HHsearch alignment of GI: 254780406 and MMDB domain: 2k6p_A_

>2k6p_A (A:) Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=99.06  E-value=1.1e-11  Score=93.12  Aligned_cols=76  Identities=22%  Similarity=0.238  Sum_probs=65.0

Q ss_pred             HHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECC----EE---------C-CCCCCEEEEEC
Q ss_conf             44788999886-8778999999986986999999240687807999799999----89---------2-25564389602
Q gi|254780406|r   14 QRVSKVIARAG-IASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG----VP---------L-RKAERTRLWLY   78 (354)
Q Consensus        14 ~RL~K~la~~g-~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg----~~---------i-~~~~~~~~~~~   78 (354)
                      +||++||+..+ .+||+.+.++|+.|.|+|||+++. +++.|..+|.|++..    .+         + ..+++..|+++
T Consensus         1 mRLD~~L~~~~~~~sr~~~~k~i~~g~I~VNg~~~~-~~~~v~~gD~i~i~~~~~~~~~~~~~~~~~~~i~yed~~~lvi   79 (92)
T 2k6p_A            1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK-ASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIA   79 (92)
T ss_dssp             CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEECC-TTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEE
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEEE-ECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHCCCEE
T ss_conf             967899987277159999999998997998989986-6247189999999848963689999788658986455061598


Q ss_pred             CCCCEEEECCCC
Q ss_conf             787515631443
Q gi|254780406|r   79 HKPIGLVTTHSD   90 (354)
Q Consensus        79 ~KP~g~~~~~~~   90 (354)
                      |||+|++++...
T Consensus        80 nKpagl~~hp~~   91 (92)
T 2k6p_A           80 PKTKELEHHHHH   91 (92)
T ss_dssp             ECCCC-------
T ss_pred             ECHHCCCCCCCC
T ss_conf             063216244457