HHsearch alignment of GI: 254780406 and MMDB domain: 1ksk_A_59-234
>1ksk_A (A:59-234) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}
Probab=100.00 E-value=2.1e-32 Score=223.47 Aligned_cols=174 Identities=24% Similarity=0.368 Sum_probs=158.9
Q ss_pred CCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 56438960278751563144333364421011023432002665543323202223676410001234457404775211
Q gi|254780406|r 70 AERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRF 149 (354)
Q Consensus 70 ~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v 149 (354)
||+..++++|||.|+.|+..+.....++.........++++|||||++|||||+||+|++.+.++.+....++|+|.+.|
T Consensus 2 Yed~~~ivvnKP~gl~~~~~~~~~~~~~~~l~~~~~~~~~~vhRLD~~TSGlli~ak~~~~~~~~~~~~~~~~k~y~~~v 81 (176)
T 1ksk_A 2 QHGPRYFXLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLXTDDGQWSHRITSPRHHCEKTYLVTL 81 (176)
T ss_dssp CCCCCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECC
T ss_conf 57857999989998505665554431000012444563656013885557558860586888877554238847998446
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECC-CC
Q ss_conf 24556467888740000087675034303640268807999999518428999999983986868897587054518-75
Q gi|254780406|r 150 HGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLG-TL 228 (354)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~-~L 228 (354)
.+.+..........++..+........... .....+|+++.+.+||+||||+||+++|++|..+.+.++|++.+. .|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~tGr~HQIR~h~~~~g~pI~gD~~Y~~~~~~~~~~l 159 (176)
T 1ksk_A 82 ESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTISEGRYHQVKRXFAAVGNHVVELHRERIGGITLDADL 159 (176)
T ss_dssp SSCCCTTHHHHHHHCCCCTTCSSCCCCCEE--EEEETTEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTC
T ss_pred CCCCCHHHHHHHHEEEEECCCEEEEEEEEE--ECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCC
T ss_conf 788887897775302563895755534684--037996899996359839999999987997989999998865047989
Q ss_pred CCCCEEECCHHHHHHHH
Q ss_conf 54748867999998753
Q gi|254780406|r 229 LAGSTREVSKKILREQL 245 (354)
Q Consensus 229 ~~G~~r~l~~~e~~~l~ 245 (354)
+.|+||+|+++|++.||
T Consensus 160 ~l~~~r~l~~~e~~~ll 176 (176)
T 1ksk_A 160 APGEYRPLTEEEIASVV 176 (176)
T ss_dssp CTTCEEECCHHHHTTCC
T ss_pred CCCCEEECCHHHHHHHC
T ss_conf 99751599999999659