Query gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 310
No_of_seqs 153 out of 2126
Neff 6.4
Searched_HMMs 39220
Date Sun May 29 18:35:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780409.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00145 phosphoribosylpyropho 100.0 0 0 799.3 29.5 309 1-310 124-440 (443)
2 PRK05259 consensus 100.0 0 0 764.6 30.8 310 1-310 1-310 (310)
3 PRK02812 ribose-phosphate pyro 100.0 0 0 762.5 30.9 308 1-310 22-331 (331)
4 PRK01259 ribose-phosphate pyro 100.0 0 0 761.6 31.5 309 1-310 1-309 (309)
5 PRK00553 ribose-phosphate pyro 100.0 0 0 757.6 30.7 309 1-310 18-330 (340)
6 PRK04554 consensus 100.0 0 0 755.9 30.4 309 1-310 7-316 (327)
7 PRK02039 consensus 100.0 0 0 754.2 31.3 309 1-310 6-315 (316)
8 PRK02270 consensus 100.0 0 0 754.9 30.6 308 1-310 6-315 (327)
9 PRK01506 consensus 100.0 0 0 751.4 31.0 308 1-310 10-317 (317)
10 COG0462 PrsA Phosphoribosylpyr 100.0 0 0 752.5 29.7 309 1-310 5-314 (314)
11 PRK05038 consensus 100.0 0 0 750.1 31.1 309 1-310 4-314 (315)
12 PRK02269 ribose-phosphate pyro 100.0 0 0 746.6 31.7 309 1-310 6-317 (321)
13 PRK04923 ribose-phosphate pyro 100.0 0 0 743.1 31.5 310 1-310 7-318 (319)
14 PRK04117 consensus 100.0 0 0 740.2 31.2 305 1-309 4-308 (309)
15 PRK01999 consensus 100.0 0 0 736.2 30.9 304 1-309 6-309 (311)
16 PRK02458 ribose-phosphate pyro 100.0 0 0 735.1 30.8 307 1-310 10-317 (323)
17 PRK03092 ribose-phosphate pyro 100.0 0 0 717.1 29.2 298 12-310 1-301 (304)
18 PRK07199 phosphoribosylpyropho 100.0 0 0 670.1 29.2 289 2-302 4-296 (301)
19 PRK00934 ribose-phosphate pyro 100.0 0 0 666.2 28.3 286 2-299 1-286 (286)
20 PRK06827 phosphoribosylpyropho 100.0 0 0 666.6 27.5 308 1-310 9-369 (381)
21 PRK01132 consensus 100.0 0 0 651.9 28.4 284 1-299 1-284 (286)
22 PRK03675 consensus 100.0 0 0 640.4 26.4 277 2-294 1-277 (279)
23 KOG1448 consensus 100.0 0 0 640.3 18.4 309 1-310 4-314 (316)
24 KOG1503 consensus 100.0 0 0 484.2 24.0 309 1-310 9-348 (354)
25 TIGR01251 ribP_PPkin ribose-ph 100.0 0 0 479.3 24.4 309 1-310 1-316 (316)
26 pfam00156 Pribosyltran Phospho 99.4 1.2E-11 3.1E-16 97.6 10.7 102 144-246 13-123 (123)
27 COG1926 Predicted phosphoribos 99.3 5.4E-11 1.4E-15 93.3 12.2 130 141-273 7-185 (220)
28 PRK02277 orotate phosphoribosy 99.3 3.5E-11 9E-16 94.5 9.1 101 145-245 72-177 (201)
29 COG0634 Hpt Hypoxanthine-guani 99.2 1.5E-10 3.8E-15 90.3 10.2 101 144-244 20-128 (178)
30 PRK13809 orotate phosphoribosy 99.2 4.9E-10 1.3E-14 86.9 12.2 150 112-264 16-172 (206)
31 PRK09162 hypoxanthine-guanine 99.2 2.6E-10 6.5E-15 88.8 10.1 106 145-253 26-138 (181)
32 PRK13811 orotate phosphoribosy 99.2 6E-10 1.5E-14 86.3 10.9 149 107-263 3-157 (170)
33 COG0856 Orotate phosphoribosyl 99.2 3.3E-10 8.5E-15 88.0 9.5 99 146-244 73-176 (203)
34 PRK13812 orotate phosphoribosy 99.1 1.1E-09 2.7E-14 84.7 11.6 149 108-263 5-160 (174)
35 PRK13810 orotate phosphoribosy 99.1 1E-09 2.6E-14 84.9 10.8 154 108-264 18-176 (187)
36 PRK05500 bifunctional orotidin 99.1 1.2E-08 3.1E-13 77.7 14.5 103 157-264 342-447 (478)
37 COG0461 PyrE Orotate phosphori 99.0 8.4E-09 2.1E-13 78.7 12.1 103 158-265 60-167 (201)
38 PTZ00271 hypoxanthine-guanine 99.0 4E-09 1E-13 80.9 10.1 107 146-255 38-161 (211)
39 PRK07322 adenine phosphoribosy 99.0 4.2E-09 1.1E-13 80.7 10.2 119 136-256 25-165 (178)
40 PRK00455 pyrE orotate phosphor 99.0 4.6E-09 1.2E-13 80.5 9.6 154 105-263 4-165 (200)
41 TIGR01090 apt adenine phosphor 99.0 4.9E-09 1.3E-13 80.3 9.6 120 144-263 34-168 (175)
42 PRK02304 adenine phosphoribosy 99.0 6.8E-09 1.7E-13 79.4 10.2 114 145-258 35-162 (174)
43 PRK12560 adenine phosphoribosy 99.0 1.1E-08 2.8E-13 78.0 10.7 115 147-261 36-164 (184)
44 COG0503 Apt Adenine/guanine ph 98.9 9.7E-09 2.5E-13 78.4 10.0 110 147-259 44-166 (179)
45 TIGR00336 pyrE orotate phospho 98.9 1.8E-08 4.5E-13 76.6 10.7 112 134-247 28-157 (187)
46 PTZ00149 hypoxanthine phosphor 98.9 2E-08 5E-13 76.3 9.6 105 145-252 54-177 (231)
47 TIGR01203 HGPRTase hypoxanthin 98.8 2.5E-08 6.5E-13 75.6 8.9 106 145-253 12-142 (183)
48 COG0034 PurF Glutamine phospho 98.8 5.3E-09 1.4E-13 80.1 4.7 152 147-299 271-438 (470)
49 PRK05205 bifunctional pyrimidi 98.8 9E-08 2.3E-12 71.9 10.2 100 145-244 16-131 (176)
50 PRK11595 gluconate periplasmic 98.8 2.4E-08 6.2E-13 75.7 6.7 76 170-245 134-223 (227)
51 PRK06388 amidophosphoribosyltr 98.7 4.1E-08 1E-12 74.2 7.0 150 147-297 279-444 (474)
52 KOG1712 consensus 98.7 9.6E-08 2.4E-12 71.7 8.4 125 143-267 43-180 (183)
53 TIGR01367 pyrE_Therm orotate p 98.7 1.9E-07 4.9E-12 69.7 9.6 131 109-244 2-146 (205)
54 PRK09246 amidophosphoribosyltr 98.7 4.3E-08 1.1E-12 74.1 6.3 150 147-298 280-447 (503)
55 PRK08341 amidophosphoribosyltr 98.7 4.3E-08 1.1E-12 74.0 5.9 150 147-297 259-422 (442)
56 PRK08558 adenine phosphoribosy 98.7 6.4E-07 1.6E-11 66.3 11.4 116 144-260 95-227 (238)
57 PRK09123 amidophosphoribosyltr 98.6 7.7E-08 2E-12 72.4 6.3 149 147-297 274-439 (480)
58 PRK08525 amidophosphoribosyltr 98.6 4.8E-08 1.2E-12 73.7 5.0 150 147-297 263-428 (445)
59 PRK06781 amidophosphoribosyltr 98.6 1.1E-07 2.8E-12 71.4 6.6 152 147-299 271-438 (471)
60 PRK07631 amidophosphoribosyltr 98.6 7.7E-08 2E-12 72.4 5.4 150 147-297 271-436 (475)
61 PRK09219 xanthine phosphoribos 98.6 1.4E-06 3.6E-11 64.0 11.7 116 145-262 35-170 (189)
62 PRK07349 amidophosphoribosyltr 98.6 1.1E-07 2.8E-12 71.4 5.7 150 147-297 295-460 (495)
63 PRK07272 amidophosphoribosyltr 98.6 8.6E-08 2.2E-12 72.0 4.8 149 147-296 273-437 (484)
