Query gi|254780408|ref|YP_003064821.1| hypothetical protein CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 75 No_of_seqs 115 out of 255 Neff 3.2 Searched_HMMs 13730 Date Wed Jun 1 04:04:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780408.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2d3na1 b.71.1.1 (A:399-485) B 10.4 41 0.003 14.0 0.9 12 61-72 16-29 (87) 2 d1ud2a1 b.71.1.1 (A:391-480) B 9.7 45 0.0032 13.8 0.9 12 61-72 19-32 (90) 3 d2r9ga1 a.80.1.2 (A:238-423) U 9.6 56 0.004 13.3 1.4 26 44-69 148-173 (186) 4 d1adta2 g.51.1.1 (A:266-385) F 5.4 67 0.0049 12.9 0.1 21 18-38 31-51 (120) 5 d1e43a1 b.71.1.1 (A:394-483) B 5.3 97 0.0071 12.0 0.9 12 61-72 19-32 (90) 6 d1el6a_ d.182.1.1 (A:) Basepla 3.9 78 0.0057 12.5 -0.4 10 62-71 178-187 (208) 7 d1omha_ d.89.1.5 (A:) TrwC rel 2.9 1.3E+02 0.0093 11.4 -0.2 15 58-72 211-225 (293) 8 d1m0da_ c.52.1.17 (A:) Endonuc 2.5 1.4E+02 0.01 11.1 -0.4 6 61-66 91-96 (129) 9 d1zsoa1 b.166.1.1 (A:1-156) Hy 2.3 92 0.0067 12.1 -1.5 15 56-70 102-119 (156) 10 d2f9zc1 d.194.1.3 (C:1-157) Ch 2.1 2.1E+02 0.016 10.2 0.7 17 48-66 47-63 (157) No 1 >d2d3na1 b.71.1.1 (A:399-485) Bacterial alpha-Amylase {Bacillus sp. 707 [TaxId: 1416]} Probab=10.38 E-value=41 Score=13.98 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=8.8 Q ss_pred CCCCCHHCC--CEE Q ss_conf 433610007--865 Q gi|254780408|r 61 TRFGDWEKN--GIS 72 (75) Q Consensus 61 tRyGDWE~k--G~~ 72 (75) ||+||.++. |.+ T Consensus 16 vR~G~~~hp~sGlA 29 (87) T d2d3na1 16 TREGNTAHPNSGLA 29 (87) T ss_dssp EECCCTTSTTCCEE T ss_pred EECCCCCCCCCCEE T ss_conf 95187668997889 No 2 >d1ud2a1 b.71.1.1 (A:391-480) Bacterial alpha-Amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Probab=9.72 E-value=45 Score=13.78 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=8.7 Q ss_pred CCCCCHHCC--CEE Q ss_conf 433610007--865 Q gi|254780408|r 61 TRFGDWEKN--GIS 72 (75) Q Consensus 61 tRyGDWE~k--G~~ 72 (75) ||+||+++. |.+ T Consensus 19 vR~G~~~~p~sGlA 32 (90) T d1ud2a1 19 TREGSSSRPNSGLA 32 (90) T ss_dssp EECCCTTSTTCCEE T ss_pred EEECCCCCCCCCEE T ss_conf 98478678997789 No 3 >d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]} Probab=9.63 E-value=56 Score=13.28 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=19.6 Q ss_pred HHHCCCHHCCCCCCCCCCCCCCHHCC Q ss_conf 22106510188889986433610007 Q gi|254780408|r 44 KDAKLPIEIGGRKGLDPTRFGDWEKN 69 (75) Q Consensus 44 ~~~~~pkE~gG~~G~ePtRyGDWE~k 69 (75) .+.=+|.++.|..=-+|+-.|.||++ T Consensus 148 ~Q~YLP~~L~~~~fY~P~~~G~~E~~ 173 (186) T d2r9ga1 148 NQQYLPDKLKNAQYYQPKDTGKYEQA 173 (186) T ss_dssp CCCCSCGGGTTCCCCCCCCSSHHHHH T ss_pred CCCCCCCCCCCCCEECCCCCCHHHHH T ss_conf 32579967899804248999889999 No 4 >d1adta2 g.51.1.1 (A:266-385) First Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]} Probab=5.36 E-value=67 Score=12.87 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=15.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHH Q ss_conf 575445899999999999997 Q gi|254780408|r 18 KTSHDPLSSIAKRALEEAKQR 38 (75) Q Consensus 18 ~~~~~~ls~aA~rAL~Ea~~r 38 (75) ....++-|+..