HHsearch alignment of GI: 254780406 and MMDB domain: 1vio_A_58-243
>1vio_A (A:58-243) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}
Probab=99.97 E-value=1.3e-30 Score=212.17 Aligned_cols=178 Identities=24% Similarity=0.333 Sum_probs=161.3
Q ss_pred CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 55643896027875156314433336442101102343200266554332320222367641000123445740477521
Q gi|254780406|r 69 KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVR 148 (354)
Q Consensus 69 ~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~ 148 (354)
.+|+..||++|||.|+.|+..+.....++.........++++|+|||++||||||||+|++.+.+++.+...++|+|.+.
T Consensus 1 ~yed~~~ivinKP~gl~~~~~~~~~~~~~~~l~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~k~y~~~ 80 (186)
T 1vio_A 1 WIEEGQYFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVT 80 (186)
T ss_dssp SSCCCCEEEEEECTTCBSSCCC--CCBGGGGSCTTGGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEE
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 22221035540258864333443201454200245331365402124012213787417753200011124552011259
Q ss_pred ECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECC-C
Q ss_conf 124556467888740000087675034303640268807999999518428999999983986868897587054518-7
Q gi|254780406|r 149 FHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLG-T 227 (354)
Q Consensus 149 v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~-~ 227 (354)
|.+.+..+.......++...+.......... .....+++++.+.+||+||||+||+++|++|.+.+++++|++.++ .
T Consensus 81 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~tGr~hQIR~h~a~lg~pIvgD~~yg~~~~~~~~~ 158 (186)
T 1vio_A 81 LADPVEENYSAACAEGILLRGEKEPTKPAKL--EILDDYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDES 158 (186)
T ss_dssp ESSCCCTTHHHHHHHCCCCTTCSSCCCCCEE--EECSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECCTT
T ss_pred EEEECCHHHHHHHHCCEECCCCCCCEEEEEE--CCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCC
T ss_conf 9851204478898536561683010233220--13568448988505760799999998599793889999887247999
Q ss_pred CCCCCEEECCHHHHHHHHHHH
Q ss_conf 554748867999998753210
Q gi|254780406|r 228 LLAGSTREVSKKILREQLGPH 248 (354)
Q Consensus 228 L~~G~~r~l~~~e~~~l~~~~ 248 (354)
|+.|+||+|++.|+..+....
T Consensus 159 l~~g~~r~l~~~~l~~~~l~~ 179 (186)
T 1vio_A 159 LEEGEYRPLTQSEIEKLVEGG 179 (186)
T ss_dssp CCTTCEEECCHHHHHHTC---
T ss_pred CCCCCEEECCHHHHHHHHHCC
T ss_conf 999762599999999999579