RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780406|ref|YP_003064819.1| putative ribosomal large subunit pseudouridine synthase B [Candidatus Liberibacter asiaticus str. psy62] (354 letters) >3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} (A:64-290) Length = 227 Score = 101 bits (252), Expect = 1e-22 Identities = 45/234 (19%), Positives = 92/234 (39%), Gaps = 15/234 (6%) Query: 70 AERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGG 129 AE L +KP+G+V+ ++ R + D + RV +GRLD +++GL+ LTN G Sbjct: 1 AEDLVLIALNKPVGIVS-TTEDGERDNIVDFVNHSK-RVFPIGRLDKDSQGLIFLTNHGD 58 Query: 130 LARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWV 189 L + + Y V + ++ + + G+ I G + +K + Sbjct: 59 LVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCK----VKKEAPFVF 114 Query: 190 TVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVSK---KILREQLG 246 + L +G NR+I+++ E F ++V +L R L + G R+++ L + + Sbjct: 115 RITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIE 174 Query: 247 PHLLEEAQVNLDAPIYSSETLVRDRPNIISEVPDDFTRMKKNSSQKNGLSKQKK 300 E P + ++ + + +S + + Sbjct: 175 NSSSEVKPKAKAKPKT------AGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 222 >1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} (A:59-234) Length = 176 Score = 101 bits (251), Expect = 2e-22 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 3/176 (1%) Query: 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGL 130 R + +KP G V + DPD + ++ + ++ + GRLDI+T GL+L T+DG Sbjct: 3 HGPRYFXLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLXTDDGQW 62 Query: 131 ARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVT 190 + + P + Y V V D KG+ + + + V Sbjct: 63 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA--VLEVITPTQVR 120 Query: 191 VGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKKILREQL 245 + + EG+ ++K+ F V L R G L L G R ++++ + + Sbjct: 121 LTISEGRYHQVKRXFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 176 >2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli} (A:) Length = 237 Score = 100 bits (248), Expect = 4e-22 Identities = 42/244 (17%), Positives = 86/244 (35%), Gaps = 15/244 (6%) Query: 60 IEVDGVPLRKAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTE 119 + L +KP+G+V+ ++ R + D + RV +GRLD +++ Sbjct: 1 MGSSHHHHHHGSDLVLIALNKPVGIVS-TTEDGERDNIVDFVNHSK-RVFPIGRLDKDSQ 58 Query: 120 GLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTL 179 GL+ LTN G L + + Y V + ++ +G G + Sbjct: 59 GLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEF----IRGXSAGVPILGTVTKKC 114 Query: 180 DTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVSK- 238 +K + + L +G NR+I++ E F ++V +L R L + G R+++ Sbjct: 115 KVKKEAPFVFRITLVQGLNRQIRRXCEHFGYEVKKLERTRIXNVSLSGIPLGEWRDLTDD 174 Query: 239 --KILREQLGPHLLEEAQVNLDAPIYSSETLVRDRPNIISEVPDDFTRMKKNSSQKNGLS 296 L + + E P + + + + +S + Sbjct: 175 ELIDLFKLIENSSSEVKPKAKAKPKT------AGIKRPVVKXEKTAEKGGRPASNGKRFT 228 Query: 297 KQKK 300 + Sbjct: 229 SPGR 232 >1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} (A:58-243) Length = 186 Score = 93.5 bits (231), Expect = 3e-20 Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 3/173 (1%) Query: 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGL 130 E + ++ +KP G V ++ D D + + ++ S GRLD++T GL+LLT+DG Sbjct: 3 EEGQYFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQW 62 Query: 131 ARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVT 190 + + P + Y V V+++ +GI+++G L+ N +T Sbjct: 63 SHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEILDDYNVNLT 122 Query: 191 VGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLA-GSTREVSKKILR 242 + EG+ ++K++F KV L R G L L G R +++ + Sbjct: 123 --ISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIE 173 >1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} (A:) Length = 228 Score = 93.1 bits (230), Expect = 5e-20 Identities = 31/231 (13%), Positives = 60/231 (25%), Gaps = 33/231 (14%) Query: 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFS--RVISVGRLDINTEGLLLLTNDG 128 E + + +KP G + + V RLD +T G+LL+ Sbjct: 7 EDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKR 66 Query: 129 GLARVLELPSTQW--LRVYRVRFHGQVDQDKLNLL------------KKGIVIQGICYGD 174 R L + + Y GQ ++ + V Q + Sbjct: 67 SALRSLHEQLREKGXQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSE 126 Query: 175 MQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTR 234 + ++ + V G+ +I+ ++ + R F AG+ Sbjct: 127 TRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL 186 Query: 235 EVSKKILREQLGPHLLEEAQVNLDAPIYSSETLVRDRPNIISEVPDDFTRM 285 L A + P + I + + R Sbjct: 187 N-----------RLFLHAAALKFTHPGT------GEVXRIEAPXDEGLKRC 220 >1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} (A:) Length = 325 Score = 86.0 bits (211), Expect = 6e-18 Identities = 48/315 (15%), Positives = 91/315 (28%), Gaps = 43/315 (13%) Query: 1 MKDKNIVQENFTPQRVSKVIARAGI-ASRREVERMIAQQRVKVNGILLERAAVNVMSTDH 59 ++ V EN QR+ + +A SR ++ I QRV VNG + ++ V+ + Sbjct: 4 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 63 Query: 60 IEVDGVPLRKA-------------ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFS 106 + ++ +A E + + +KP LV + TV + L + Sbjct: 64 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 123 