HHsearch results for GI: 254780406 and protein with PDBid: 2oml_A
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=4.7e-42 Score=283.29 Aligned_cols=167 Identities=31% Similarity=0.535 Sum_probs=151.6
Q ss_pred CCCEEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 56438960278751563144333364421011023432002665543323202223676410001234457404775211
Q gi|254780406|r 70 AERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRF 149 (354)
Q Consensus 70 ~~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v 149 (354)
.++..||++|||+|++|+..|+.++.++++++.. .++++|||||++||||||||+|++++++|+++...++|+|++.|
T Consensus 8 ~~~~~~iivnKP~G~~~~~~~~~~~~~l~~~l~~--~~~~~vhRLDr~TSGLll~a~~~~~~~~l~~~~~~i~K~Y~a~v 85 (189)
T 2oml_A 8 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQV 85 (189)
T ss_dssp CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCCC--SSCEESSCCCTTCEEEEEEESCHHHHHHHHSTTSCCCEEEEEEE
T ss_pred CCCCEEEEEECCCCCEECCCCCCCCCCHHHHCCC--CCCEECCCCCCCCCCCEEEECCCHHHHHHCCCCCCEEEEEEEEE
T ss_conf 8998899999999838317799999768896672--47537634587778808983373035554257653678999999
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCEEEE---------------ECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEE
Q ss_conf 2455646788874000008767503430364---------------0268807999999518428999999983986868
Q gi|254780406|r 150 HGQVDQDKLNLLKKGIVIQGICYGDMQVTLD---------------TQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNR 214 (354)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~ 214 (354)
.|.++++....+.+|+...+....+...... ......+|++|+|.|||+||||+||+++||+|++
T Consensus 86 ~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~v~l~tGR~HQIR~hl~~iG~pI~~ 165 (189)
T 2oml_A 86 EGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLR 165 (189)
T ss_dssp ESCCCHHHHHHHHHCCEETTEECCCCEEEEECCCTTCCCCSSCCC-CTTSCEEEEEEEESCCCTTHHHHHHHHTTCCEEE
T ss_pred ECCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHCCCEEEE
T ss_conf 53799899999864983468622320689953566522046689986236514899995158749999999986997978
Q ss_pred EEEEEECCEECCCCCCCCEEECCH
Q ss_conf 897587054518755474886799
Q gi|254780406|r 215 LIRISYGPFQLGTLLAGSTREVSK 238 (354)
Q Consensus 215 L~Rv~~G~~~l~~L~~G~~r~l~~ 238 (354)
|+|++||+|+|++|++|+||+||.
T Consensus 166 l~R~~~G~~~l~~L~~G~~R~Lte 189 (189)
T 2oml_A 166 LIRYAMGDYSLDNLANGEWREVTD 189 (189)
T ss_dssp EEEEEETTEECTTCCTTCEEECCC
T ss_pred EEEEEECCEECCCCCCCCEEECCC
T ss_conf 899999998617889988287979