HHsearch alignment of GI: 254780406 and MMDB domain: 2i82_A_
>2i82_A (A:) Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=99.88 E-value=6.8e-25 Score=176.20 Aligned_cols=169 Identities=13% Similarity=0.068 Sum_probs=128.5
Q ss_pred CCEEEECCEECC-CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECC-CCCCEECCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 997999998922-55643896027875156314433336442101102-3432002665543323202223676410001
Q gi|254780406|r 57 TDHIEVDGVPLR-KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPS-IFSRVISVGRLDINTEGLLLLTNDGGLARVL 134 (354)
Q Consensus 57 ~d~v~vdg~~i~-~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~vgRLD~~t~GLlllTndg~l~~~l 134 (354)
+|.+.+++..+. .+++..|+++|||.|+.|+..+.....++...+.. ...++++|||||++||||||||+|+++++.|
T Consensus 2 ~~~~~~~~~~~~Ii~ed~~~ivinKP~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~vhRLD~~TSGllllak~~~~~~~l 81 (217)
T 2i82_A 2 ENYNPPQEPWLVILYQDDHIXVVNKPSGLLSVPGRLEEHKDSVXTRIQRDYPQAESVHRLDXATSGVIVVALTKAAEREL 81 (217)
T ss_dssp CCCCCCCSSSCCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCTTCEESSCCCTTCEEEEEEESSHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECHHHHHHH
T ss_conf 88894989995299979989999999998257998877603899976441033222345554210158986031777788
Q ss_pred CCC--CCCCEEEEEEEECCCCCHHHHHHHHHHH------------HCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHH
Q ss_conf 234--4574047752112455646788874000------------00876750343036402688079999995184289
Q gi|254780406|r 135 ELP--STQWLRVYRVRFHGQVDQDKLNLLKKGI------------VIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNRE 200 (354)
Q Consensus 135 ~~p--~~~~~k~Y~v~v~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~q 200 (354)
.++ ...+.|.|.+.+.+.+............ ...+.......+.........+++++.+.+||+||
T Consensus 82 ~~~~~~~~~~k~Y~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~TGr~HQ 161 (217)
T 2i82_A 82 KRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQ 161 (217)
T ss_dssp HHHHHTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEECTTTCBCCEEEEEEEEEETTTEEEEEEEESSCCTTH
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCHHH
T ss_conf 98765140103689886154466640674101232243322000122476300101011112331047889850262378
Q ss_pred HHHHHHHCCCEEEEEEEEEECCEEC
Q ss_conf 9999998398686889758705451
Q gi|254780406|r 201 IKKVFEFFNWKVNRLIRISYGPFQL 225 (354)
Q Consensus 201 Irr~~~~~g~~V~~L~Rv~~G~~~l 225 (354)
||+||+++|++|.+..+...+.+.+
T Consensus 162 IR~h~a~lg~PIlgD~~Yg~~~~~~ 186 (217)
T 2i82_A 162 LRVHXLALGHPILGDRFYASPEARA 186 (217)
T ss_dssp HHHHHHHTTCCBTTCTTTSCHHHHH
T ss_pred HHHHHHHHCCEEECCCCCCCHHHCC
T ss_conf 9999997197681676768855636