HHsearch alignment of GI: 254780406 and MMDB domain: 1ksk_A_59-234

>1ksk_A (A:59-234) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}
Probab=100.00  E-value=2.1e-32  Score=223.47  Aligned_cols=174  Identities=24%  Similarity=0.368  Sum_probs=158.9

Q ss_pred             CCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             56438960278751563144333364421011023432002665543323202223676410001234457404775211
Q gi|254780406|r   70 AERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRF  149 (354)
Q Consensus        70 ~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v  149 (354)
                      ||+..++++|||.|+.|+..+.....++.........++++|||||++|||||+||+|++.+.++.+....++|+|.+.|
T Consensus         2 Yed~~~ivvnKP~gl~~~~~~~~~~~~~~~l~~~~~~~~~~vhRLD~~TSGlli~ak~~~~~~~~~~~~~~~~k~y~~~v   81 (176)
T 1ksk_A            2 QHGPRYFXLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLXTDDGQWSHRITSPRHHCEKTYLVTL   81 (176)
T ss_dssp             CCCCCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECC
T ss_conf             57857999989998505665554431000012444563656013885557558860586888877554238847998446


Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECC-CC
Q ss_conf             24556467888740000087675034303640268807999999518428999999983986868897587054518-75
Q gi|254780406|r  150 HGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLG-TL  228 (354)
Q Consensus       150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~-~L  228 (354)
                      .+.+..........++..+...........  .....+|+++.+.+||+||||+||+++|++|..+.+.++|++.+. .|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~tGr~HQIR~h~~~~g~pI~gD~~Y~~~~~~~~~~l  159 (176)
T 1ksk_A           82 ESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTISEGRYHQVKRXFAAVGNHVVELHRERIGGITLDADL  159 (176)
T ss_dssp             SSCCCTTHHHHHHHCCCCTTCSSCCCCCEE--EEEETTEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTTC
T ss_pred             CCCCCHHHHHHHHEEEEECCCEEEEEEEEE--ECCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCC
T ss_conf             788887897775302563895755534684--037996899996359839999999987997989999998865047989


Q ss_pred             CCCCEEECCHHHHHHHH
Q ss_conf             54748867999998753
Q gi|254780406|r  229 LAGSTREVSKKILREQL  245 (354)
Q Consensus       229 ~~G~~r~l~~~e~~~l~  245 (354)
                      +.|+||+|+++|++.||
T Consensus       160 ~l~~~r~l~~~e~~~ll  176 (176)
T 1ksk_A          160 APGEYRPLTEEEIASVV  176 (176)
T ss_dssp             CTTCEEECCHHHHTTCC
T ss_pred             CCCCEEECCHHHHHHHC
T ss_conf             99751599999999659