RPSBLAST alignment of GI: 254780406 and protein with PDBid: 1ksk
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Length = 234
Score = 161 bits (409), Expect = 2e-40
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 3/226 (1%)
Query: 15 RVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTR 74
R+ K IA+ SR R I RV V+G ++ AA ++ + DG PL + R
Sbjct: 5 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 64
Query: 75 LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVL 134
++ +KP G V + DPD + ++ + ++ + GRLDI+T GL+L+T+DG + +
Sbjct: 65 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 124
Query: 135 ELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLR 194
P + Y V V D KG+ + + + V + +
Sbjct: 125 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA--VLEVITPTQVRLTIS 182
Query: 195 EGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKK 239
EG+ ++K++F V L R G L L G R ++++
Sbjct: 183 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE 228