64 PRK07847 amidophosphoribosyltr 98.6 1.9E-07 4.8E-12 69.8 6.3 150 147-297 265-430 (489)
65 PRK06031 phosphoribosyltransfe 98.5 1.8E-06 4.7E-11 63.2 9.5 115 145-261 69-205 (233)
66 PRK05793 amidophosphoribosyltr 98.5 2.7E-07 6.8E-12 68.8 5.2 149 147-296 279-443 (472)
67 COG1040 ComFC Predicted amidop 98.4 1.7E-06 4.3E-11 63.5 8.8 124 118-245 65-220 (225)
68 KOG0572 consensus 98.3 1.3E-06 3.2E-11 64.3 6.3 136 160-296 293-444 (474)
69 COG2236 Predicted phosphoribos 98.3 2.9E-06 7.4E-11 61.9 7.8 96 144-240 15-118 (192)
70 PRK00129 upp uracil phosphorib 98.3 1.3E-05 3.4E-10 57.6 10.5 112 159-272 69-184 (208)
71 PRK02269 ribose-phosphate pyro 98.3 2.5E-05 6.5E-10 55.7 11.9 141 158-300 3-161 (321)
72 COG2065 PyrR Pyrimidine operon 98.2 1.5E-05 3.8E-10 57.2 9.6 97 148-244 19-132 (179)
73 TIGR01091 upp uracil phosphori 98.2 1.2E-05 3E-10 57.8 9.0 111 157-269 70-187 (213)
74 PRK01259 ribose-phosphate pyro 98.2 7E-05 1.8E-09 52.8 12.7 134 167-301 6-157 (309)
75 PRK01999 consensus 98.2 4.8E-05 1.2E-09 53.8 11.8 135 166-301 10-161 (311)
76 KOG3367 consensus 98.2 7.3E-06 1.9E-10 59.3 7.6 105 145-252 46-165 (216)
77 PRK04117 consensus 98.2 9.5E-05 2.4E-09 51.9 12.8 132 168-300 10-159 (309)
78 PRK02270 consensus 98.2 0.00013 3.3E-09 51.0 13.1 141 158-300 3-161 (327)
79 PRK02458 ribose-phosphate pyro 98.1 0.00011 2.7E-09 51.5 12.7 143 156-300 5-165 (323)
80 PRK04923 ribose-phosphate pyro 98.1 0.00011 2.9E-09 51.3 12.5 141 159-301 5-164 (319)
81 PRK00934 ribose-phosphate pyro 98.1 9.5E-05 2.4E-09 51.9 11.5 133 166-299 4-152 (286)
82 PRK01506 consensus 98.1 0.00015 3.9E-09 50.5 12.5 140 159-300 8-165 (317)
83 PRK04554 consensus 98.1 0.00013 3.3E-09 50.9 12.0 141 158-300 4-163 (327)
84 PRK02812 ribose-phosphate pyro 98.1 0.00015 3.9E-09 50.5 12.2 141 157-299 18-176 (331)
85 PRK03092 ribose-phosphate pyro 98.0 7.2E-05 1.8E-09 52.7 10.1 131 7-157 157-292 (304)
86 TIGR00201 comF comF family pro 98.0 2.6E-06 6.6E-11 62.3 2.6 42 203-244 162-204 (207)
87 PRK02039 consensus 98.0 0.00019 5E-09 49.8 12.1 140 159-300 4-162 (316)
88 PRK05259 consensus 98.0 9.5E-05 2.4E-09 51.9 10.5 129 8-155 169-299 (310)
89 PRK07199 phosphoribosylpyropho 98.0 0.00022 5.6E-09 49.4 12.2 137 161-299 3-158 (301)
90 TIGR01134 purF amidophosphorib 98.0 1.4E-05 3.7E-10 57.3 6.1 142 143-297 274-448 (467)
91 PRK05038 consensus 98.0 0.00025 6.3E-09 49.1 12.1 133 167-300 9-160 (315)
92 PRK00553 ribose-phosphate pyro 98.0 0.00029 7.5E-09 48.6 12.1 140 159-300 16-173 (340)
93 COG0462 PrsA Phosphoribosylpyr 97.9 0.00041 1.1E-08 47.6 11.1 138 161-300 5-160 (314)
94 COG0035 Upp Uracil phosphoribo 97.8 0.00019 4.7E-09 49.9 8.8 112 159-272 70-186 (210)
95 PRK09177 xanthine-guanine phos 97.8 9.3E-05 2.4E-09 51.9 7.2 87 145-234 19-109 (156)
96 PRK01132 consensus 97.8 0.00067 1.7E-08 46.2 11.6 131 168-300 7-153 (286)
97 PRK09213 purine operon repress 97.6 0.0015 3.8E-08 43.9 10.4 118 146-271 120-255 (274)
98 PTZ00145 phosphoribosylpyropho 97.5 0.0019 4.9E-08 43.2 10.4 201 79-300 61-281 (443)
99 TIGR01743 purR_Bsub pur operon 97.4 0.0015 3.8E-08 43.9 8.4 121 143-271 115-254 (269)
100 PRK06827 phosphoribosylpyropho 96.6 0.07 1.8E-06 32.9 12.5 132 6-155 216-358 (381)
101 TIGR01744 XPRTase xanthine pho 96.0 0.087 2.2E-06 32.2 8.9 116 145-262 35-170 (191)
102 KOG1017 consensus 94.2 0.15 3.8E-06 30.7 5.8 74 201-275 181-256 (267)
103 PRK11595 gluconate periplasmic 90.3 0.7 1.8E-05 26.2 5.1 30 118-154 113-143 (227)
104 PRK02277 orotate phosphoribosy 88.9 1.1 2.7E-05 25.1 5.1 72 8-83 97-173 (201)
105 TIGR03499 FlhF flagellar biosy 88.7 0.84 2.1E-05 25.7 4.5 64 148-217 214-280 (282)
106 PRK10200 putative racemase; Pr 88.7 2.1 5.3E-05 23.1 8.7 188 49-249 3-203 (230)
107 PRK06781 amidophosphoribosyltr 88.5 0.83 2.1E-05 25.7 4.4 61 205-274 312-388 (471)
108 cd03115 SRP The signal recogni 88.5 2.2 5.5E-05 23.0 8.4 121 146-269 18-148 (173)
109 COG2179 Predicted hydrolase of 87.4 2.5 6.3E-05 22.6 7.3 111 110-229 20-151 (175)
110 PRK08525 amidophosphoribosyltr 87.1 0.77 2E-05 26.0 3.5 53 222-274 312-380 (445)
111 COG0034 PurF Glutamine phospho 87.0 0.91 2.3E-05 25.5 3.9 52 222-273 320-387 (470)
112 TIGR01139 cysK cysteine syntha 85.5 1.6 4.1E-05 23.9 4.4 174 48-258 23-221 (312)
113 PRK07631 amidophosphoribosyltr 84.4 0.95 2.4E-05 25.4 2.9 61 205-274 312-388 (475)
114 pfam01380 SIS SIS domain. SIS 83.4 2.1 5.2E-05 23.1 4.3 75 3-82 10-84 (131)
115 PRK07349 amidophosphoribosyltr 83.3 1.1 2.7E-05 25.0 2.8 61 205-274 336-412 (495)
116 PRK05627 bifunctional riboflav 83.2 3.9 9.9E-05 21.3 6.8 109 74-194 38-155 (303)
117 pfam08468 MTS_N Methyltransfer 83.0 4 0.0001 21.2 5.7 120 37-183 3-123 (155)
118 PRK05703 flhF flagellar biosyn 82.9 4 0.0001 21.2 9.6 116 148-269 230-354 (412)
119 COG1922 WecG Teichoic acid bio 82.6 4.1 0.0001 21.1 10.2 68 206-276 105-176 (253)
120 cd06268 PBP1_ABC_transporter_L 82.2 4.2 0.00011 21.0 8.3 130 133-269 110-245 (298)
121 PRK12727 flagellar biosynthesi 81.7 4.5 0.00011 20.9 6.9 108 156-269 376-491 (557)
122 cd06343 PBP1_ABC_ligand_bindin 81.3 4.6 0.00012 20.8 8.7 123 144-271 130-258 (362)
123 TIGR01136 cysKM cysteine synth 80.6 2.5 6.3E-05 22.6 3.8 187 22-252 8-215 (315)
124 COG4821 Uncharacterized protei 79.9 5.1 0.00013 20.5 6.3 153 2-172 42-226 (243)
125 cd06335 PBP1_ABC_ligand_bindin 79.2 5.3 0.00014 20.4 8.3 125 135-266 115-245 (347)
126 cd06303 PBP1_LuxPQ_Quorum_Sens 78.9 5.5 0.00014 20.3 14.6 174 106-304 74-265 (280)
127 PRK11916 electron transfer fla 77.5 6 0.00015 20.0 7.3 102 48-185 5-106 (312)