+|||+|.-.| T Consensus 31 ~vEmd~tSE~GqrALkE~~~r 51 (120) T d1adta2 31 VIEMDVTSENGQRALKEQSSK 51 (120) T ss_dssp C-------------------- T ss_pred EEEECCCCHHHHHHHHCCCCC T ss_conf 788176657789886428886 No 5 >d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus licheniformis [TaxId: 1402]} Probab=5.33 E-value=97 Score=12.00 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=7.7 Q ss_pred CCCCCHHCC--CEE Q ss_conf 433610007--865 Q gi|254780408|r 61 TRFGDWEKN--GIS 72 (75) Q Consensus 61 tRyGDWE~k--G~~ 72 (75) ||+||.|+. |.+ T Consensus 19 vR~G~~~~~~sGla 32 (90) T d1e43a1 19 TREGDSSVANSGLA 32 (90) T ss_dssp EECCCTTSTTCCEE T ss_pred EECCCCCCCCCCEE T ss_conf 95488568998889 No 6 >d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11 {Bacteriophage T4 [TaxId: 10665]} Probab=3.95 E-value=78 Score=12.51 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=5.7 Q ss_pred CCCCHHCCCE Q ss_conf 3361000786 Q gi|254780408|r 62 RFGDWEKNGI 71 (75) Q Consensus 62 RyGDWE~kG~ 71 (75) -||-|+.-|- T Consensus 178 GYG~W~~lG~ 187 (208) T d1el6a_ 178 GYGTWNLLGA 187 (208) T ss_dssp CCSCEEEEEE T ss_pred CCCHHHHHCC T ss_conf 8543776172 No 7 >d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]} Probab=2.85 E-value=1.3e+02 Score=11.38 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=10.5 Q ss_pred CCCCCCCCHHCCCEE Q ss_conf 986433610007865 Q gi|254780408|r 58 LDPTRFGDWEKNGIS 72 (75) Q Consensus 58 ~ePtRyGDWE~kG~~ 72 (75) .++++.|.||+.|+- T Consensus 211 ~~~~~~g~~EI~Gv~ 225 (293) T d1omha_ 211 LRYGKDGNFDLAHID 225 (293) T ss_dssp EEECSSSCEEETTSC T ss_pred EEECCCCCEEECCCC T ss_conf 754688843676899 No 8 >d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]} Probab=2.45 E-value=1.4e+02 Score=11.13 Aligned_cols=6 Identities=33% Similarity=1.127 Sum_probs=0.0 Q ss_pred CCCCCH Q ss_conf 433610 Q gi|254780408|r 61 TRFGDW 66 (75) Q Consensus 61 tRyGDW 66 (75) |.||+| T Consensus 91 tTYa~W 96 (129) T d1m0da_ 91 TSYGEF 96 (129) T ss_dssp CBHHHH T ss_pred CCHHHH T ss_conf 749999 No 9 >d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Probab=2.33 E-value=92 Score=12.14 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=0.0 Q ss_pred CCCCCCCC---CCHHCCC Q ss_conf 89986433---6100078 Q gi|254780408|r 56 KGLDPTRF---GDWEKNG 70 (75) Q Consensus 56 ~G~ePtRy---GDWE~kG 70 (75) .|+||+-| |.|..+| T Consensus 102 RGlEp~eF~p~~~w~a~~ 119 (156) T d1zsoa1 102 RGIELIDFFPSNNFIVED 119 (156) T ss_dssp ESEEEEEECCCSCEEEEE T ss_pred CCCEEEEEECCCCEEEEE T ss_conf 885768884589889997 No 10 >d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD {Thermotoga maritima [TaxId: 2336]} Probab=2.08 E-value=2.1e+02 Score=10.21 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=0.0 Q ss_pred CCHHCCCCCCCCCCCCCCH Q ss_conf 6510188889986433610 Q gi|254780408|r 48 LPIEIGGRKGLDPTRFGDW 66 (75) Q Consensus 48 ~pkE~gG~~G~ePtRyGDW 66 (75) +|..-+...- |.||||+ T Consensus 47 LP~~~~~~~~--~~rY~d~ 63 (157) T d2f9zc1 47 LPDSGGKTDK--PGKYADT 63 (157) T ss_dssp BSCCSSCCSC--GGGBHHH T ss_pred CCCCCCCCCC--HHHHHHH T ss_conf 8999999995--0668999 Done!