HHsearch results for GI: 254780406 and protein with PDBid: 1v9k_A
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=99.74 E-value=5.8e-19 Score=137.87 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=105.4
Q ss_pred CCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEEC---CCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCE
Q ss_conf 25564389602787515631443333644210110---2343200266554332320222367641000123--445740
Q gi|254780406|r 68 RKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLP---SIFSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWL 142 (354)
Q Consensus 68 ~~~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~ 142 (354)
..+|+..++++|||.|+.|+........++ ..+. .....+.+|+|||++|||||||+.+...+..|.. ....+.
T Consensus 4 IlyED~~ilvvnKP~gl~vh~~~~~~~~~~-~~l~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~f~~r~v~ 82 (228)
T 1v9k_A 4 IMYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 82 (228)
T ss_dssp EEEECSSEEEEEECTTSCSSCCSSSBCCHH-HHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSE
T ss_pred EEEECCCEEEEECCCCCCCCCCCCCCCHHH-HHHHHHCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHCCEE
T ss_conf 999789999999899986489989962699-9999867788756667307987623389865688899999999738333
Q ss_pred EEEEEEECCCCCHHHHHHHH--------HH----HHCCCEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC
Q ss_conf 47752112455646788874--------00----0008767503430364026880799999951842899999998398
Q gi|254780406|r 143 RVYRVRFHGQVDQDKLNLLK--------KG----IVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNW 210 (354)
Q Consensus 143 k~Y~v~v~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~ 210 (354)
|+|++.|.|.+......... .+ ....++......+.+.......+++++.+.+||+||||.+|+++|+
T Consensus 83 K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~a~T~~~~~~~~~~~slv~~~~~TGRtHQIRvHla~lG~ 162 (228)
T 1v9k_A 83 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGH 162 (228)
T ss_dssp EEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEECTTSBCCCEEEEEEEECSSEEEEEEEESSCCTTHHHHHHHHTTC
T ss_pred EEEECCCCCCCCCCCCEEECCEECCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 68700227863223560420201133334037888579982232676542034886799999586838999999874797
Q ss_pred EEEE
Q ss_conf 6868
Q gi|254780406|r 211 KVNR 214 (354)
Q Consensus 211 ~V~~ 214 (354)
+++.
T Consensus 163 PIvG 166 (228)
T 1v9k_A 163 PIAF 166 (228)
T ss_dssp CBTT
T ss_pred EEEC
T ss_conf 4836