HHSEARCH alignment of GI: 254780406 and SCOP domain: d1kska3

Alignment

Probab=99.51  E-value=9.2e-15  Score=109.91  Aligned_cols=57  Identities=32%  Similarity=0.438  Sum_probs=54.8

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCCC
Q ss_conf             447889998868778999999986986999999240687807999799999892255
Q gi|254780406|r   14 QRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKA   70 (354)
Q Consensus        14 ~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~~   70 (354)
                      |||+||||+.|+|||++|++||++|+|+|||++|.+++++|+++|.|+|||++|...
T Consensus         1 mRLdk~l~~~~~~SR~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~dg~~l~~~   57 (59)
T d1kska3           1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ   57 (59)
T ss_dssp             EEHHHHHHHHHTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTEEECCC
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCEEEECCEEECCC
T ss_conf             948999988588799999999976918989999625986949999999999992135

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Escherichia coli [TaxId: 562]