RPSBLAST alignment of GI: 254780406 and protein with PDBid: 1vio

>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 Length = 243

 Score =  116 bits (291), Expect = 6e-27
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 3/226 (1%)

Query: 15  RVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGVPLRKAERTR 74
           R+ K IA     +R +  + I Q  VK+NG +++  +V +   D I  +   L   E  +
Sbjct: 4   RLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQ 63

Query: 75  LWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARVL 134
            ++ +KP G V ++ D D  +        +  ++ S GRLD++T GL+LLT+DG  +  +
Sbjct: 64  YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRI 123

Query: 135 ELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGLR 194
             P     + Y V     V+++      +GI+++G         L+     N  +T+   
Sbjct: 124 TSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEILDDYNVNLTI--S 181

Query: 195 EGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLA-GSTREVSKK 239
           EG+  ++K++F     KV  L R   G   L   L  G  R +++ 
Sbjct: 182 EGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQS 227