HHsearch results for GI: 254780406 and protein with PDBid: 3dh3_A

>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00  E-value=0  Score=459.78  Aligned_cols=231  Identities=27%  Similarity=0.402  Sum_probs=210.9

Q ss_pred             CCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCCC--CEEEEECCCCCEEEECC
Q ss_conf             7734478899988687789999999869869999992406878079997999998922556--43896027875156314
Q gi|254780406|r   11 FTPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAE--RTRLWLYHKPIGLVTTH   88 (354)
Q Consensus        11 ~~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~~--~~~~~~~~KP~g~~~~~   88 (354)
                      ++++|||||||++|+||||+|++||++|+|+|||++|+ ++++|.++|.|.|||+++.+.+  ...||++|||.+++|+.
T Consensus         4 ~~~iRL~K~La~~g~~SRr~ae~lI~~GrV~VNGkvv~-~~~kV~~~D~I~vdg~~~~~~~~~~~~~i~~~kp~~~~~~~   82 (290)
T 3dh3_A            4 DSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIVSTT   82 (290)
T ss_dssp             CCCEEHHHHHHTTTSSCHHHHHHHHHTTCEEETTEECC-TTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTCBCCC
T ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEECCEECC-CCCCCCCCCEEEECCEECCCCCCCCEEEEEECCCCCEECCC
T ss_conf             88725999998778842999999997796998999957-98897999989999998444356525999707987423354


Q ss_pred             CCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             43333644210110234320026655433232022236764100012344574047752112455646788874000008
Q gi|254780406|r   89 SDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQ  168 (354)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~~~~~~~~~~~~g~~~~  168 (354)
                      .+.. ..+++++ .....+|++|||||+||||||||||||+|+++|+||+++|+++|+|+|.++++++.+..|..|+.++
T Consensus        83 ~~~~-~~~~~~l-~~~~~rl~~VGRLD~dTsGLLLlTnDg~l~~~L~~p~~~i~k~Y~v~v~g~i~~~~l~~l~~Gv~~~  160 (290)
T 3dh3_A           83 EDGE-RDNIVDF-VNHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPIL  160 (290)
T ss_dssp             CSSC-TTBHHHH-HTCSSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEESSCCCHHHHHHHHTCCBCS
T ss_pred             CCCC-CCCHHHH-CCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEE
T ss_conf             5677-7754441-1355523561346888875499955958999986022267626899993679999999997387531


Q ss_pred             CEEEECCCEEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf             76750343036402688079999995184289999999839868688975870545187554748867999998753210
Q gi|254780406|r  169 GICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQLGPH  248 (354)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~v~l~eGr~~qIrr~~~~~g~~V~~L~Rv~~G~~~l~~L~~G~~r~l~~~e~~~l~~~~  248 (354)
                      ++.+.++.+..    ..++|++|+|.||+|||||+||+++||+|++|+||+||+|+|++|++|+||+|+++||.+|+...
T Consensus       161 ~~~~~~~~~~~----~~~~~l~i~l~eGr~rqIRr~~~~iG~~V~~L~R~~~G~~~l~~L~~G~~r~l~~~ei~~l~~~~  236 (290)
T 3dh3_A          161 GTVTKKCKVKK----EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLI  236 (290)
T ss_dssp             SSBCCCCEEEE----CSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETTEECTTCCTTCEEECCHHHHHHHHHTC
T ss_pred             EEEEEEEEEEE----CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHHH
T ss_conf             15732124552----36715899925886799999999869979798999989987389899774899999999999876