HHsearch results for GI: 254780406 and protein with PDBid: 2apo_A
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=98.04 E-value=3.2e-05 Score=51.31 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=89.8
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEC--
Q ss_conf 389602787515631443333644210110234320026655433232022236764100012344574047752112--
Q gi|254780406|r 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFH-- 150 (354)
Q Consensus 73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~-- 150 (354)
.-++++|||.|..++..-..-+. .+ ...+....|-||-..+|+|++.-.. +.++..--..-.|+|.+.+.
T Consensus 66 ~G~l~idKP~G~TS~~vv~~vkk----~l--~~kK~GH~GTLDP~AtGvL~i~ig~--aTKl~~~~~~~~K~Y~~~~~lg 137 (357)
T 2apo_A 66 YGVVVVDKPRGPTSHEVSTWVKK----IL--NLDKAGHGGTLDPKVTGVLPVALER--ATKTIPMWHIPPKEYVCLMHLH 137 (357)
T ss_dssp TEEEEEEECSSSCHHHHHHHHHH----HT--TCSCEEESSCCCTTCEEEEEEEEGG--GGGGGGGTTSSCEEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH----HH--CCCCCCCCCCCCCCCCEEEEEEECH--HHCCCHHHCCCCEEEEEEEEEE
T ss_conf 96899978999998999999999----84--8882577867897672069999885--6430645437980999999972
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECC--------------CEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC------C
Q ss_conf 4556467888740000087675034--------------3036402688079999995184289999999839------8
Q gi|254780406|r 151 GQVDQDKLNLLKKGIVIQGICYGDM--------------QVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFN------W 210 (354)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g------~ 210 (354)
...+.+.+.+....+.-.-.+..|. .+.+..-+.....|+|.-.-|-| ||.++..+| -
T Consensus 138 ~~t~~~di~~~l~~F~G~i~Q~PP~~SAvKr~~R~~~Iy~l~ll~~~~~~~~f~V~Cs~GTY--IRsLa~DlG~~Lg~~a 215 (357)
T 2apo_A 138 RDASEEDILRVFKEFTGRIYQRPPLKAAVKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTY--IRKLCEDIGEALGTSA 215 (357)
T ss_dssp SCCCHHHHHHHHHHHSEEEECC-----------CEEEEEEEEEEEEETTEEEEEEEECTTCC--HHHHHHHHHHHTTSCE
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCEE--HHHHHHHHHHHHCCCE
T ss_conf 22441779999986786162069915640024453079999874157886899999568636--8999999999839968
Q ss_pred EEEEEEEEEECCEECCC
Q ss_conf 68688975870545187
Q gi|254780406|r 211 KVNRLIRISYGPFQLGT 227 (354)
Q Consensus 211 ~V~~L~Rv~~G~~~l~~ 227 (354)
.+..|.|+++|+|.+++
T Consensus 216 ~m~~LrRt~~G~F~~~~ 232 (357)
T 2apo_A 216 HMQELRRTKSGCFEEKD 232 (357)
T ss_dssp EEEEEEEEEETTEEGGG
T ss_pred EEEECCCCCCCCCCHHH
T ss_conf 98315874028868798