HHsearch alignment for GI: 254780409 and conserved domain: COG2065
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism].
Probab=98.23 E-value=1.5e-05 Score=57.21 Aligned_cols=97 Identities=28% Similarity=0.401 Sum_probs=73.0
Q ss_pred HHHHHHH-HCCCCCEEEEECCCCHHHHHHHHHHHCC------CCEEEEEC--CCCC-------CCCCEEECCCCCCCCCE
Q ss_conf 7787653-0585551885166563578999999709------97999832--6767-------63210000245455742
Q gi|254780409|r 148 LERDIKE-RNDISNLMVVSPDVGGVVRARALAKRLG------CLLAIVDK--RREH-------PGKIEVMNIIGKVEGKD 211 (310)
Q Consensus 148 l~~~l~~-~~~~~~~vVVaPD~G~~~ra~~~a~~L~------~~~~~~~K--~R~~-------~~~v~~~~~~gdV~gr~ 211 (310)
T Consensus 19 ia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~ 98 (179)
T COG2065 19 IAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDITGKR 98 (179)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999997079985599967428789999999999887377887036876785141331576677656764752446878
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf 89952132033668889898752687-5217872
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGA-LSVTAYI 244 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA-~~V~~~~ 244 (310)
T Consensus 99 VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav 132 (179)
T COG2065 99 VILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV 132 (179)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9998201114724999999998649853589999