HHsearch alignment of GI: 254780406 and MMDB domain: 1ksk_A_1-58

>1ksk_A (A:1-58) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}
Probab=99.49  E-value=4.5e-14  Score=108.06  Aligned_cols=57  Identities=32%  Similarity=0.438  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECC
Q ss_conf             734478899988687789999999869869999992406878079997999998922
Q gi|254780406|r   12 TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLR   68 (354)
Q Consensus        12 ~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~   68 (354)
                      +.+|||||||+.++|||++|++||.+|+|+|||++|++++++|+++|.|+|||++|.
T Consensus         2 ~~~RLDk~L~~~~~~SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~i~g~~it   58 (58)
T 1ksk_A            2 SHXRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA   58 (58)
T ss_dssp             CCEEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTEEEC
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCCEECCCCEEEEEEEEEE
T ss_conf             840099999877896899999999889299999994668858078676997210565