HHsearch results for GI: 254780406 and protein with PDBid: 3dh3_A
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=0 Score=459.78 Aligned_cols=231 Identities=27% Similarity=0.402 Sum_probs=210.9
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCCC--CEEEEECCCCCEEEECC
Q ss_conf 7734478899988687789999999869869999992406878079997999998922556--43896027875156314
Q gi|254780406|r 11 FTPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAE--RTRLWLYHKPIGLVTTH 88 (354)
Q Consensus 11 ~~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~~--~~~~~~~~KP~g~~~~~ 88 (354)
++++|||||||++|+||||+|++||++|+|+|||++|+ ++++|.++|.|.|||+++.+.+ ...||++|||.+++|+.
T Consensus 4 ~~~iRL~K~La~~g~~SRr~ae~lI~~GrV~VNGkvv~-~~~kV~~~D~I~vdg~~~~~~~~~~~~~i~~~kp~~~~~~~ 82 (290)
T 3dh3_A 4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTT 82 (290)
T ss_dssp CCCEEHHHHHHTTTSSCHHHHHHHHHTTCEEETTEECC-TTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTCBCCC
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEECCEECC-CCCCCCCCCEEEECCEECCCCCCCCEEEEEECCCCCEECCC
T ss_conf 88725999998778842999999997796998999957-98897999989999998444356525999707987423354
Q ss_pred CCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43333644210110234320026655433232022236764100012344574047752112455646788874000008
Q gi|254780406|r 89 SDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQ 168 (354)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~ 168 (354)
.+.. ..+++++ .....+|++|||||+||||||||||||+|+++|+||+++|+++|+|+|.++++++.+..|..|+.++
T Consensus 83 ~~~~-~~~~~~l-~~~~~rl~~VGRLD~dTsGLLLlTnDg~l~~~L~~p~~~i~k~Y~v~v~g~i~~~~l~~l~~Gv~~~ 160 (290)
T 3dh3_A 83 EDGE-RDNIVDF-VNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL 160 (290)
T ss_dssp CSSC-TTBHHHH-HTCSSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEESSCCCHHHHHHHHTCCBCS
T ss_pred CCCC-CCCHHHH-CCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEE
T ss_conf 5677-7754441-1355523561346888875499955958999986022267626899993679999999997387531
Q ss_pred CEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 76750343036402688079999995184289999999839868688975870545187554748867999998753210
Q gi|254780406|r 169 GICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQLGPH 248 (354)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~l~~~~ 248 (354)
++.+.++.+.. ..++|++|+|.||+|||||+||+++||+|++|+||+||+|+|++|++|+||+|+++||.+|+...
T Consensus 161 ~~~~~~~~~~~----~~~~~l~i~l~eGr~rqIRr~~~~iG~~V~~L~R~~~G~~~l~~L~~G~~r~l~~~ei~~l~~~~ 236 (290)
T 3dh3_A 161 GTVTKKCKVKK----EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI 236 (290)
T ss_dssp SSBCCCCEEEE----CSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECTTCCTTCEEECCHHHHHHHHHTC
T ss_pred EEEEEEEEEEE----CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHHH
T ss_conf 15732124552----36715899925886799999999869979798999989987389899774899999999999876