HHSEARCH alignment of GI: 254780406 and SCOP domain: d1k8wa5

Alignment

Probab=98.07  E-value=6e-06  Score=54.40  Aligned_cols=145  Identities=16%  Similarity=0.162  Sum_probs=85.6

Q ss_pred             EEEEECCCCCEEEECCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             38960278751563144333364421011023432002665543323202223676410001234457404775211245
Q gi|254780406|r   73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQ  152 (354)
Q Consensus        73 ~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~p~~~~~k~Y~v~v~~~  152 (354)
                      .-++++|||.|+.++..=..-+..      ....++...|.||-..+|||++.-.-  +.++..--....|+|.+++.--
T Consensus         4 ~G~l~v~KP~g~tS~~vv~~~k~~------l~~kKvGh~GTLDP~AsGvL~i~ig~--aTK~~~~~~~~~K~Y~~~i~~G   75 (242)
T d1k8wa5           4 NGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGE--ATKFSQYLLDSDKRYRVIARLG   75 (242)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHH------TTCSCEEESSCCCTTCEEEEEEEEGG--GGGGTHHHHTSCEEEEEEEEET
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH------HCCCCCCCCCCCCCCCCCEEEEEECH--HHHHHHHHHHHHHEEEEEEEEC
T ss_conf             679999669989989999999998------28775784774798661107999763--3444355432113115999998


Q ss_pred             -------------------CCHHHHHHHHHHHH--------------CCCEEE------------EC-----CCEEEEEC
Q ss_conf             -------------------56467888740000--------------087675------------03-----43036402
Q gi|254780406|r  153 -------------------VDQDKLNLLKKGIV--------------IQGICY------------GD-----MQVTLDTQ  182 (354)
Q Consensus       153 -------------------~~~~~~~~~~~g~~--------------~~~~~~------------~~-----~~~~~~~~  182 (354)
                                         ++.+.+......+.              +++...            .+     ..+.+...
T Consensus        76 ~~TdT~D~~G~i~~~~~~~~~~~~i~~~l~~f~G~~~Q~PP~~SAvKv~GkraY~lAR~g~~v~~~~r~i~i~~l~~~~~  155 (242)
T d1k8wa5          76 QRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH  155 (242)
T ss_dssp             EEESSSBTTSCEEEECCCCCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEE
T ss_pred             CCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCC
T ss_conf             66665321011010146320057887757752620886165898888746899999986302343316899673011235


Q ss_pred             CCCEEEEEEEEEECCHHHHHHHHHHCC------CEEEEEEEEEECCEECCC
Q ss_conf             688079999995184289999999839------868688975870545187
Q gi|254780406|r  183 KGSNAWVTVGLREGKNREIKKVFEFFN------WKVNRLIRISYGPFQLGT  227 (354)
Q Consensus       183 ~~~~~~~~v~l~eGr~~qIrr~~~~~g------~~V~~L~Rv~~G~~~l~~  227 (354)
                      +.....|+|....|-|  ||.+..-+|      -.+..|.|+++|+|.+++
T Consensus       156 ~~~~~~f~v~cskGTY--IRsLa~DlG~~Lg~~a~l~~LrRt~~G~f~~~~  204 (242)
T d1k8wa5         156 EGNELELEIHCSKGTY--IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER  204 (242)
T ss_dssp             ETTEEEEEEEECTTCC--HHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGG
T ss_pred             CCCEEEEEEEECCCHH--HHHHHHHHHHHCCCCEEEEEEEEEEECCCCHHH
T ss_conf             4427999999755248--999999998755997897578980587888798

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Escherichia coli [TaxId: 562]