HHsearch alignment of GI: 254780406 and MMDB domain: 2cqj_A_

>2cqj_A (A:) BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=7e-08  Score=69.07  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECC--CCEEEECCEE
Q ss_conf             7734478899988687-789999999869869999992406878079--9979999989
Q gi|254780406|r   11 FTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMS--TDHIEVDGVP   66 (354)
Q Consensus        11 ~~~~RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~--~d~v~vdg~~   66 (354)
                      .-..|||.+|.++|++ ||.+|.+||..|.|+|||++|+.|++.|.+  +|.|++.++.
T Consensus         5 ~lerRLd~~l~~~g~a~s~~~Ar~lI~~G~V~Vng~~v~~Ps~~v~~~~~d~I~~~~~~   63 (71)
T 2cqj_A            5 SSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSS   63 (71)
T ss_dssp             CCEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCS
T ss_pred             HHHCCHHHHHHHHCCCCCHHHHHHHHHHCEEEECCEEECCCCEEECCCCCCEEEEECCC
T ss_conf             44412689999805527899999999849899899995569858358998869984688