HHsearch alignment of GI: 254780406 and MMDB domain: 1dm9_A_

>1dm9_A (A:) Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli}
Probab=99.77  E-value=1.5e-19  Score=142.56  Aligned_cols=122  Identities=13%  Similarity=0.060  Sum_probs=91.3

Q ss_pred             CCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEE--CCEECCCCCCEEEEECCCCC
Q ss_conf             446667734478899988687-789999999869869999992406878079997999--99892255643896027875
Q gi|254780406|r    6 IVQENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEV--DGVPLRKAERTRLWLYHKPI   82 (354)
Q Consensus         6 ~~~~~~~~~RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~v--dg~~i~~~~~~~~~~~~KP~   82 (354)
                      ++++...++||||||+.+++| ||++|++||+.|+|+|||++++ ++++|.++|.|.|  ++...... ...+...+++.
T Consensus         1 iv~~~~~g~RLDk~L~~~~~~~sR~~a~~li~~G~V~VNG~~~~-~s~~v~~gD~i~i~~~~~~~~~~-~~~~~~~~~~~   78 (133)
T 1dm9_A            1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVI-VKAITEQRRPA   78 (133)
T ss_dssp             ----CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECC-TTCBCCTTCEEEEEETTEEEEEE-ECEEESCCCCH
T ss_pred             CCCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEECC-CCCEECCCCEEEEEECCEEEEEE-EEEEEECCCCC
T ss_conf             99887764629999987867168999999998691888999734-58561599989998799865899-99876225673


Q ss_pred             EEEECCCCCC-----CCCCCCEEE-CCCCCCEECCCCCCC-CCCCEEEECCCCC
Q ss_conf             1563144333-----364421011-023432002665543-3232022236764
Q gi|254780406|r   83 GLVTTHSDPD-----GRSTVFDNL-PSIFSRVISVGRLDI-NTEGLLLLTNDGG  129 (354)
Q Consensus        83 g~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~vgRLD~-~t~GLlllTndg~  129 (354)
                      +..+......     ..+..+..+ .....++++|||||+ +|+|||+|||||.
T Consensus        79 ~~~~~~~ed~~~~v~~kp~~~~~~~~~~~~r~~~vgRLDk~~t~~ll~l~~dgs  132 (133)
T 1dm9_A           79 SEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKHGDS  132 (133)
T ss_dssp             HHHGGGEEECHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             035666323688711345777766522455788997868599999998755899