Query: 107 RVIS------VGRLDINTEGLLLLTNDGGLARVLELPSTQW--LRVYRVRFHGQVDQDKL 158 + V RLD +T GL+++ L + R Y G + Sbjct: 124 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 183 Query: 159 NL---------LKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLREGKNREIKKVFEFFN 209 V + + + + L G+ +I+ Sbjct: 184 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 243 Query: 210 WKVNRLIRISYGPFQLGTLLAGSTREVSKKILREQLGPHLLEEAQVNLDAPIYSSETLVR 269 + P + + L + L PI S + Sbjct: 244 HPLVGDPVYGGRPRPPKGASEAFISTLR------KFDRQALHATMLRLYHPI-SGIEME- 295 Query: 270 DRPNIISEVPDDFTR 284 + +P D Sbjct: 296 ----WHAPIPQDMVE 306 >2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli} (A:1-102,A:201-217) Length = 119 Score = 82.7 bits (204), Expect = 7e-17 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 10/111 (9%) Query: 28 RREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTRLWLYHKPIGLVTT 87 R+ + Q+ V + + TR+ L++KP ++ Sbjct: 2 RQFIISENTMQKTSFRNHQ-------VKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQ 53 Query: 88 HSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVLELPS 138 +D GR T+ + +P V + GRLD ++EGLL+LTN+G L L P Sbjct: 54 FTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG 102 >2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli} (A:) Length = 189 Score = 81.5 bits (200), Expect = 1e-16 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query: 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGL 130 + TR+ L++KP ++ +D GR T+ + +P GRLD ++EGLL+LTN+G L Sbjct: 9 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYA--AGRLDRDSEGLLVLTNNGAL 66 Query: 131 ARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQ-------------- 176 L P + ++Y V+ G QD L L+ G+ + Sbjct: 67 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 126 Query: 177 -VTLDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTRE 235 + + +W+ + L EG+NR+++++ + RLIR + G + L L G RE Sbjct: 127 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 186 Query: 236 VS 237 V+ Sbjct: 187 VT 188 >2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli} (A:) Length = 217 Score = 76.9 bits (188), Expect = 4e-15 Identities = 21/184 (11%), Positives = 51/184 (27%), Gaps = 16/184 (8%) Query: 58 DHIEVDGVPLR-KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF-SRVISVGRLD 115 ++ L + + + +KP GL++ + + SV RLD Sbjct: 3 NYNPPQEPWLVILYQDDHIXVVNKPSGLLSVPGRLEEHKDSVXTRIQRDYPQAESVHRLD 62 Query: 116 INTEGLLLLTNDGGLARVLELP--STQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYG 173 T G++++ R L+ + + Y R G + + I Sbjct: 63 XATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK 122 Query: 174 DMQVTLDTQK------------GSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYG 221 + + A V + G++ +++ + + Sbjct: 123 QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHXLALGHPILGDRFYASP 182 Query: 222 PFQL 225 + Sbjct: 183 EARA 186 >1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} (A:) Length = 133 Score = 70.5 bits (172), Expect = 3e-13 Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 8/131 (6%) Query: 6 IVQENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG 64 + ++ R+ K + A +R MI +V NG + + + ++ G Sbjct: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 Query: 65 VPLRKAERTRL-WLYHKPIGLVTTHSDPDGRS----TVFDNLPSIF-SRVISVGRLD-IN 117 R + + + + + R D Sbjct: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 Query: 118 TEGLLLLTNDG 128 LL + Sbjct: 121 RRDLLRFKHGD 131 >1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} (A:1-57) Length = 57 Score = 57.3 bits (139), Expect = 3e-09 Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 13 PQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPL 67 R+ K IA +R + + I Q VK+NG +++ +V + D I + L Sbjct: 2 SLRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELL 56 >1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} (A:1-58) Length = 58 Score = 56.1 bits (136), Expect = 7e-09 Identities = 18/53 (33%), Positives = 26/53 (49%) Query: 15 RVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPL 67 R+ K IA+ SR R I RV V+G ++ AA ++ + DG PL Sbjct: 5 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL 57 >3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} (A:1-63) Length = 63 Score = 53.9 bits (130), Expect = 3e-08 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 13 PQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAE 71 R++K I+ +GI SRRE +R I Q V +NG V D ++V+G + E Sbjct: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPRE 63 >1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} (A:) Length = 79 Score = 50.1 bits (120), Expect = 4e-07 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 6 IVQENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG 64 + ++ G + S + + IA+ +VKV+G + R +++ + G Sbjct: 13 FSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 Query: 65 VPLR 68 ++ Sbjct: 73 HSVQ 76 >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} (A:345-432) Length = 88 Score = 48.2 bits (115), Expect = 2e-06 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%) Query: 13 PQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAE 71 P + ++ +G++ S+ R I + V VN I ++ S+D + + LR+ + Sbjct: 11 PDGIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFLHGRWLVLRRGK 