RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780408|ref|YP_003064821.1| hypothetical protein
CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>gnl|CDD|149136 pfam07896, DUF1674, Protein of unknown function (DUF1674).  The
          members of this family are sequences derived from
          hypothetical eukaryotic and bacterial proteins. The
          region in question is approximately 60 residues long.
          Length = 41

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 34 EAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
          EA++R+ A  K A  P EIGG KG +PTR+GDWE+ G   DF
Sbjct: 1  EAEERRPAARK-AVNPGEIGGPKGPEPTRYGDWERKGRVTDF 41


>gnl|CDD|150296 pfam09582, AnfO_nitrog, Iron only nitrogenase protein AnfO
           (AnfO_nitrog).  Proteins in this entry include Anf1 from
           Rhodobacter capsulatus (Rhodopseudomonas capsulata) and
           AnfO from Azotobacter vinelandii. They are found
           exclusively in species which contain the iron-only
           nitrogenase, and are encoded immediately downstream of
           the structural genes for the nitrogenase enzyme in these
           species.
          Length = 201

 Score = 28.4 bits (64), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 21  HDPLSSIAKRALEEAKQRKSA----NNKDAKLPIEIG-GRKGLD 59
            D L  +A++  EEAK+ + A     N D  +P+E+G GR  LD
Sbjct: 96  LDFLDYVAEKEEEEAKKEREAADEPPNFDIPVPLELGDGRFRLD 139


>gnl|CDD|185245 PRK15347, PRK15347, two component system sensor kinase SsrA;
           Provisional.
          Length = 921

 Score = 26.1 bits (58), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 15  STIKTSHDPLSS-IAKR--ALEEAKQRKSANNK 44
            T+   +D L + +A+R  AL EAKQR    NK
Sbjct: 364 DTLNEQYDTLENKVAERTQALAEAKQRAEQANK 396


>gnl|CDD|162741 TIGR02170, thyX, thymidylate synthase, flavin-dependent.  Two forms
           of microbial thymidylate synthase are known: ThyA
           (2.1.1.45) and ThyX (2.1.1.148). This model describes
           ThyX, a homotetrameric flavoprotein. Both enzymes
           convert dUMP to dTMP. Under oxygen-limiting conditions,
           thyX can complement a thyA mutation.
          Length = 209

 Score = 25.4 bits (56), Expect = 3.7
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 3   TVQINIRGLMNNSTIKTSHDPLSSI---AKRALEEAKQ 37
            V  N R LM+   ++ S+D    I   A+  L+  K+
Sbjct: 163 VVTGNARALMHFLDLRASNDAQWEIRELAEAMLDIVKE 200


>gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
          Length = 136

 Score = 24.1 bits (53), Expect = 8.4
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 28  AKRALEEAKQR-KSANNKDAKLPIE 51
           A+ ALE A+QR K    +D     E
Sbjct: 94  ARAALERAEQRLKKLTPEDDSARAE 118


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,148,543
Number of extensions: 54597
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 14
Length of query: 75
Length of database: 5,994,473
Length adjustment: 45
Effective length of query: 30
Effective length of database: 5,022,113
Effective search space: 150663390
Effective search space used: 150663390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)