HHSEARCH alignment of GI: 254780406 and SCOP domain: d1p9ka_

Alignment

Probab=99.40  E-value=1.1e-14  Score=109.45  Aligned_cols=60  Identities=17%  Similarity=0.304  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCEECCC
Q ss_conf             67734478899988687-7899999998698699999924068780799979999989225
Q gi|254780406|r   10 NFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRK   69 (354)
Q Consensus        10 ~~~~~RL~K~la~~g~~-SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~~i~~   69 (354)
                      +...+||+|||+.+|+| ||++|++||++|+|+|||+++++|+++|.++|.|+|||++|.+
T Consensus        17 ~~~~irL~k~L~~~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vdG~~i~i   77 (79)
T d1p9ka_          17 KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQV   77 (79)
T ss_dssp             SCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTEEEEE
T ss_pred             CCCCEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEECCEEEEE
T ss_conf             9982889999987788468999999999398603998936456349999999999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: YbcJ-like
domain: Hypothetical protein YbcJ
species: Escherichia coli [TaxId: 562]