128 PRK05723 flavodoxin; Provision 77.2 4.7 0.00012 20.8 4.4 113 3-123 5-122 (151)
129 pfam00448 SRP54 SRP54-type pro 77.2 6.1 0.00016 20.0 8.8 121 146-269 19-149 (196)
130 cd01985 ETF The electron trans 77.1 6.1 0.00016 20.0 5.0 102 59-187 19-120 (181)
131 TIGR01279 DPOR_bchN light-inde 76.9 0.71 1.8E-05 26.2 0.1 70 45-124 185-262 (458)
132 PRK10867 signal recognition pa 76.1 2.5 6.5E-05 22.5 2.8 40 146-186 118-160 (453)
133 pfam06300 Tsp45I Tsp45I type I 74.3 0.71 1.8E-05 26.2 -0.4 141 85-249 69-227 (261)
134 TIGR01137 cysta_beta cystathio 73.3 2.2 5.7E-05 22.9 1.9 67 204-273 168-246 (527)
135 COG2185 Sbm Methylmalonyl-CoA 72.8 7.9 0.0002 19.3 4.9 45 225-270 80-124 (143)
136 CHL00194 ycf39 Ycf39; Provisio 71.8 8.3 0.00021 19.1 7.4 116 1-123 1-142 (319)
137 TIGR02320 PEP_mutase phosphoen 71.7 5.8 0.00015 20.1 3.7 173 58-248 48-234 (272)
138 KOG2091 consensus 71.2 8.5 0.00022 19.0 6.2 53 107-166 174-229 (392)
139 cd02071 MM_CoA_mut_B12_BD meth 69.9 9.1 0.00023 18.8 5.3 63 208-271 49-112 (122)
140 pfam08981 consensus 68.3 9.7 0.00025 18.6 4.3 17 166-182 101-117 (181)
141 cd06358 PBP1_NHase Type I peri 66.5 11 0.00027 18.4 9.2 119 146-270 120-244 (333)
142 cd05710 SIS_1 A subgroup of th 66.4 11 0.00027 18.4 6.1 77 3-83 3-79 (120)
143 PRK02122 glucosamine-6-phospha 66.3 11 0.00027 18.4 4.4 47 208-258 376-430 (660)
144 cd01444 GlpE_ST GlpE sulfurtra 66.0 7.6 0.00019 19.3 3.4 32 208-242 55-86 (96)
145 cd06327 PBP1_SBP_like_1 Peripl 65.7 11 0.00028 18.3 9.0 131 134-271 112-248 (334)
146 pfam01488 Shikimate_DH Shikima 65.6 11 0.00028 18.3 4.2 35 205-243 8-42 (134)
147 PRK00230 orotidine 5'-phosphat 64.7 11 0.00029 18.2 4.4 14 10-23 14-27 (231)
148 cd06380 PBP1_iGluR_AMPA N-term 64.5 12 0.0003 18.1 9.4 201 98-303 67-298 (382)
149 cd01528 RHOD_2 Member of the R 63.6 11 0.00028 18.3 3.8 33 208-243 57-89 (101)
150 PRK06995 flhF flagellar biosyn 63.3 12 0.00031 18.0 4.4 284 1-300 3-371 (404)
151 PRK11930 putative bifunctional 63.1 12 0.00031 18.0 13.8 231 13-269 297-541 (824)
152 PRK02472 murD UDP-N-acetylmura 63.1 12 0.00031 18.0 8.7 204 47-268 72-377 (450)
153 cd01974 Nitrogenase_MoFe_beta 62.9 10 0.00027 18.4 3.6 137 106-248 176-338 (435)
154 pfam06574 FAD_syn FAD syntheta 62.8 12 0.00032 17.9 6.6 100 83-194 40-150 (158)
155 PRK04338 N(2),N(2)-dimethylgua 62.8 12 0.00032 17.9 6.4 11 172-182 227-237 (376)
156 COG0541 Ffh Signal recognition 62.0 9.6 0.00025 18.7 3.3 42 145-188 117-161 (451)
157 cd06349 PBP1_ABC_ligand_bindin 61.5 13 0.00033 17.8 9.7 130 134-270 111-246 (340)
158 PRK05579 bifunctional phosphop 61.5 13 0.00033 17.8 6.5 14 251-264 332-345 (392)
159 PRK12723 flagellar biosynthesi 60.9 13 0.00034 17.7 8.7 117 147-269 193-321 (388)
160 COG2100 Predicted Fe-S oxidore 60.7 13 0.00034 17.7 6.3 47 225-271 177-225 (414)
161 cd01965 Nitrogenase_MoFe_beta_ 60.5 14 0.00035 17.7 4.2 134 105-247 170-333 (428)
162 TIGR00514 accC acetyl-CoA carb 60.5 14 0.00035 17.7 3.8 53 68-126 15-80 (451)
163 PRK13982 bifunctional SbtC-lik 60.2 14 0.00035 17.7 6.0 39 42-85 66-104 (476)
164 TIGR02639 ClpA ATP-dependent C 58.1 8 0.0002 19.2 2.3 25 161-185 530-555 (774)
165 cd00316 Oxidoreductase_nitroge 58.0 15 0.00038 17.4 5.4 133 105-245 167-311 (399)
166 PRK05301 pyrroloquinoline quin 57.9 15 0.00038 17.4 7.9 121 64-185 49-186 (375)
167 PRK02947 hypothetical protein; 57.8 15 0.00039 17.4 7.0 160 3-181 46-239 (247)
168 cd02115 AAK Amino Acid Kinases 57.1 15 0.00039 17.3 7.7 126 46-187 28-169 (248)
169 cd03147 GATase1_Ydr533c_like T 56.8 15 0.00037 17.5 3.5 28 59-87 19-46 (231)
170 TIGR01317 GOGAT_sm_gam glutama 56.2 16 0.00041 17.2 5.7 190 30-250 134-345 (517)
171 cd06346 PBP1_ABC_ligand_bindin 55.0 17 0.00043 17.1 9.0 128 134-269 114-248 (312)
172 pfam02633 Creatininase Creatin 55.0 17 0.00043 17.1 6.3 97 45-155 13-126 (235)
173 PRK00045 hemA glutamyl-tRNA re 54.5 16 0.00042 17.2 3.4 38 203-244 176-213 (429)
174 PRK05201 hslU ATP-dependent pr 52.9 13 0.00034 17.8 2.7 30 5-34 59-88 (442)
175 cd01065 NAD_bind_Shikimate_DH 52.6 18 0.00047 16.8 4.1 36 206-245 16-51 (155)
176 PRK09814 hypothetical protein; 52.5 18 0.00047 16.8 3.7 165 6-188 17-196 (337)
177 TIGR03407 urea_ABC_UrtA urea A 52.5 18 0.00047 16.8 7.7 125 137-268 114-245 (359)
178 TIGR00381 cdhD CO dehydrogenas 52.5 18 0.00047 16.8 3.4 46 140-192 121-167 (401)
179 PRK06740 histidinol-phosphatas 52.3 18 0.00047 16.8 6.2 154 21-193 139-326 (338)
180 pfam01012 ETF Electron transfe 52.1 19 0.00047 16.8 8.0 103 59-185 12-114 (161)
181 cd06332 PBP1_aromatic_compound 51.8 19 0.00048 16.8 9.6 129 133-268 110-242 (333)
182 PRK06731 flhF flagellar biosyn 51.7 19 0.00048 16.7 8.1 39 147-187 94-135 (270)
183 pfam01177 Asp_Glu_race Asp/Glu 51.7 19 0.00048 16.7 10.7 136 108-260 55-195 (212)
184 TIGR00382 clpX ATP-dependent C 51.2 19 0.00049 16.7 3.4 146 42-193 30-188 (452)
185 cd01447 Polysulfide_ST Polysul 51.1 18 0.00045 17.0 3.1 33 208-243 60-92 (103)
186 COG2263 Predicted RNA methylas 50.8 8.7 0.00022 19.0 1.5 26 159-184 69-94 (198)
187 cd04725 OMP_decarboxylase_like 50.6 20 0.0005 16.6 4.7 15 9-23 9-23 (216)
188 KOG0814 consensus 49.9 15 0.00039 17.3 2.7 24 106-129 44-67 (237)
189 cd01525 RHOD_Kc Member of the 49.8 20 0.00051 16.6 3.4 34 207-243 63-96 (105)
190 pfam01972 SDH_sah Serine dehyd 49.8 20 0.00051 16.5 5.1 74 107-182 39-116 (286)
191 pfam04989 CmcI Cephalosporin h 49.1 21 0.00053 16.5 4.6 24 105-128 46-70 (202)
