RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780408|ref|YP_003064821.1| hypothetical protein
CLIBASIA_01465 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
          {Human (Homo sapiens), AGX1 [TaxId: 9606]}
          Length = 501

 Score = 28.4 bits (63), Expect = 0.19
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 24 LSSIAKRALEEAKQRKSANNKDAK---LPIEIGGRKGLDPTRFGDWEKNGISI 73
          L+   ++A+E   Q     N DA+   +P E+ G    D  +   WE  G+  
Sbjct: 45 LNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSATRDQDQLQAWESEGLFQ 97


>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
          domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 374

 Score = 24.1 bits (51), Expect = 3.8
 Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)

Query: 20 SHDPLSSIAKRALEEAKQR 38
          S DP  +IA++A       
Sbjct: 1  SRDP-RNIARKAENYLIST 18


>d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938
           {Enterococcus faecium [TaxId: 1352]}
          Length = 186

 Score = 22.6 bits (48), Expect = 8.9
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 48  LPIEIGGRKGLDPTRFGDWEK 68
           LP ++   +   P   G +E+
Sbjct: 152 LPDKLKNAQYYQPKDTGKYEQ 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,808
Number of extensions: 9074
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 5
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)