HHsearch alignment of GI: 254780406 and MMDB domain: 2k6p_A_
>2k6p_A (A:) Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=99.06 E-value=1.1e-11 Score=93.12 Aligned_cols=76 Identities=22% Similarity=0.238 Sum_probs=65.0
Q ss_pred HHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECC----EE---------C-CCCCCEEEEEC
Q ss_conf 44788999886-8778999999986986999999240687807999799999----89---------2-25564389602
Q gi|254780406|r 14 QRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG----VP---------L-RKAERTRLWLY 78 (354)
Q Consensus 14 ~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg----~~---------i-~~~~~~~~~~~ 78 (354)
+||++||+..+ .+||+.+.++|+.|.|+|||+++. +++.|..+|.|++.. .+ + ..+++..|+++
T Consensus 1 mRLD~~L~~~~~~~sr~~~~k~i~~g~I~VNg~~~~-~~~~v~~gD~i~i~~~~~~~~~~~~~~~~~~~i~yed~~~lvi 79 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK-ASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIA 79 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEECC-TTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEE
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEEE-ECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHCCCEE
T ss_conf 967899987277159999999998997998989986-6247189999999848963689999788658986455061598
Q ss_pred CCCCEEEECCCC
Q ss_conf 787515631443
Q gi|254780406|r 79 HKPIGLVTTHSD 90 (354)
Q Consensus 79 ~KP~g~~~~~~~ 90 (354)
|||+|++++...
T Consensus 80 nKpagl~~hp~~ 91 (92)
T 2k6p_A 80 PKTKELEHHHHH 91 (92)
T ss_dssp ECCCC-------
T ss_pred ECHHCCCCCCCC
T ss_conf 063216244457