HHsearch alignment of GI: 254780406 and MMDB domain: 1dm9_A_
>1dm9_A (A:) Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli}
Probab=99.77 E-value=1.5e-19 Score=142.56 Aligned_cols=122 Identities=13% Similarity=0.060 Sum_probs=91.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEE--CCEECCCCCCEEEEECCCCC
Q ss_conf 446667734478899988687-789999999869869999992406878079997999--99892255643896027875
Q gi|254780406|r 6 IVQENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEV--DGVPLRKAERTRLWLYHKPI 82 (354)
Q Consensus 6 ~~~~~~~~~RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~v--dg~~i~~~~~~~~~~~~KP~ 82 (354)
++++...++||||||+.+++| ||++|++||+.|+|+|||++++ ++++|.++|.|.| ++...... ...+...+++.
T Consensus 1 iv~~~~~g~RLDk~L~~~~~~~sR~~a~~li~~G~V~VNG~~~~-~s~~v~~gD~i~i~~~~~~~~~~-~~~~~~~~~~~ 78 (133)
T 1dm9_A 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVI-VKAITEQRRPA 78 (133)
T ss_dssp ----CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECC-TTCBCCTTCEEEEEETTEEEEEE-ECEEESCCCCH
T ss_pred CCCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEECC-CCCEECCCCEEEEEECCEEEEEE-EEEEEECCCCC
T ss_conf 99887764629999987867168999999998691888999734-58561599989998799865899-99876225673
Q ss_pred EEEECCCCCC-----CCCCCCEEE-CCCCCCEECCCCCCC-CCCCEEEECCCCC
Q ss_conf 1563144333-----364421011-023432002665543-3232022236764
Q gi|254780406|r 83 GLVTTHSDPD-----GRSTVFDNL-PSIFSRVISVGRLDI-NTEGLLLLTNDGG 129 (354)
Q Consensus 83 g~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~vgRLD~-~t~GLlllTndg~ 129 (354)
+..+...... ..+..+..+ .....++++|||||+ +|+|||+|||||.
T Consensus 79 ~~~~~~~ed~~~~v~~kp~~~~~~~~~~~~r~~~vgRLDk~~t~~ll~l~~dgs 132 (133)
T 1dm9_A 79 SEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKHGDS 132 (133)
T ss_dssp HHHGGGEEECHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 035666323688711345777766522455788997868599999998755899