HHSEARCH alignment of GI: 254780406 and SCOP domain: d1c06a_

Alignment
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.11  E-value=2.2e-06  Score=57.12  Aligned_cols=52  Identities=19%  Similarity=0.395  Sum_probs=48.4

Q ss_pred             HHHHHHHHHCCC-CCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCE
Q ss_conf             447889998868-7789999999869869999992406878079997999998
Q gi|254780406|r   14 QRVSKVIARAGI-ASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGV   65 (354)
Q Consensus        14 ~RL~K~la~~g~-~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~   65 (354)
                      .|||-++-++|+ .||.+|.++|..|.|.|||+.|+-|++.|.++|.|+|..+
T Consensus        51 ~RlD~vv~r~gfa~t~~~arQ~v~Hghi~vNgk~v~iPSy~vk~GDvIsvkek  103 (159)
T d1c06a_          51 SRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREK  103 (159)
T ss_dssp             HCHHHHHHHHTSSSSHHHHHHHHHTSCEEETTEECCCSSCCCCSSCEEEECGG
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEECCC
T ss_conf             87545510576327888899888735637133599851215227848861200


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Bacillus stearothermophilus [TaxId: 1422]