HHsearch alignment of GI: 254780406 and MMDB domain: 2oml_A_
>2oml_A (A:) Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.97 E-value=5e-31 Score=214.82 Aligned_cols=168 Identities=30% Similarity=0.527 Sum_probs=149.3
Q ss_pred CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 55643896027875156314433336442101102343200266554332320222367641000123445740477521
Q gi|254780406|r 69 KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVR 148 (354)
Q Consensus 69 ~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~ 148 (354)
.+++..|+++|||.|+.|+..+.....++...+.. .++++|||||++|+||||||+|+++++.|+.+...+.|+|.+.
T Consensus 7 l~ed~~~ivinKP~g~~~~~~~~~~~~~~~~~l~~--~~l~~vhRLD~~tsGlll~a~~~~~~~~l~~~~~~i~k~Y~a~ 84 (189)
T 2oml_A 7 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQ 84 (189)
T ss_dssp -CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCCC--SSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEEEEEE
T ss_pred CCCCCEEEEEECCCCEEEECCCCCCCCCHHHHCCC--CCCEECCCCCCCCCCEEEEECCCHHHHHCCCCCEEEEEEEEEE
T ss_conf 88998899998999838607799888658896371--2534731026120007999325302221031230377899999
Q ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEC---------------CCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEE
Q ss_conf 12455646788874000008767503---------------430364026880799999951842899999998398686
Q gi|254780406|r 149 FHGQVDQDKLNLLKKGIVIQGICYGD---------------MQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVN 213 (354)
Q Consensus 149 v~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~ 213 (354)
|.+.+..+....+..+....+..... ..+.........+++.+++.+||+||||+||+++|++|.
T Consensus 85 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tGr~hQIR~hl~~lg~pIv 164 (189)
T 2oml_A 85 VEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 164 (189)
T ss_dssp EESCCCHHHHHHHHHCCEETTEECCCCEEEEECCCTTCCCCSSCCC-CTTSCEEEEEEEESCCCTTHHHHHHHHTTCCEE
T ss_pred EECCCCHHHHHHHHCCCEECCCEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHCCCEEE
T ss_conf 93279989999986494507851576579995356641024557888740565079999945977999999998699698
Q ss_pred EEEEEEECCEECCCCCCCCEEECCH
Q ss_conf 8897587054518755474886799
Q gi|254780406|r 214 RLIRISYGPFQLGTLLAGSTREVSK 238 (354)
Q Consensus 214 ~L~Rv~~G~~~l~~L~~G~~r~l~~ 238 (354)
.+.++++|++.+++|++|+||+||.
T Consensus 165 gD~~Y~~~~~~~~~l~l~~~R~lt~ 189 (189)
T 2oml_A 165 RLIRYAMGDYSLDNLANGEWREVTD 189 (189)
T ss_dssp EEEEEEETTEECTTCCTTCEEECCC
T ss_pred EEEEEEECCEECCCCCCCCCEECCC
T ss_conf 9899999998507889988377979