HHsearch alignment for GI: 254780406 and conserved domain: cd02870
>cd02870 PseudoU_synth_RsuA_like Pseudouridine synthases are responsible for the synthesis of pseudouridine from uracil in ribosomal RNA. The RsuA subfamily includes Pseudouridine Synthase similar to Ribosomal small subunit pseudouridine 516 synthase. Most of the proteins in this family are bacterial proteins.
Probab=100.00 E-value=8.7e-39 Score=264.11 Aligned_cols=146 Identities=38% Similarity=0.583 Sum_probs=141.9
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 96027875156314433336442101102343200266554332320222367641000123445740477521124556
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVD 154 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~ 154 (354)
T Consensus 1 yi~lnKP~G~~~~~~~~~~~~tv~~ll~~~~~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~~~~~i~K~Y~a~v~g~~~ 80 (146)
T cd02870 1 YLLLNKPRGVVSTVRDPEGRPTVLDLLKDVGERLFPVGRLDYDTEGLLLLTNDGELANRLTHPRYGVEKTYLVKVRGVPS 80 (146)
T ss_pred CEEEECCCCCEECCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf 98999999828616699899857895430578672266689778765999579899998754035424699999902699
Q ss_pred HHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf 467888740000087675034303640268807999999518428999999983986868897587
Q gi|254780406|r 155 QDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISY 220 (354)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~ 220 (354)
T Consensus 81 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~l~v~l~tGR~hQIR~h~~~lg~pI~~L~Ri~i 146 (146)
T cd02870 81 EEELRRLRAGVELDDGKTAPAKVKVLSRDPKNTLLEVTLHEGRNRQVRRMFEAVGHPVLRLKRVRI 146 (146)
T ss_pred HHHHHHHHCCEECCCCEEEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 999999866645589887214899823789959999997899439999999984997967999979