HHsearch alignment of GI: 254780406 and MMDB domain: 2aus_C_31-245
>2aus_C (C:31-245) Pseudouridine synthase; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3hjw_A* 3hjy_A
Probab=98.24 E-value=9.8e-06 Score=55.53 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=97.8
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ 152 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~ 152 (354)
.-++++|||.|+.++..-...+.. ....++...|-||-..+|+|++.-. -+.+|..--....|+|.+++..-
T Consensus 16 ~G~l~~~KP~g~tS~~vv~~ik~~------~~~~kvGh~GTLDp~atGvl~i~vg--~aTkl~~~~~~~~K~Y~~~~~~g 87 (215)
T 2aus_C 16 YGVINLDKPPGPTSHEVVAWIKRI------LNLEKAGHGGTLDPKVSGVLPVALE--RATRVVQALLPAGKEYVALMHLH 87 (215)
T ss_dssp TEEEEEEECSSSCHHHHHHHHHHH------TTCSCEEESSCCCTTCEEEEEEEEG--GGGGGGGGGTTCCEEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCCCCEEEEEC--HHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 838999579989999999999987------1834257898789865034767873--89989999745885999998872
Q ss_pred CCHHHHHHHHHHHHCCCE----------------EEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC------
Q ss_conf 564678887400000876----------------7503430364026880799999951842899999998398------
Q gi|254780406|r 153 VDQDKLNLLKKGIVIQGI----------------CYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNW------ 210 (354)
Q Consensus 153 ~~~~~~~~~~~g~~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~------ 210 (354)
...+..+.-..-..+.+. ...-.......-+.....++|....|-| ||-++..+|.
T Consensus 88 ~~t~t~d~~~~~~~~~g~~~Q~pP~~SA~k~~g~r~y~~ar~g~~~~~p~~~~~v~cs~GTY--IRsL~~Dig~~Lg~~a 165 (215)
T 2aus_C 88 GDVPEDKIRAVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEILEIDGRDVLFRVGVEAGTY--IRSLIHHIGLALGVGA 165 (215)
T ss_dssp SCCCHHHHHHHHHHTSEEEECC------------EEEEEEEEEEEEETTEEEEEEEECTTCC--HHHHHHHHHHHHSSCE
T ss_pred CCCCCCHHHEEECCCEEEEEECCCHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCCCE--EEHHHHHHHHHHCCCC
T ss_conf 34444400133023214488888845631014654067899986226733899999549937--5038999766650152
Q ss_pred EEEEEEEEEECCEECCC-CCCCCEEECCHHHHHHHHH
Q ss_conf 68688975870545187-5547488679999987532
Q gi|254780406|r 211 KVNRLIRISYGPFQLGT-LLAGSTREVSKKILREQLG 246 (354)
Q Consensus 211 ~V~~L~Rv~~G~~~l~~-L~~G~~r~l~~~e~~~l~~ 246 (354)
.+..|.|+++|+|.+++ | ++-+||.++..
T Consensus 166 ~l~~L~Rt~~G~F~l~~al-------~~l~~l~~~~~ 195 (215)
T 2aus_C 166 HMAELRRTRSGPFKEDETL-------VTLHDLVDYYH 195 (215)
T ss_dssp EEEEEEEEEETTEESSTTE-------ECHHHHHHHHH
T ss_pred EEEEEEEEEECCCCHHHHH-------HHHHHHHHHHH
T ss_conf 1414796445686889975-------44999998999