70 Query: 72 RTRLWLYHKPIGLVTTHSDPDGR 94 R+ V Sbjct: 71 RS----IA----GVERIGLEHHH 85 >2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli} (A:103-200) Length = 98 Score = 45.4 bits (107), Expect = 1e-05 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 15/94 (15%) Query: 143 RVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQK---------------GSNA 187 ++Y V+ G QD L L+ G+ + L + + Sbjct: 5 KIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTS 64 Query: 188 WVTVGLREGKNREIKKVFEFFNWKVNRLIRISYG 221 W+ + L EG+NR+++++ + RLIR + G Sbjct: 65 WLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 98 >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} (A:1-65) Length = 65 Score = 42.8 bits (101), Expect = 6e-05 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 9 ENFTPQRVSKVIARAGIA-SRREVERMIAQQRV--KVNGILLERAAVNVMSTDHIEVDGV 65 +RV + + G+ +R + +R + V +NG ++ + +++ G Sbjct: 2 NAXPKERVDVLAYKQGLFETREQAKRGVXAGLVVNVINGERYDKPGEKIDDGTELKLKGE 61 Query: 66 PLR 68 LR Sbjct: 62 KLR 64 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} (A:350-432) Length = 83 Score = 35.8 bits (83), Expect = 0.008 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 15 RVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEV 62 V+++ AG+ S E R+I + ++++G +L + V + + Sbjct: 21 WVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRIL 69 >1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} (A:247-420) Length = 174 Score = 34.6 bits (79), Expect = 0.022 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 1 MKDKNIVQENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDH 59 KD V + + +V+ GI+ S+R+ + + +NG + + D Sbjct: 94 FKDVPQVTLSNDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDK 153 Query: 60 IEVDGVPLRK 69 I+ + +R+ Sbjct: 154 IDGEFTIIRR 163 >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} (A:246-419) Length = 174 Score = 33.8 bits (77), Expect = 0.032 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 1 MKDKNIVQENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDH 59 KD + +++ AGI+ S+R+ I + VNG L+ + + Sbjct: 94 FKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 153 Query: 60 IEVDGVPLRK 69 +E +R+ Sbjct: 154 LEGRFTVIRR 163 >2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (D:100-193) Length = 94 Score = 30.2 bits (68), Expect = 0.38 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 15 RVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEV 62 R+ V+ R G A SRR+ +++ + VNG ++ + V D I V Sbjct: 1 RLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAV 49 >2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 71 Score = 30.0 bits (68), Expect = 0.51 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Query: 9 ENFTPQRVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAA--VNVMSTDHIEV 62 + +R+ V+ + +A + + Q V+V ++ A V D + Sbjct: 3 SGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTW 59 >2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} (A:) Length = 92 Score = 28.4 bits (63), Expect = 1.4 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 15 RVSKVIARAGIA-SRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEV 62 R+ K + G+ R M V +NG +A+ V + D I + Sbjct: 2 RIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISL 49 >1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} (A:) Length = 121 Score = 28.2 bits (63), Expect = 1.6 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 15/81 (18%) Query: 174 DMQVTLDTQKGSNAWVTVGLREGK-NREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGS 232 MQV+++T +G VT+ + +K V + +RI + G Sbjct: 3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELV----NVAKKVRID--GLRKG------ 50 Query: 233 TREVSKKILREQLGPHLLEEA 253 +V I+ ++ G + ++ Sbjct: 51 --KVPMNIVAQRYGASVRQDV 69 >3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (C:246-343) Length = 98 Score = 26.7 bits (59), Expect = 4.6 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 6/82 (7%) Query: 130 LARVLELPSTQWLRVYRVRFHGQVDQDKL--NLLKKGIVIQGICYGDMQVTLDTQKGSNA 187 R+ P T + + R+ F GQ L ++ V I M + G Sbjct: 9 QERLQAEPFTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFG--- 65 Query: 188 WVTVGLREGKNREIKKVFEFFN 209 + + G ++ + + Sbjct: 66 IMLTEM-HGTQQDTQAAIAWLQ 86 >3e4v_A NADH:FMN oxidoreductase like protein; YP_544701.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.40A {Methylobacillus flagellatus KT} (A:) Length = 186 Score = 26.1 bits (57), Expect = 7.4 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 7/34 (20%) Query: 61 EVDGVPLRKAERTRLWLYHKPIGLVTTHSDPDGR 94 E+ + L PI LV+T DGR Sbjct: 5 ELPPENAYRI------LESGPIVLVSTR-GADGR 31 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.134 0.385 Gapped Lambda K H 0.267 0.0710 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,602,391 Number of extensions: 117932 Number of successful extensions: 277 Number of sequences better than 10.0: 1 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 31 Length of query: 354 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 265 Effective length of database: 1,947,404 Effective search space: 516062060 Effective search space used: 516062060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.0 bits)