HHsearch alignment for GI: 254780406 and conserved domain: pfam00849
>pfam00849 PseudoU_synth_2 RNA pseudouridylate synthase. Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA.
Probab=99.80 E-value=2.2e-20 Score=148.17 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=97.1
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCEEEC---CCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEEEEEEEE
Q ss_conf 9602787515631443333644210110---2343200266554332320222367641000123--4457404775211
Q gi|254780406|r 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLP---SIFSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLRVYRVRF 149 (354)
Q Consensus 75 ~~~~~KP~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k~Y~v~v 149 (354)
T Consensus 1 ~lvvnKP~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v 80 (151)
T pfam00849 1 YIVVNKPAGVPVHPTDLSDLLSLTELLLVAELGKFRLYPVHRLDRDTSGLLLLAKDGEAANKLNKLFPERKVEKEYLALV 80 (151)
T ss_pred CEEEECCCCCEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99999999985821899878628886555515997355851778888544786232688888999866535542899999
Q ss_pred CCCCCHHHHHHHHH----------HHHCCCEEEECCCEEEEEC---CCCEEEEEEEEEECCHHHHHHHHHH
Q ss_conf 24556467888740----------0000876750343036402---6880799999951842899999998
Q gi|254780406|r 150 HGQVDQDKLNLLKK----------GIVIQGICYGDMQVTLDTQ---KGSNAWVTVGLREGKNREIKKVFEF 207 (354)
Q Consensus 150 ~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~---~~~~~~~~v~l~eGr~~qIrr~~~~ 207 (354)
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~~~~slv~~~l~TGR~HQIRvhlas 151 (151)
T pfam00849 81 DGPEEEEGTIKAPIKKDKNKVPRRKKEELDGKKAVTHLRVLRSGSKIEDVSLVELELVTGRKHQIRAHLAA 151 (151)
T ss_pred ECCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHCC
T ss_conf 67778770898101136777727987569984242599998872568996999999672837999998669