RPSBLAST alignment for GI: 254780406 and conserved domain: COG1187
>gnl|CDD|31380 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]. Length = 248
Score = 220 bits (563), Expect = 3e-58
Identities = 91/236 (38%), Positives = 129/236 (54%), Gaps = 8/236 (3%)
Query: 12 TPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVM-STDHIEVDGVPLRKA 70
R++K +A AG+ SRRE E++I + RV VNG + V V D +EVDG +
Sbjct: 1 DSMRLNKFLAEAGVGSRREAEKLIEEGRVTVNGKVATLGGVVVDPDDDVVEVDGKRIELK 60
Query: 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLP---SIFSRVISVGRLDINTEGLLLLTND 127
E L +KP G V++ D +GR TVFD LP R+ VGRLD +TEGLLLLTND
Sbjct: 61 EERVYLLLNKPRGYVSSTEDDEGRPTVFDLLPERLPRKKRLFPVGRLDKDTEGLLLLTND 120
Query: 128 GGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYG--DMQVTLDTQKGS 185
G LA L PS++ + Y VR G V ++ L L+KG+ + +
Sbjct: 121 GELAHRLMHPSSEVEKEYLVRVEGPVTEEDLEKLRKGVTLDDGETKPAKPASLEKEPGKN 180
Query: 186 NAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGT--LLAGSTREVSKK 239
N+W+ + L EG+NR+++++FE +V RL RI GP LG L G RE++ +
Sbjct: 181 NSWLRITLTEGRNRQVRRMFEAVGLEVLRLKRIRIGPLSLGDLPLPPGEWRELTLE 236