RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780408|ref|YP_003064821.1| hypothetical protein
CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein
          structure initiative, northeast structural genomics
          consortium, NESG; NMR {Rhodobacter sphaeroides 2}
          Length = 70

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          M + T + +   L   A RAL EA++R+    K   LP EIGGR G +P RFGDWEK GI
Sbjct: 1  MRDMT-EETRKDLPPEALRALAEAEERRRRA-KALDLPKEIGGRNGPEPVRFGDWEKKGI 58

Query: 72 SIDF 75
          +IDF
Sbjct: 59 AIDF 62


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 26.0 bits (56), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 7/26 (26%)

Query: 28  AKRALEEAKQRKSA-------NNKDA 46
           AK+ LEE  QR+S        NN+ A
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIA 141


>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
           sulfate, structural genomics, PSI-2, protein structure
           initiative; 1.90A {Toxoplasma gondii}
          Length = 364

 Score = 24.2 bits (51), Expect = 7.6
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 17  IKTSHDPLSSIAKRALEEAKQRKSANN 43
           ++ S   L  +A R ++ A    S +N
Sbjct: 298 MQRSKGDLEEVAARVMDYAYDMNSQDN 324


>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
          riboflavine biosynthesis, skeletal rearrangement,
          antimicrobial target; 1.40A {Escherichia coli} SCOP:
          d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A
          Length = 217

 Score = 24.1 bits (52), Expect = 8.8
 Identities = 4/28 (14%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRK 39
          M  + + +   P   + + AL   ++ +
Sbjct: 1  MAQTLLSSFGTPFERV-ENALAALREGR 27


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 612,518
Number of extensions: 21522
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 8
Length of query: 75
Length of database: 5,693,230
Length adjustment: 44
Effective length of query: 31
Effective length of database: 4,626,494
Effective search space: 143421314
Effective search space used: 143421314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.7 bits)