HHsearch alignment of GI: 254780406 and MMDB domain: 2aus_C_31-245

>2aus_C (C:31-245) Pseudouridine synthase; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3hjw_A* 3hjy_A
Probab=98.24  E-value=9.8e-06  Score=55.53  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
                      .-++++|||.|+.++..-...+..      ....++...|-||-..+|+|++.-.  -+.+|..--....|+|.+++..-
T Consensus        16 ~G~l~~~KP~g~tS~~vv~~ik~~------~~~~kvGh~GTLDp~atGvl~i~vg--~aTkl~~~~~~~~K~Y~~~~~~g   87 (215)
T 2aus_C           16 YGVINLDKPPGPTSHEVVAWIKRI------LNLEKAGHGGTLDPKVSGVLPVALE--RATRVVQALLPAGKEYVALMHLH   87 (215)
T ss_dssp             TEEEEEEECSSSCHHHHHHHHHHH------TTCSCEEESSCCCTTCEEEEEEEEG--GGGGGGGGGTTCCEEEEEEEEES
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCCCCEEEEEC--HHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             838999579989999999999987------1834257898789865034767873--89989999745885999998872


Q ss_pred             CCHHHHHHHHHHHHCCCE----------------EEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC------
Q ss_conf             564678887400000876----------------7503430364026880799999951842899999998398------
Q gi|254780406|r  153 VDQDKLNLLKKGIVIQGI----------------CYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNW------  210 (354)
Q Consensus       153 ~~~~~~~~~~~g~~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~------  210 (354)
                      ...+..+.-..-..+.+.                ...-.......-+.....++|....|-|  ||-++..+|.      
T Consensus        88 ~~t~t~d~~~~~~~~~g~~~Q~pP~~SA~k~~g~r~y~~ar~g~~~~~p~~~~~v~cs~GTY--IRsL~~Dig~~Lg~~a  165 (215)
T 2aus_C           88 GDVPEDKIRAVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEILEIDGRDVLFRVGVEAGTY--IRSLIHHIGLALGVGA  165 (215)
T ss_dssp             SCCCHHHHHHHHHHTSEEEECC------------EEEEEEEEEEEEETTEEEEEEEECTTCC--HHHHHHHHHHHHSSCE
T ss_pred             CCCCCCHHHEEECCCEEEEEECCCHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCCCE--EEHHHHHHHHHHCCCC
T ss_conf             34444400133023214488888845631014654067899986226733899999549937--5038999766650152


Q ss_pred             EEEEEEEEEECCEECCC-CCCCCEEECCHHHHHHHHH
Q ss_conf             68688975870545187-5547488679999987532
Q gi|254780406|r  211 KVNRLIRISYGPFQLGT-LLAGSTREVSKKILREQLG  246 (354)
Q Consensus       211 ~V~~L~Rv~~G~~~l~~-L~~G~~r~l~~~e~~~l~~  246 (354)
                      .+..|.|+++|+|.+++ |       ++-+||.++..
T Consensus       166 ~l~~L~Rt~~G~F~l~~al-------~~l~~l~~~~~  195 (215)
T 2aus_C          166 HMAELRRTRSGPFKEDETL-------VTLHDLVDYYH  195 (215)
T ss_dssp             EEEEEEEEEETTEESSTTE-------ECHHHHHHHHH
T ss_pred             EEEEEEEEEECCCCHHHHH-------HHHHHHHHHHH
T ss_conf             1414796445686889975-------44999998999