192 TIGR00070 hisG ATP phosphoribo 48.9 21 0.00053 16.5 3.9 45 196-250 165-211 (317)
193 TIGR00078 nadC nicotinate-nucl 48.1 21 0.00054 16.4 6.8 62 208-274 205-266 (276)
194 PRK00856 pyrB aspartate carbam 48.0 21 0.00055 16.4 10.9 161 44-218 41-222 (304)
195 PRK08305 spoVFB dipicolinate s 48.0 21 0.00055 16.4 6.4 45 44-95 2-46 (195)
196 cd01715 ETF_alpha The electron 47.6 22 0.00055 16.3 5.4 104 56-187 9-112 (168)
197 TIGR01318 gltD_gamma_fam gluta 47.5 20 0.00052 16.5 3.0 36 205-244 288-323 (480)
198 KOG1481 consensus 46.9 20 0.00051 16.6 2.9 29 219-247 221-249 (391)
199 PRK09841 cryptic autophosphory 46.5 23 0.00058 16.2 8.0 141 100-244 543-700 (726)
200 PRK03881 hypothetical protein; 46.5 23 0.00058 16.2 3.6 111 5-128 86-226 (467)
201 PRK12769 putative oxidoreducta 46.5 23 0.00058 16.2 3.3 39 206-248 465-503 (654)
202 cd02072 Glm_B12_BD B12 binding 46.3 23 0.00058 16.2 6.0 63 209-271 50-118 (128)
203 COG2120 Uncharacterized protei 45.9 19 0.00048 16.7 2.6 17 111-127 70-86 (237)
204 pfam12303 SNDH Membrane bound 45.6 9.6 0.00024 18.7 1.1 59 27-85 53-117 (140)
205 COG0036 Rpe Pentose-5-phosphat 45.4 23 0.0006 16.1 4.8 129 71-253 77-205 (220)
206 cd06811 PLPDE_III_yhfX_like Ty 44.3 24 0.00062 16.0 11.8 181 99-288 63-280 (382)
207 cd05013 SIS_RpiR RpiR-like pro 44.2 24 0.00062 16.0 5.1 35 206-240 57-91 (139)
208 smart00851 MGS MGS-like domain 44.1 20 0.0005 16.6 2.5 45 218-269 16-63 (90)
209 COG1184 GCD2 Translation initi 44.0 25 0.00063 16.0 5.2 75 165-245 154-229 (301)
210 TIGR00959 ffh signal recogniti 44.0 22 0.00056 16.3 2.7 41 146-187 120-164 (439)
211 PRK08841 aspartate kinase; Val 43.4 18 0.00046 16.9 2.2 61 46-121 32-93 (392)
212 PRK00164 moaA molybdenum cofac 43.4 25 0.00064 15.9 4.1 122 64-189 53-196 (334)
213 cd01526 RHOD_ThiF Member of th 43.3 25 0.00064 15.9 3.2 31 208-241 71-102 (122)
214 PRK00162 glpE thiosulfate sulf 42.7 23 0.00058 16.2 2.7 24 103-129 6-29 (104)
215 PRK11557 putative DNA-binding 42.6 26 0.00066 15.8 3.0 81 157-246 131-214 (282)
216 cd06330 PBP1_Arsenic_SBP_like 42.5 26 0.00066 15.8 8.7 131 134-269 113-251 (346)
217 TIGR00259 TIGR00259 conserved 42.3 15 0.00039 17.3 1.7 153 109-275 35-238 (261)
218 PRK08508 biotin synthase; Prov 42.3 26 0.00067 15.8 5.0 183 66-272 44-254 (279)
219 cd07040 HP Histidine phosphata 42.0 26 0.00067 15.8 6.4 89 145-263 34-124 (153)
220 PRK11761 cysM cysteine synthas 42.0 26 0.00067 15.8 5.0 122 100-244 72-201 (296)
221 cd01522 RHOD_1 Member of the R 41.2 27 0.00069 15.7 3.5 34 208-244 63-96 (117)
222 cd01977 Nitrogenase_VFe_alpha 41.0 27 0.0007 15.7 8.2 154 106-270 177-345 (415)
223 PRK10287 thiosulfate:cyanide s 41.0 27 0.0007 15.7 4.1 35 237-271 60-94 (104)
224 cd04509 PBP1_ABC_transporter_G 40.8 28 0.0007 15.7 10.3 129 133-268 112-247 (299)
225 PRK00257 erythronate-4-phospha 40.5 28 0.00071 15.6 4.0 169 1-182 1-222 (379)
226 TIGR02668 moaA_archaeal probab 40.4 28 0.00071 15.6 3.7 82 105-189 102-195 (324)
227 COG0426 FpaA Uncharacterized f 40.3 26 0.00067 15.8 2.7 103 162-272 194-309 (388)
228 cd05213 NAD_bind_Glutamyl_tRNA 40.2 28 0.00072 15.6 4.2 38 203-244 172-209 (311)
229 PRK11070 ssDNA exonuclease Rec 39.6 29 0.00073 15.5 6.6 86 32-129 51-138 (574)
230 smart00849 Lactamase_B Metallo 39.4 29 0.00074 15.5 6.0 15 117-131 41-55 (183)
231 COG1236 YSH1 Predicted exonucl 39.2 29 0.00074 15.5 4.2 45 47-94 179-229 (427)
232 TIGR01809 Shik-DH-AROM shikima 39.1 29 0.00075 15.5 3.7 50 218-271 135-184 (291)
233 cd06334 PBP1_ABC_ligand_bindin 38.7 30 0.00076 15.4 10.3 160 135-301 113-305 (351)
234 COG0287 TyrA Prephenate dehydr 38.7 30 0.00076 15.4 3.0 37 206-242 133-169 (279)
235 TIGR03343 biphenyl_bphD 2-hydr 38.4 30 0.00076 15.4 5.6 88 37-128 20-109 (282)
236 cd01966 Nitrogenase_NifN_1 Nit 38.3 30 0.00077 15.4 5.8 37 207-247 298-334 (417)
237 COG0770 MurF UDP-N-acetylmuram 38.1 30 0.00077 15.4 6.9 95 209-304 325-429 (451)
238 PRK13940 glutamyl-tRNA reducta 37.9 30 0.00078 15.4 4.0 38 203-244 175-212 (414)
239 pfam00721 TMV_coat Virus coat 37.8 31 0.00078 15.3 3.3 59 7-79 38-96 (146)
240 COG1737 RpiR Transcriptional r 37.6 31 0.00079 15.3 3.4 86 157-251 129-217 (281)
241 cd07363 45_DOPA_Dioxygenase Th 37.5 11 0.00028 18.3 0.3 22 161-182 70-91 (253)
242 cd01527 RHOD_YgaP Member of th 37.4 31 0.00079 15.3 3.7 32 208-242 53-84 (99)
243 COG0502 BioB Biotin synthase a 37.4 31 0.00079 15.3 2.9 46 45-90 61-112 (335)
244 TIGR03446 mycothiol_Mca mycoth 37.4 28 0.00071 15.6 2.4 76 66-152 62-150 (283)
245 cd06326 PBP1_STKc_like Type I 37.0 31 0.0008 15.3 10.8 148 145-300 124-297 (336)
246 cd07067 HP_PGM_like Histidine 36.7 32 0.00081 15.2 6.6 103 132-263 19-124 (153)
247 PRK11889 flhF flagellar biosyn 36.7 32 0.00081 15.2 7.0 118 147-269 260-386 (436)
248 cd06342 PBP1_ABC_LIVBP_like Ty 36.5 32 0.00082 15.2 9.6 130 133-270 110-246 (334)
249 PRK02006 murD UDP-N-acetylmura 36.0 33 0.00083 15.2 7.7 121 45-168 67-237 (501)
250 PRK06256 biotin synthase; Vali 35.9 33 0.00083 15.2 5.2 111 66-180 94-224 (325)
251 pfam08665 PglZ PglZ domain. Th 35.8 33 0.00084 15.1 3.1 27 223-249 144-170 (176)
252 TIGR02482 PFKA_ATP 6-phosphofr 35.7 9.1 0.00023 18.8 -0.3 185 101-304 47-282 (302)
253 cd04726 KGPDC_HPS 3-Keto-L-gul 35.6 33 0.00084 15.1 4.0 31 242-273 161-191 (202)
254 PRK05342 clpX ATP-dependent pr 35.3 33 0.00085 15.1 3.0 36 158-193 109-145 (411)
255 cd03148 GATase1_EcHsp31_like T 35.2 34 0.00086 15.1 2.6 30 60-90 21-50 (232)
256 KOG2672 consensus 35.1 34 0.00086 15.1 3.0 140 26-184 62-216 (360)
