HHsearch alignment of GI: 254780406 and MMDB domain: 2oml_A_

>2oml_A (A:) Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.97  E-value=5e-31  Score=214.82  Aligned_cols=168  Identities=30%  Similarity=0.527  Sum_probs=149.3

Q ss_pred             CCCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             55643896027875156314433336442101102343200266554332320222367641000123445740477521
Q gi|254780406|r   69 KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVR  148 (354)
Q Consensus        69 ~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~  148 (354)
                      .+++..|+++|||.|+.|+..+.....++...+..  .++++|||||++|+||||||+|+++++.|+.+...+.|+|.+.
T Consensus         7 l~ed~~~ivinKP~g~~~~~~~~~~~~~~~~~l~~--~~l~~vhRLD~~tsGlll~a~~~~~~~~l~~~~~~i~k~Y~a~   84 (189)
T 2oml_A            7 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQ   84 (189)
T ss_dssp             -CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCCC--SSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEEEEEE
T ss_pred             CCCCCEEEEEECCCCEEEECCCCCCCCCHHHHCCC--CCCEECCCCCCCCCCEEEEECCCHHHHHCCCCCEEEEEEEEEE
T ss_conf             88998899998999838607799888658896371--2534731026120007999325302221031230377899999


Q ss_pred             ECCCCCHHHHHHHHHHHHCCCEEEEC---------------CCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEE
Q ss_conf             12455646788874000008767503---------------430364026880799999951842899999998398686
Q gi|254780406|r  149 FHGQVDQDKLNLLKKGIVIQGICYGD---------------MQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVN  213 (354)
Q Consensus       149 v~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~  213 (354)
                      |.+.+..+....+..+....+.....               ..+.........+++.+++.+||+||||+||+++|++|.
T Consensus        85 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tGr~hQIR~hl~~lg~pIv  164 (189)
T 2oml_A           85 VEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL  164 (189)
T ss_dssp             EESCCCHHHHHHHHHCCEETTEECCCCEEEEECCCTTCCCCSSCCC-CTTSCEEEEEEEESCCCTTHHHHHHHHTTCCEE
T ss_pred             EECCCCHHHHHHHHCCCEECCCEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHCCCEEE
T ss_conf             93279989999986494507851576579995356641024557888740565079999945977999999998699698


Q ss_pred             EEEEEEECCEECCCCCCCCEEECCH
Q ss_conf             8897587054518755474886799
Q gi|254780406|r  214 RLIRISYGPFQLGTLLAGSTREVSK  238 (354)
Q Consensus       214 ~L~Rv~~G~~~l~~L~~G~~r~l~~  238 (354)
                      .+.++++|++.+++|++|+||+||.
T Consensus       165 gD~~Y~~~~~~~~~l~l~~~R~lt~  189 (189)
T 2oml_A          165 RLIRYAMGDYSLDNLANGEWREVTD  189 (189)
T ss_dssp             EEEEEEETTEECTTCCTTCEEECCC
T ss_pred             EEEEEEECCEECCCCCCCCCEECCC
T ss_conf             9899999998507889988377979