HHsearch results for GI: 254780406 and protein with PDBid: 1sgv_A
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: b.122.1.1 d.265.1.2
Probab=97.82 E-value=0.00024 Score=45.83 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=80.8
Q ss_pred CEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 43896027875156314433336442101102343200266554332320222367641000123445740477521124
Q gi|254780406|r 72 RTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHG 151 (354)
Q Consensus 72 ~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~ 151 (354)
..-++++|||.|+.++..=..-+.. -...++...|.||-..+|||++--. -+.+++.--....|+|.+++.-
T Consensus 5 ~~G~l~i~KP~G~TS~~~v~~vk~~------~~~~KvGH~GTLDP~AsGvL~i~vG--~aTKl~~~~~~~~K~Y~~~~~l 76 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHDVVGRCRRI------FATRRVGHAGTLDPMATGVLVIGIE--RATKILGLLTAAPKSYAATIRL 76 (316)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHH------TTCSCEEESSCCCTTCEEEEEEEEG--GGGGGGGGTTTSCEEEEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCEEEEEEEEC--HHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9889999779999989999999998------5878456487789756334999978--7884779985186489999997
Q ss_pred C--------------------CCHHHHHHHHHHH--------------HCCCEEE--------------ECCCE---EEE
Q ss_conf 5--------------------5646788874000--------------0087675--------------03430---364
Q gi|254780406|r 152 Q--------------------VDQDKLNLLKKGI--------------VIQGICY--------------GDMQV---TLD 180 (354)
Q Consensus 152 ~--------------------~~~~~~~~~~~g~--------------~~~~~~~--------------~~~~~---~~~ 180 (354)
- ++.+.++.....+ .+++... ++..+ .+.
T Consensus 77 G~~TdT~D~~G~v~~~~~~~~~~~e~i~~~L~~f~G~i~Q~PP~ySAiKv~GkraYelAR~G~~v~~~~r~v~I~~i~l~ 156 (316)
T 1sgv_A 77 GQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELL 156 (316)
T ss_dssp TEEETTSBTTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEEEEEEEE
T ss_conf 76457778777477664157799999999998658715542866663012784087898758865456444279899999
Q ss_pred EC--CCC--EEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf 02--688--079999995184289999999839------868688975870545187
Q gi|254780406|r 181 TQ--KGS--NAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT 227 (354)
Q Consensus 181 ~~--~~~--~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~ 227 (354)
.- ... ...++|+-..|-| ||-+...+| -.+..|.|+++|+|.+++
T Consensus 157 ~~~~~~~~p~~~~~v~Cs~GTY--IRsLa~DiG~~Lgt~A~~~~LrRt~~G~F~~~~ 211 (316)
T 1sgv_A 157 AARRRDQLIDIDVEIDCSSGTY--IRALARDLGDALGVGGHVTALRRTRVGRFELDQ 211 (316)
T ss_dssp EEEEETTEEEEEEEEEESCCTT--HHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGG
T ss_pred EECCCCCCCEEEEEEEECCCCH--HHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHH
T ss_conf 7316677705899999789507--999999999986998798689977785788898