RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780407|ref|YP_003064820.1| hypothetical protein
CLIBASIA_01460 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)



>gnl|CDD|30526 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA
          replication, recombination, and repair].
          Length = 211

 Score = 25.5 bits (56), Expect = 3.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 6  DIKALIRDGGLHRTESRLIIVCS 28
          +++ LI+  GL+R +++ I   +
Sbjct: 71 ELEELIKSIGLYRNKAKNIKELA 93


>gnl|CDD|36057 KOG0839, KOG0839, KOG0839, RNA Methylase, SpoU family [RNA processing
            and modification].
          Length = 1477

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 4    DIDIKALIRDGGLHRTESRLIIVCSF--RMPNL 34
            D+D K       L    S LI+V S   + PNL
Sbjct: 1308 DLDNKKSNDVARLGVGRSSLIVVASLVDKPPNL 1340


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.328    0.145    0.432 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 542,028
Number of extensions: 17095
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 45
Length of database: 6,263,737
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,874,775
Effective search space: 158618925
Effective search space used: 158618925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)