKGVELEDGFAGFKSIQLEGGEGKNSWYRVTLREGRNREVRRLWEAFGLQVSRLIRIRYGPIFLPGNLKRG 160 (167)
T ss_pred CCHHHHHHHHCCCEECCEEEEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 99999999877978799884006999962679967999999769468999999986998958999998885257898997
Q ss_pred CEEECCH
Q ss_conf 4886799
Q gi|254780406|r 232 STREVSK 238 (354)
Q Consensus 232 ~~r~l~~ 238 (354)
T Consensus 161 ~~R~LtP 167 (167)
T cd02556 161 QWEELPP 167 (167)
T ss_pred CEEECCC
T ss_conf 4586989