Query         gi|254780408|ref|YP_003064821.1| hypothetical protein CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs    115 out of 255
Neff          3.2 
Searched_HMMs 13730
Date          Wed Jun  1 04:04:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780408.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2d3na1 b.71.1.1 (A:399-485) B  10.4      41   0.003   14.0   0.9   12   61-72     16-29  (87)
  2 d1ud2a1 b.71.1.1 (A:391-480) B   9.7      45  0.0032   13.8   0.9   12   61-72     19-32  (90)
  3 d2r9ga1 a.80.1.2 (A:238-423) U   9.6      56   0.004   13.3   1.4   26   44-69    148-173 (186)
  4 d1adta2 g.51.1.1 (A:266-385) F   5.4      67  0.0049   12.9   0.1   21   18-38     31-51  (120)
  5 d1e43a1 b.71.1.1 (A:394-483) B   5.3      97  0.0071   12.0   0.9   12   61-72     19-32  (90)
  6 d1el6a_ d.182.1.1 (A:) Basepla   3.9      78  0.0057   12.5  -0.4   10   62-71    178-187 (208)
  7 d1omha_ d.89.1.5 (A:) TrwC rel   2.9 1.3E+02  0.0093   11.4  -0.2   15   58-72    211-225 (293)
  8 d1m0da_ c.52.1.17 (A:) Endonuc   2.5 1.4E+02    0.01   11.1  -0.4    6   61-66     91-96  (129)
  9 d1zsoa1 b.166.1.1 (A:1-156) Hy   2.3      92  0.0067   12.1  -1.5   15   56-70    102-119 (156)
 10 d2f9zc1 d.194.1.3 (C:1-157) Ch   2.1 2.1E+02   0.016   10.2   0.7   17   48-66     47-63  (157)

No 1  
>d2d3na1 b.71.1.1 (A:399-485) Bacterial alpha-Amylase {Bacillus sp. 707 [TaxId: 1416]}
Probab=10.38  E-value=41  Score=13.98  Aligned_cols=12  Identities=33%  Similarity=0.523  Sum_probs=8.8

Q ss_pred             CCCCCHHCC--CEE
Q ss_conf             433610007--865
Q gi|254780408|r   61 TRFGDWEKN--GIS   72 (75)
Q Consensus        61 tRyGDWE~k--G~~   72 (75)
                      ||+||.++.  |.+
T Consensus        16 vR~G~~~hp~sGlA   29 (87)
T d2d3na1          16 TREGNTAHPNSGLA   29 (87)
T ss_dssp             EECCCTTSTTCCEE
T ss_pred             EECCCCCCCCCCEE
T ss_conf             95187668997889


No 2  
>d1ud2a1 b.71.1.1 (A:391-480) Bacterial alpha-Amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}
Probab=9.72  E-value=45  Score=13.78  Aligned_cols=12  Identities=33%  Similarity=0.545  Sum_probs=8.7

Q ss_pred             CCCCCHHCC--CEE
Q ss_conf             433610007--865
Q gi|254780408|r   61 TRFGDWEKN--GIS   72 (75)
Q Consensus        61 tRyGDWE~k--G~~   72 (75)
                      ||+||+++.  |.+
T Consensus        19 vR~G~~~~p~sGlA   32 (90)
T d1ud2a1          19 TREGSSSRPNSGLA   32 (90)
T ss_dssp             EECCCTTSTTCCEE
T ss_pred             EEECCCCCCCCCEE
T ss_conf             98478678997789


No 3  
>d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=9.63  E-value=56  Score=13.28  Aligned_cols=26  Identities=19%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             HHHCCCHHCCCCCCCCCCCCCCHHCC
Q ss_conf             22106510188889986433610007
Q gi|254780408|r   44 KDAKLPIEIGGRKGLDPTRFGDWEKN   69 (75)
Q Consensus        44 ~~~~~pkE~gG~~G~ePtRyGDWE~k   69 (75)
                      .+.=+|.++.|..=-+|+-.|.||++
T Consensus       148 ~Q~YLP~~L~~~~fY~P~~~G~~E~~  173 (186)
T d2r9ga1         148 NQQYLPDKLKNAQYYQPKDTGKYEQA  173 (186)
T ss_dssp             CCCCSCGGGTTCCCCCCCCSSHHHHH
T ss_pred             CCCCCCCCCCCCCEECCCCCCHHHHH
T ss_conf             32579967899804248999889999


No 4  
>d1adta2 g.51.1.1 (A:266-385) First Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Probab=5.36  E-value=67  Score=12.87  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=15.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHH
Q ss_conf             575445899999999999997
Q gi|254780408|r   18 KTSHDPLSSIAKRALEEAKQR   38 (75)
Q Consensus        18 ~~~~~~ls~aA~rAL~Ea~~r   38 (75)
                      ....++-|+..+|||+|.-.|
T Consensus        31 ~vEmd~tSE~GqrALkE~~~r   51 (120)
T d1adta2          31 VIEMDVTSENGQRALKEQSSK   51 (120)
T ss_dssp             C--------------------
T ss_pred             EEEECCCCHHHHHHHHCCCCC
T ss_conf             788176657789886428886