257 TIGR03445 mycothiol_MshB 1D-my 35.1 32 0.00082 15.2 2.4 75 69-153 64-153 (284)
258 cd04795 SIS SIS domain. SIS (S 35.0 34 0.00086 15.1 5.4 77 2-83 2-79 (87)
259 TIGR00734 hisAF_rel hisA/hisF 34.9 29 0.00074 15.5 2.2 60 211-272 164-226 (230)
260 cd06329 PBP1_SBP_like_3 Peripl 34.8 34 0.00087 15.0 9.1 120 144-268 129-255 (342)
261 pfam02283 CobU Cobinamide kina 34.7 34 0.00087 15.0 2.7 12 207-218 70-81 (166)
262 PRK06196 oxidoreductase; Provi 34.6 34 0.00087 15.0 4.3 14 286-299 293-306 (316)
263 PRK12810 gltD glutamate syntha 34.6 34 0.00088 15.0 2.9 34 206-243 278-311 (472)
264 cd06307 PBP1_uncharacterized_s 34.5 34 0.00088 15.0 7.1 47 220-268 192-239 (275)
265 PRK12771 putative glutamate sy 34.0 35 0.0009 14.9 3.9 12 45-56 135-146 (560)
266 PRK06197 short chain dehydroge 33.9 35 0.0009 14.9 4.7 19 2-21 19-37 (306)
267 PRK07428 nicotinate-nucleotide 33.7 35 0.0009 14.9 6.3 58 208-269 212-269 (285)
268 TIGR02313 HpaI-NOT-DapA 2,4-di 33.5 24 0.00061 16.1 1.5 50 43-96 64-113 (294)
269 COG1402 Uncharacterized protei 33.5 36 0.00091 14.9 4.2 67 61-129 40-115 (250)
270 KOG1377 consensus 33.4 36 0.00091 14.9 3.0 103 163-273 100-211 (261)
271 PRK07431 aspartate kinase; Pro 33.3 36 0.00092 14.9 4.7 62 47-122 33-94 (594)
272 cd06368 PBP1_iGluR_non_NMDA_li 33.2 36 0.00092 14.9 8.0 100 147-248 117-219 (324)
273 cd02133 PA_C5a_like PA_C5a_lik 33.2 36 0.00092 14.9 3.4 35 206-244 45-79 (143)
274 PRK12342 putative electron tra 32.8 37 0.00093 14.8 10.1 131 27-187 5-141 (254)
275 PRK02261 methylaspartate mutas 32.3 37 0.00095 14.8 6.2 62 209-271 54-122 (137)
276 PRK11337 DNA-binding transcrip 32.2 37 0.00096 14.8 3.1 106 148-271 134-242 (293)
277 cd04234 AAK_AK AAK_AK: Amino A 31.9 38 0.00097 14.7 2.4 174 47-274 30-220 (227)
278 PRK10628 hypothetical protein; 31.7 17 0.00042 17.1 0.5 20 98-117 65-84 (246)
279 pfam01634 HisG ATP phosphoribo 31.1 39 0.001 14.6 4.3 51 174-240 76-126 (161)
280 TIGR01330 bisphos_HAL2 3'(2'), 31.1 25 0.00063 15.9 1.3 36 100-136 117-157 (382)
281 cd03522 MoeA_like MoeA_like. T 31.0 38 0.00097 14.7 2.3 45 79-127 5-49 (312)
282 cd06333 PBP1_ABC-type_HAAT_lik 31.0 39 0.001 14.6 6.3 117 134-257 110-232 (312)
283 PRK13124 consensus 30.9 39 0.001 14.6 5.2 155 66-271 72-226 (257)
284 TIGR00064 ftsY signal recognit 30.9 39 0.001 14.6 3.2 83 144-233 98-185 (284)
285 COG1189 Predicted rRNA methyla 30.6 40 0.001 14.6 2.4 46 89-135 74-119 (245)
286 PRK05928 hemD uroporphyrinogen 30.6 40 0.001 14.6 8.2 91 206-300 123-227 (252)
287 PRK09426 methylmalonyl-CoA mut 30.5 40 0.001 14.6 9.0 63 208-271 632-695 (715)
288 cd01518 RHOD_YceA Member of th 30.5 40 0.001 14.6 5.8 29 238-266 62-90 (101)
289 PRK13585 1-(5-phosphoribosyl)- 30.3 40 0.001 14.6 9.7 61 209-272 161-225 (240)
290 PRK00748 1-(5-phosphoribosyl)- 30.3 40 0.001 14.6 11.0 25 101-128 29-53 (241)
291 cd00544 CobU Adenosylcobinamid 30.2 34 0.00087 15.0 1.9 10 160-169 118-127 (169)
292 TIGR01530 nadN NAD nucleotidas 30.2 40 0.001 14.5 3.6 149 99-273 55-218 (550)
293 COG0196 RibF FAD synthase [Coe 30.0 41 0.001 14.5 8.3 139 41-195 10-158 (304)
294 PRK08105 flavodoxin; Provision 30.0 41 0.001 14.5 4.1 131 2-154 5-143 (149)
295 PRK13361 molybdenum cofactor b 29.8 41 0.001 14.5 4.8 123 64-189 47-190 (329)
296 PRK13115 consensus 29.4 42 0.0011 14.5 4.8 222 24-298 26-266 (269)
297 smart00450 RHOD Rhodanese Homo 29.3 42 0.0011 14.4 3.6 33 207-242 54-86 (100)
298 PRK08762 molybdopterin biosynt 29.0 42 0.0011 14.4 3.6 22 106-127 150-171 (379)
299 COG0552 FtsY Signal recognitio 28.9 43 0.0011 14.4 3.2 151 144-307 155-325 (340)
300 COG0529 CysC Adenylylsulfate k 28.8 19 0.00049 16.7 0.4 37 84-123 65-101 (197)
301 PRK05568 flavodoxin; Provision 28.5 43 0.0011 14.4 3.7 95 8-119 14-112 (142)
302 PRK08507 prephenate dehydrogen 28.4 43 0.0011 14.3 6.7 74 162-241 85-165 (275)
303 pfam02602 HEM4 Uroporphyrinoge 28.3 43 0.0011 14.3 8.2 91 206-300 111-212 (229)
304 TIGR00390 hslU heat shock prot 28.3 43 0.0011 14.3 3.1 43 6-59 57-99 (463)
305 cd00952 CHBPH_aldolase Trans-o 28.1 44 0.0011 14.3 2.2 45 43-91 72-116 (309)
306 COG0031 CysK Cysteine synthase 28.1 44 0.0011 14.3 5.3 159 59-252 40-213 (300)
307 COG0486 ThdF Predicted GTPase 28.1 44 0.0011 14.3 5.6 71 4-79 24-104 (454)
308 PRK13306 ulaD 3-keto-L-gulonat 28.0 44 0.0011 14.3 4.0 97 170-299 118-214 (216)
309 TIGR00406 prmA ribosomal prote 28.0 44 0.0011 14.3 3.5 90 206-301 192-284 (330)
310 cd06366 PBP1_GABAb_receptor Li 27.9 44 0.0011 14.3 7.2 136 103-243 76-226 (350)
311 cd01524 RHOD_Pyr_redox Member 27.8 44 0.0011 14.3 3.5 26 209-237 51-76 (90)
312 PRK06444 prephenate dehydrogen 27.6 38 0.00097 14.7 1.8 11 11-21 11-21 (197)
313 PRK04182 cytidylate kinase; Pr 27.4 45 0.0011 14.2 2.1 22 5-26 9-30 (178)
314 PRK10416 cell division protein 27.1 46 0.0012 14.2 7.7 150 145-308 312-482 (499)
315 cd06557 KPHMT-like Ketopantoat 26.9 46 0.0012 14.2 7.1 50 66-122 59-109 (254)
316 PRK05800 cobU adenosylcobinami 26.6 46 0.0012 14.1 2.3 23 160-182 118-145 (170)
317 cd01529 4RHOD_Repeats Member o 26.6 47 0.0012 14.1 3.5 33 208-243 55-87 (96)
318 TIGR02173 cyt_kin_arch cytidyl 26.5 47 0.0012 14.1 2.0 20 5-24 9-28 (173)
319 PRK13131 consensus 26.4 47 0.0012 14.1 12.3 160 64-271 71-230 (257)
320 COG1419 FlhF Flagellar GTP-bin 26.3 47 0.0012 14.1 3.9 36 1-36 3-38 (407)
321 TIGR02902 spore_lonB ATP-depen 26.2 30 0.00076 15.4 1.0 25 217-242 477-501 (532)
322 pfam12224 Amidoligase_2 Putati 26.1 47 0.0012 14.1 8.4 79 4-83 11-106 (250)
