RPSBLAST alignment of GI: 254780406 and protein with PDBid: 1v9f

>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Length = 325

 Score = 47.7 bits (112), Expect = 4e-06
 Identities = 49/311 (15%), Positives = 92/311 (29%), Gaps = 43/311 (13%)

Query: 6   IVQENFTPQRVSKVIARA-GIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDG 64
            V EN   QR+ + +A      SR  ++  I  QRV VNG + ++    V+  + + ++ 
Sbjct: 9   TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68

Query: 65  VPLRKAERT-------------RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVIS- 110
               +A                 + + +KP  LV      +   TV + L   +  +   
Sbjct: 69  EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 128

Query: 111 -----VGRLDINTEGLLLLTNDGGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGI 165
                V RLD +T GL+++         L     +                    + + I
Sbjct: 129 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 188

Query: 166 VIQGICYGDMQVT-----------LDTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNR 214
                    M V            +      +  + + L  G+  +I+         +  
Sbjct: 189 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV- 247

Query: 215 LIRISYGPFQLGTLLAGSTREVSKKILREQLGPHLLEEAQVNLDAPIYSSETLVRDRPNI 274
                YG        A      + +    Q     L    + L  PI S   +       
Sbjct: 248 -GDPVYGGRPRPPKGASEAFISTLRKFDRQ----ALHATMLRLYHPI-SGIEM-----EW 296

Query: 275 ISEVPDDFTRM 285
            + +P D   +
Sbjct: 297 HAPIPQDMVEL 307