RPSBLAST alignment of GI: 254780406 and protein with PDBid: 1ksk

>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Length = 234
 Score =  161 bits (409), Expect = 2e-40
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 3/226 (1%)

Query: 15  RVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTR 74
           R+ K IA+    SR    R I   RV V+G ++  AA  ++    +  DG PL +    R
Sbjct: 5   RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 64

Query: 75  LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVL 134
            ++ +KP G V +  DPD  + ++     +  ++ + GRLDI+T GL+L+T+DG  +  +
Sbjct: 65  YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 124

Query: 135 ELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLR 194
             P     + Y V     V  D      KG+ +              +  +   V + + 
Sbjct: 125 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA--VLEVITPTQVRLTIS 182

Query: 195 EGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKK 239
           EG+  ++K++F      V  L R   G   L   L  G  R ++++
Sbjct: 183 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE 228