323 COG1102 Cmk Cytidylate kinase 26.1 48 0.0012 14.1 2.3 21 5-25 9-29 (179)
324 TIGR02853 spore_dpaA dipicolin 25.8 48 0.0012 14.0 2.3 193 66-289 12-241 (288)
325 PRK09489 rsmC 16S ribosomal RN 25.5 49 0.0012 14.0 3.2 119 38-182 11-129 (342)
326 COG3473 Maleate cis-trans isom 25.5 29 0.00073 15.5 0.8 48 222-270 165-212 (238)
327 COG2513 PrpB PEP phosphonomuta 25.4 49 0.0012 14.0 4.8 47 210-259 149-199 (289)
328 pfam06506 PrpR_N Propionate ca 24.9 50 0.0013 13.9 8.0 81 107-188 22-104 (169)
329 cd06344 PBP1_ABC_ligand_bindin 24.9 50 0.0013 13.9 8.9 164 132-301 108-293 (332)
330 TIGR01748 rhaA L-rhamnose isom 24.8 43 0.0011 14.3 1.6 104 11-128 160-302 (415)
331 PRK11749 putative oxidoreducta 24.8 50 0.0013 13.9 3.8 37 207-247 274-310 (460)
332 PRK12778 putative bifunctional 24.7 50 0.0013 13.9 3.8 60 207-270 576-639 (760)
333 PRK03692 putative UDP-N-acetyl 24.6 51 0.0013 13.9 9.5 138 135-276 13-175 (246)
334 PRK02842 light-independent pro 24.5 32 0.00081 15.2 0.9 20 285-304 396-415 (425)
335 TIGR00087 surE 5'/3'-nucleotid 24.3 51 0.0013 13.9 2.7 18 221-239 153-171 (326)
336 PRK11439 pphA serine/threonine 24.2 51 0.0013 13.8 3.1 78 37-136 7-89 (218)
337 TIGR00016 ackA acetate kinase; 24.2 43 0.0011 14.3 1.5 25 101-125 138-162 (416)
338 cd02064 Flavokinase_C Riboflav 24.1 52 0.0013 13.8 7.1 86 103-199 54-146 (179)
339 PRK13137 consensus 24.0 52 0.0013 13.8 5.4 129 104-271 115-243 (266)
340 TIGR00021 rpiA ribose 5-phosph 24.0 52 0.0013 13.8 3.6 18 172-189 54-71 (236)
341 COG1099 Predicted metal-depend 23.9 52 0.0013 13.8 4.6 89 114-214 60-162 (254)
342 PRK00258 aroE shikimate 5-dehy 23.9 52 0.0013 13.8 4.0 35 206-244 119-153 (275)
343 cd04737 LOX_like_FMN L-Lactate 23.9 52 0.0013 13.8 7.7 165 56-243 131-305 (351)
344 PRK11302 DNA-binding transcrip 23.8 52 0.0013 13.8 3.6 80 157-244 127-209 (284)
345 TIGR00670 asp_carb_tr aspartat 23.7 52 0.0013 13.8 9.3 123 148-272 90-236 (336)
346 cd07371 2A5CPDO_AB The alpha a 23.6 53 0.0013 13.8 10.1 137 105-251 27-181 (268)
347 PRK11320 prpB 2-methylisocitra 23.5 53 0.0013 13.8 4.9 147 100-257 89-248 (292)
348 cd01773 Faf1_like1_UBX Faf1_li 23.5 46 0.0012 14.2 1.5 34 23-73 4-37 (82)
349 PRK04308 murD UDP-N-acetylmura 23.5 53 0.0014 13.8 8.7 115 46-168 66-223 (445)
350 PRK05290 hydroxylamine reducta 23.4 53 0.0014 13.7 4.2 45 196-247 218-263 (540)
351 PRK12726 flagellar biosynthesi 23.3 54 0.0014 13.7 8.8 35 1-35 9-43 (407)
352 PRK13358 protocatechuate 4,5-d 23.2 54 0.0014 13.7 2.3 25 109-135 34-58 (269)
353 TIGR00222 panB 3-methyl-2-oxob 23.0 46 0.0012 14.2 1.5 203 3-232 19-250 (267)
354 COG0169 AroE Shikimate 5-dehyd 22.9 54 0.0014 13.7 4.3 36 206-245 123-158 (283)
355 TIGR00420 trmU tRNA (5-methyla 22.8 40 0.001 14.6 1.2 26 6-31 56-83 (394)
356 COG1710 Uncharacterized protei 22.8 23 0.00059 16.1 -0.1 71 4-80 8-79 (139)
357 TIGR01564 S_layer_MJ S-layer p 22.8 55 0.0014 13.7 3.3 65 159-225 547-616 (626)
358 COG1219 ClpX ATP-dependent pro 22.8 55 0.0014 13.7 3.7 65 117-193 68-133 (408)
359 TIGR01046 S10_Arc_S20_Euk ribo 22.6 55 0.0014 13.6 2.8 35 4-38 7-57 (99)
360 TIGR00478 tly hemolysin A; Int 22.5 55 0.0014 13.6 2.9 75 206-291 75-157 (240)
361 PRK08227 aldolase; Validated 22.4 56 0.0014 13.6 2.3 14 294-307 267-281 (291)
362 PRK11006 phoR phosphate regulo 22.4 56 0.0014 13.6 3.2 49 106-155 97-159 (431)
363 PRK00886 2-phosphosulfolactate 22.4 56 0.0014 13.6 3.5 15 206-224 92-106 (240)
364 KOG0399 consensus 22.3 52 0.0013 13.8 1.6 25 206-230 1165-1189(2142)
365 pfam03269 DUF268 Caenorhabditi 22.2 56 0.0014 13.6 5.1 97 46-154 1-103 (177)
366 COG0117 RibD Pyrimidine deamin 22.1 56 0.0014 13.6 3.6 57 207-263 66-124 (146)
367 PRK05291 trmE tRNA modificatio 22.0 57 0.0014 13.6 4.9 65 4-68 24-98 (445)
368 TIGR02998 RraA_entero regulato 21.9 49 0.0012 14.0 1.4 85 78-183 12-107 (161)
369 cd06341 PBP1_ABC_ligand_bindin 21.6 58 0.0015 13.5 9.9 152 143-301 118-296 (341)
370 cd06359 PBP1_Nba_like Type I p 21.4 58 0.0015 13.5 7.8 160 133-299 110-290 (333)
371 cd05014 SIS_Kpsf KpsF-like pro 21.3 58 0.0015 13.5 4.9 71 7-83 9-79 (128)
372 pfam02084 Bindin Bindin. 21.3 58 0.0015 13.5 1.8 54 88-156 84-139 (239)
373 cd06387 PBP1_iGluR_AMPA_GluR3 21.2 59 0.0015 13.5 7.2 106 154-261 120-230 (372)
374 cd04740 DHOD_1B_like Dihydroor 21.2 59 0.0015 13.5 9.0 153 107-274 105-266 (296)
375 PRK07094 biotin synthase; Prov 21.1 59 0.0015 13.4 4.9 117 66-184 74-210 (323)
376 TIGR02326 transamin_PhnW 2-ami 21.0 36 0.00091 14.9 0.6 27 162-188 84-110 (366)
377 TIGR01035 hemA glutamyl-tRNA r 20.9 60 0.0015 13.4 3.6 38 202-243 176-215 (436)
378 cd03466 Nitrogenase_NifN_2 Nit 20.8 60 0.0015 13.4 8.9 147 105-260 169-348 (429)
379 cd01976 Nitrogenase_MoFe_alpha 20.5 61 0.0016 13.4 5.3 156 106-270 187-356 (421)
380 cd03412 CbiK_N Anaerobic cobal 20.4 61 0.0016 13.4 5.2 47 224-271 57-109 (127)
381 pfam00162 PGK Phosphoglycerate 20.4 61 0.0016 13.4 4.3 26 223-250 299-324 (383)
382 cd02069 methionine_synthase_B1 20.4 61 0.0016 13.4 2.6 16 104-119 103-118 (213)
383 PRK05396 tdh L-threonine 3-deh 20.4 61 0.0016 13.4 7.5 90 208-306 231-335 (341)
384 PRK04435 hypothetical protein; 20.4 61 0.0016 13.4 4.4 70 168-242 30-99 (146)
385 pfam02875 Mur_ligase_C Mur lig 20.3 61 0.0016 13.3 6.9 67 209-275 11-81 (87)
386 COG1411 Uncharacterized protei 20.3 61 0.0016 13.3 2.1 26 247-272 189-214 (229)
387 cd03141 GATase1_Hsp31_like Typ 20.1 62 0.0016 13.3 1.6 33 58-91 16-48 (221)
388 pfam02222 ATP-grasp ATP-grasp 20.1 62 0.0016 13.3 4.5 14 11-24 18-31 (171)
