RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780408|ref|YP_003064821.1| hypothetical protein
CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>gnl|CDD|35067 COG5508, COG5508, Uncharacterized conserved small protein
          [Function unknown].
          Length = 84

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 23 PLSSIAKRALEEAKQRKSANN-KDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
           L+  A+RAL+EA+ R++A+  K+  LP EIGGR GL+PTR+GDWE  G  IDF
Sbjct: 31 DLTPAAQRALKEAEARRAASEEKNLSLPKEIGGRGGLEPTRYGDWEHKGRVIDF 84


>gnl|CDD|38455 KOG3245, KOG3245, KOG3245, Uncharacterized conserved protein
           [Function unknown].
          Length = 106

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 51  EIGGRKGLDPTRFGDWEKNGISIDF 75
           EIGG +G +PTR+GDWE+ G   DF
Sbjct: 82  EIGGPRGPEPTRYGDWERKGRCSDF 106


>gnl|CDD|32232 COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid
           transport and metabolism].
          Length = 223

 Score = 29.8 bits (67), Expect = 0.16
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 1   MRTVQINIRGLMNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDP 60
            R++ +           +     L    +   EE +  ++A  +  ++P+  GG  G D 
Sbjct: 47  YRSLLVIYDPP------RLDPQELLERLRALWEEIEALEAAGIRLIEIPVVYGGEYGPDL 100

Query: 61  TRFGDWEKNGISID 74
                   NG+S++
Sbjct: 101 AEVA--RHNGLSVE 112


>gnl|CDD|145701 pfam02682, AHS1, Allophanate hydrolase subunit 1.  This family is
           the first subunit of allophanate hydrolase.
          Length = 202

 Score = 26.3 bits (59), Expect = 1.6
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 12/76 (15%)

Query: 1   MRTVQINIRGLMNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDP 60
            R++ ++   L            L ++ K  L EA    +A ++  ++P+  GG  G D 
Sbjct: 49  YRSLLVHFDPL------VIDRAALLALLKALLAEAAAALAAPSRIIEIPVCYGGEFGPDL 102

Query: 61  TRFGDW--EKNGISID 74
               +   E NG+S++
Sbjct: 103 ----EEVAEHNGLSVE 114


>gnl|CDD|33337 COG3535, COG3535, Uncharacterized conserved protein [Function
           unknown].
          Length = 357

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 10  GLMNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDP 60
           G+M    +     P    A RA E   +       DA + IEIGG   L P
Sbjct: 63  GMMGAPIVGIEKLPNGDEAIRAFEVL-EDYLGKPVDAIISIEIGGINSLIP 112


>gnl|CDD|31674 COG1485, COG1485, Predicted ATPase [General function prediction
           only].
          Length = 367

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 21  HDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRK 56
             PL + A+ AL++     S    +A   +EI GR+
Sbjct: 219 LTPLDAEAEAALDKLWAALSDGAPEAAANLEIKGRE 254


>gnl|CDD|113683 pfam04919, DUF655, Protein of unknown function, DUF655.  This
           family includes several uncharacterized archaeal
           proteins.
          Length = 181

 Score = 23.9 bits (52), Expect = 8.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 17  IKTSHDPLSSIAKRALEEAKQRK 39
           +K  HDP+  I +R +EE +   
Sbjct: 151 VKGLHDPVKIIVERIIEELRDPT 173


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 819,280
Number of extensions: 30837
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 17
Length of query: 75
Length of database: 6,263,737
Length adjustment: 46
Effective length of query: 29
Effective length of database: 5,269,723
Effective search space: 152821967
Effective search space used: 152821967
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)