HHsearch alignment of GI: 254780406 and MMDB domain: 1v9k_A_
>1v9k_A (A:) Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli}
Probab=99.91 E-value=8.4e-27 Score=188.22 Aligned_cols=172 Identities=14% Similarity=0.074 Sum_probs=140.2
Q ss_pred CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCC--CCCEECCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCEEE
Q ss_conf 556438960278751563144333364421011023--432002665543323202223676410001234--4574047
Q gi|254780406|r 69 KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI--FSRVISVGRLDINTEGLLLLTNDGGLARVLELP--STQWLRV 144 (354)
Q Consensus 69 ~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p--~~~~~k~ 144 (354)
.+++..|+++|||.|+.|+..+.....++++.+... ..++++|||||++||||||+|+|+++++.|.++ ...+.|+
T Consensus 5 iyed~~~~vvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~a~~l~~~~~~~~v~K~ 84 (228)
T 1v9k_A 5 XYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGXQKD 84 (228)
T ss_dssp EEECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred EEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 99689999999999986389989953699999986778765316640464322136752357999999999874034543
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC------------CEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEE
Q ss_conf 752112455646788874000008------------76750343036402688079999995184289999999839868
Q gi|254780406|r 145 YRVRFHGQVDQDKLNLLKKGIVIQ------------GICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKV 212 (354)
Q Consensus 145 Y~v~v~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V 212 (354)
|++.|.+.++.........+.... +.......+.........+++++.+.+||+||||.||+++|++|
T Consensus 85 Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGR~HQIR~h~a~~g~PI 164 (228)
T 1v9k_A 85 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPI 164 (228)
T ss_dssp EEEEEESCCCTTCCEECCCEEEEECTTSCEEEEECTTSBCCCEEEEEEEECSSEEEEEEEESSCCTTHHHHHHHHTTCCB
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCEEECHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 21034686422357522330000110101555207888422155005553587379999947573578888888549721
Q ss_pred EEEEEEEECCEECCCCCCCC---EEECCHHH
Q ss_conf 68897587054518755474---88679999
Q gi|254780406|r 213 NRLIRISYGPFQLGTLLAGS---TREVSKKI 240 (354)
Q Consensus 213 ~~L~Rv~~G~~~l~~L~~G~---~r~l~~~e 240 (354)
++.++..++.+.+..++.|+ |+.|...+
T Consensus 165 vgD~~Y~~~~~~~~~~~~~~~~~~~~Lha~~ 195 (228)
T 1v9k_A 165 AFDDRYGDREFDRQLTEAGTGLNRLFLHAAA 195 (228)
T ss_dssp TTCTTTSCHHHHHHHHHTTCCCCSCCEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHCCC
T ss_conf 3577413000002333202686237887150