RPSBLAST alignment of GI: 254780406 and SCOP domain: d1kska4

Alignment

 Score =  118 bits (296), Expect = 7e-28
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 74  RLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLARV 133
           R ++ +KP G V +  DPD  + ++     +  ++ + GRLDI+T GL+L+T+DG  +  
Sbjct: 2   RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 61

Query: 134 LELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNAWVTVGL 193
           +  P     + Y V     V  D      KG+ +           L+    +   +T  +
Sbjct: 62  ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 119

Query: 194 REGKNREIKKVFEFFNWKVNRLIRISYGPFQL-GTLLAGSTREVSKK 239
            EG+  ++K++F      V  L R   G   L   L  G  R ++++
Sbjct: 120 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE 166

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal small subunit pseudouridine 516 synthase RsuA
species: Escherichia coli [TaxId: 562]