389 pfam09338 Gly_reductase Glycin 20.0 62 0.0016 13.3 1.7 92 168-268 289-383 (428)
No 1
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=0 Score=799.33 Aligned_cols=309 Identities=45% Similarity=0.759 Sum_probs=302.7
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
+.||+|++|++||++||++||++|+++.++||+|||+++++.|||||+|||||||+|+|+||+|||||+|+|||||+||+
T Consensus 124 ~iiFSG~snp~La~~Ia~~Lg~~LG~~~l~rFsDGEi~V~i~EsVRG~DVfIIQSt~~PvNdnLMELLImIDA~KRASA~ 203 (443)
T PTZ00145 124 AILFSGSSNPLLSKDIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAK 203 (443)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 59996899989999999986896311024100697089986463247847998999998203699999999997661567
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCC--CCCEECCHHHHHHHHHHHHCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258--8620001037777876530585
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFD--IPTDNLYALPILERDIKERNDI 158 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~--ip~~nl~~~~~l~~~l~~~~~~ 158 (310)
|||+|+||||||||||++++|+|||||++|+||+++|+|||+|+|||++|+||||+ +|+|||++.|++++||+++ ++
T Consensus 204 rITAVIPYfGYARQDRK~~~R~PISAKlVAnLL~~aGaDRVITmDLHa~QIQGFFd~nIPVDnL~a~pll~~y~~~~-~l 282 (443)
T PTZ00145 204 KITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTKK-DL 282 (443)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CC
T ss_conf 46999147752468787899987059999999986398849997068567624258998621365247679999845-99
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC------CCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHH
Q ss_conf 551885166563578999999709------97999832676763210000245455742899521320336688898987
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLG------CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADAL 232 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~------~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~L 232 (310)
+++||||||.||++||+.||+.|+ +++++++|+|..+++++.+.++|||+||+|||||||||||||+++|++.|
T Consensus 283 ~n~VVVSPD~GgvkRAr~~A~~L~~~~i~d~~lAii~KrR~~~neve~m~iIGDVkGK~~IIVDDmIDTgGTL~~AA~~L 362 (443)
T PTZ00145 283 YKPVIVSPDAGGVYRARKFQDGLNHRGIGDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQL 362 (443)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 88889838997499999999985545567886599996559999366535575027987899677434556799999999
Q ss_pred HHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 526875217872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 233 YEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 233 k~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
+++||++||++||||+||++|+|+|++|+++++|+|||||+++..+.++|++++||||+|||||+|+|+++|||+|||
T Consensus 363 ke~GAk~VyA~aTHGVfSg~AierI~~S~I~evVVTDTIp~~~~~~~~~KI~vLSVA~LlAEAIrRIh~~eSVS~LF~ 440 (443)
T PTZ00145 363 KKHGARRVFAFATHGLFSGPAIDRIEKSPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRIHQKESLNDLFN 440 (443)
T ss_pred HHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 967998799999773078548989754899789987885783100238995798768999999998618997899618
No 2
>PRK05259 consensus
Probab=100.00 E-value=0 Score=764.59 Aligned_cols=310 Identities=75% Similarity=1.121 Sum_probs=306.6
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||++||++++++++++|||||.++|++++|||+||||+||+++|+||+|||||++++|||++||+
T Consensus 1 m~i~sg~s~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~ivqs~~~p~nd~lmELll~i~A~r~~~A~ 80 (310)
T PRK05259 1 MKLFAGNSNRPLAEAIANYLNLPLTKASVRRFADQEIFVEIQENVRGEDVFVIQSTSYPANDHLMELLIMIDALRRSSAR 80 (310)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 98996799899999999996997222288988999889964787789988999079998408899999999999873887
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++.+|||+|+|++|+||+++|+|+|+|+|+|++|+||||++|++|+++.+++++||+++.+.+|
T Consensus 81 ~It~ViPY~~YsRQDr~~~~~e~isak~vA~lL~~~G~d~vitvDlH~~~i~gfF~ip~dnl~a~~~l~~~i~~~~~~~~ 160 (310)
T PRK05259 81 RITAVIPYFGYARQDRKPGPRTPISAKLVANLITEAGADRVLTLDLHAGQIQGFFDIPTDNLYAAPVMARDIKARYDLGN 160 (310)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCEEEEEEEHHHHHHHHCCCCC
T ss_conf 17999414551115577899986658887511210477668996278577785159976649826711678986389766
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++|||||.||++||+.+|+.||+++++++|+|+++++++.+.++|||+||+|||||||||||||+++|++.||++||++|
T Consensus 161 ~vvVsPD~G~~~ra~~~a~~l~~~~~~~~K~R~~~~~~~~~~~~gdV~Gk~~IIvDDiIdTGgTl~~aa~~Lk~~GA~~V 240 (310)
T PRK05259 161 VMVVSPDVGGVVRARALAKRLDAPLAIVDKRRERPGESEVMNVIGDVSGRDCILIDDIVDSGGTLCNAAEALLANGANSV 240 (310)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEE
T ss_conf 39991492699999999998199678999860689954334545662312489517344168899999999987799869
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 7872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 241 ~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
|++||||+|+++|++||+++++++||+|||||+++..++++|++++|+||+||++|+|+|+|+|||+|||
T Consensus 241 ~~~~THgvfs~~A~~ri~~s~i~~vvvTdTi~~~~~~~~~~kl~vlsva~llAeaI~r~~~~~Sis~lfd 310 (310)
T PRK05259 241 TAYITHGVLSGGAVARIASSKLKELVITDSIQPTEAVNDAPNIRVLSIAPLIGEAIRRTAAEESVSSLFD 310 (310)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 9999785368569999862899789993897888457058993999829999999999867997588559
No 3
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=762.47 Aligned_cols=308 Identities=50% Similarity=0.850 Sum_probs=300.4
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||++||+++++++++||||||+++++.|+|||+|||||||+++|+||+|||||+|+||||++||+