No 5  
>d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus licheniformis [TaxId: 1402]}
Probab=5.33  E-value=97  Score=12.00  Aligned_cols=12  Identities=42%  Similarity=0.556  Sum_probs=7.7

Q ss_pred             CCCCCHHCC--CEE
Q ss_conf             433610007--865
Q gi|254780408|r   61 TRFGDWEKN--GIS   72 (75)
Q Consensus        61 tRyGDWE~k--G~~   72 (75)
                      ||+||.|+.  |.+
T Consensus        19 vR~G~~~~~~sGla   32 (90)
T d1e43a1          19 TREGDSSVANSGLA   32 (90)
T ss_dssp             EECCCTTSTTCCEE
T ss_pred             EECCCCCCCCCCEE
T ss_conf             95488568998889


No 6  
>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11 {Bacteriophage T4 [TaxId: 10665]}
Probab=3.95  E-value=78  Score=12.51  Aligned_cols=10  Identities=30%  Similarity=0.883  Sum_probs=5.7

Q ss_pred             CCCCHHCCCE
Q ss_conf             3361000786
Q gi|254780408|r   62 RFGDWEKNGI   71 (75)
Q Consensus        62 RyGDWE~kG~   71 (75)
                      -||-|+.-|-
T Consensus       178 GYG~W~~lG~  187 (208)
T d1el6a_         178 GYGTWNLLGA  187 (208)
T ss_dssp             CCSCEEEEEE
T ss_pred             CCCHHHHHCC
T ss_conf             8543776172


No 7  
>d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]}
Probab=2.85  E-value=1.3e+02  Score=11.38  Aligned_cols=15  Identities=20%  Similarity=0.301  Sum_probs=10.5

Q ss_pred             CCCCCCCCHHCCCEE
Q ss_conf             986433610007865
Q gi|254780408|r   58 LDPTRFGDWEKNGIS   72 (75)
Q Consensus        58 ~ePtRyGDWE~kG~~   72 (75)
                      .++++.|.||+.|+-
T Consensus       211 ~~~~~~g~~EI~Gv~  225 (293)
T d1omha_         211 LRYGKDGNFDLAHID  225 (293)
T ss_dssp             EEECSSSCEEETTSC
T ss_pred             EEECCCCCEEECCCC
T ss_conf             754688843676899


No 8  
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=2.45  E-value=1.4e+02  Score=11.13  Aligned_cols=6  Identities=33%  Similarity=1.127  Sum_probs=0.0

Q ss_pred             CCCCCH
Q ss_conf             433610
Q gi|254780408|r   61 TRFGDW   66 (75)
Q Consensus        61 tRyGDW   66 (75)
                      |.||+|
T Consensus        91 tTYa~W   96 (129)
T d1m0da_          91 TSYGEF   96 (129)
T ss_dssp             CBHHHH
T ss_pred             CCHHHH
T ss_conf             749999


No 9  
>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=2.33  E-value=92  Score=12.14  Aligned_cols=15  Identities=13%  Similarity=0.477  Sum_probs=0.0

Q ss_pred             CCCCCCCC---CCHHCCC
Q ss_conf             89986433---6100078
Q gi|254780408|r   56 KGLDPTRF---GDWEKNG   70 (75)
Q Consensus        56 ~G~ePtRy---GDWE~kG   70 (75)
                      .|+||+-|   |.|..+|
T Consensus       102 RGlEp~eF~p~~~w~a~~  119 (156)
T d1zsoa1         102 RGIELIDFFPSNNFIVED  119 (156)
T ss_dssp             ESEEEEEECCCSCEEEEE
T ss_pred             CCCEEEEEECCCCEEEEE
T ss_conf             885768884589889997


No 10 
>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD {Thermotoga maritima [TaxId: 2336]}
Probab=2.08  E-value=2.1e+02  Score=10.21  Aligned_cols=17  Identities=29%  Similarity=0.476  Sum_probs=0.0

Q ss_pred             CCHHCCCCCCCCCCCCCCH
Q ss_conf             6510188889986433610
Q gi|254780408|r   48 LPIEIGGRKGLDPTRFGDW   66 (75)
Q Consensus        48 ~pkE~gG~~G~ePtRyGDW   66 (75)
                      +|..-+...-  |.||||+
T Consensus        47 LP~~~~~~~~--~~rY~d~   63 (157)
T d2f9zc1          47 LPDSGGKTDK--PGKYADT   63 (157)
T ss_dssp             BSCCSSCCSC--GGGBHHH
T ss_pred             CCCCCCCCCC--HHHHHHH
T ss_conf             8999999995--0668999


Done!