T Consensus 22 ~~ifsg~s~~~La~~Ia~~Lg~~l~~~~~~kF~DGE~~v~i~esVrg~dV~iiqs~~~pvnd~lmELll~idA~krasA~ 101 (331)
T PRK02812 22 LRLFSGSSNPALAQEVARYLGIDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASAR 101 (331)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 89997899999999999996898534078988999889865687788769998379998418999999999998775787
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++++|||||+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.|++++|++++ ++++
T Consensus 102 ~It~ViPY~~YaRQDrk~~~re~IsaklvA~lL~~aG~d~vitvDlH~~qiqgfF~iPvd~l~a~~~l~~yi~~~-~~~~ 180 (331)
T PRK02812 102 QITAVIPYYGYARADRKTAGRESITAKLVANLITKAGVDRVLAMDLHSAQIQGYFDIPCDHIYGSPVLIDYLASK-NLED 180 (331)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEECCCHHHHHHHHC-CCCC
T ss_conf 279983255435567666899983499999788734887588734662888633699743146760679999862-8887
Q ss_pred EEEEECCCCHHHHHHHHHHHC-CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 188516656357899999970-9979998326767632100002454557428995213203366888989875268752
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRL-GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L-~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~ 239 (310)
++|||||.||++||+.||+.| +.++++++|+|..+++++.+.++|||+||+|||||||||||||+++|++.||++||++
T Consensus 181 ~vVVsPD~G~~krA~~~A~~L~~~~~a~~~K~R~~~~~~~~~~~vGdV~Gr~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~ 260 (331)
T PRK02812 181 IVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKR 260 (331)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 17974794089999999997279958999424578884210244455456518996214422799999999998579987
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC-CEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 17872055557168988863699-899981788784347407985998117999999998718887313009
Q gi|254780409|r 240 VTAYITHGVLSSSSIERIEKSKM-KELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 240 V~~~~THgifs~~a~e~l~~s~i-~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
||++||||+|+++|++||.++++ ++||+|||||+++. +.++|++++||||+||++|+|+|+|+|||+||-
T Consensus 261 V~a~aTHgvfsg~A~~rl~~s~ii~~vvvTdTip~~~~-~~~~ki~vlsvA~llAeaI~ri~~~~Svs~Lf~ 331 (331)
T PRK02812 261 VYACATHAVFSPPAIERLSASGLFEEVIVTNTIPVPEE-RRFPQLKVLSVANMLGEAIWRIHEESSVSSMFR 331 (331)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCHH-HCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 89999896558779999972897677998089448500-069981998738999999999877997688529
No 4
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=761.58 Aligned_cols=309 Identities=66% Similarity=0.971 Sum_probs=304.8
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||+.||++++++++++|||||.++|++++|||+||||+||++.|+||+|||||++++|||++||+
T Consensus 1 m~if~g~~~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~ivqs~~~p~nd~lmElll~i~A~r~a~A~ 80 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKRLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALRRASAG 80 (309)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 98994799889999999986998120278888999889863788779828998679999517799999999999874887
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++++|||+|+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.+++++||+++ +++|
T Consensus 81 ~It~ViPY~~Y~RQDr~~~~re~isak~va~ll~~~G~d~vit~DlH~~qi~gfF~ipvd~l~a~~~l~~~i~~~-~~~~ 159 (309)
T PRK01259 81 RITAVIPYFGYARQDRKASARVPITAKLVANLLSSAGADRVLTVDLHADQIQGFFDIPVDNLYGSPILLEDIKKK-NLEN 159 (309)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCEEEECCHHHHHHHHHC-CCCC
T ss_conf 179972466503687777999867599999998523787389981676777542489711674408999999863-8887
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++|||||.|+.+||+.+|+.||+++++++|+|+++++++.+.++|||+||+||||||||||||||++|++.|+++||++|
T Consensus 160 ~vvVsPD~G~~~ra~~~A~~lg~~~~~~~K~R~~~~~~~~~~~iGdV~Gk~vIIvDDiI~TGgTl~~aa~~Lk~~GA~~V 239 (309)
T PRK01259 160 LVVVSPDVGGVVRARALAKRLDTDLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTGGTLCKAAEALKERGAKSV 239 (309)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEE
T ss_conf 38991498689999999997299879999860688833334446775664399976534345659999999975699669
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 7872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 241 ~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
+++||||+|+++|+++|+++++++|++|||+|++++.+.++|++++|+||+||+||+|+|+|+|||+|||
T Consensus 240 ~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~~~~~~~~~kl~vlsva~llAeaI~ri~~~~Svs~Lf~ 309 (309)
T PRK01259 240 FAYATHPVLSGGAAERIANSVLDELVVTDSIPLSEEIKKCPKIRQLSLAPLLAEAIRRISNEESISSLFD 309 (309)
T ss_pred EEEEECHHCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 9998763139459999870899889981896686222458981899818999999999857997688559
No 5
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=757.62 Aligned_cols=309 Identities=40% Similarity=0.676 Sum_probs=300.9
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|.||+||+|++||++||+.||++++++++++|||||+++|++++|||+|||||||+++|+||+|||||+|+|||||+||+
T Consensus 18 ~~ifsgss~~~LA~~Ia~~Lg~~l~~~~~~~F~DGE~~v~i~e~VRg~dV~Iiqs~~~pvnd~lmELll~idA~rrasA~ 97 (340)
T PRK00553 18 HVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAK 97 (340)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 79997799889999999985997413178987999789852787689988998789999526899999999999870788
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++++|||||+|++|+||+++|+|||+|+|+|++|+||||++|++|+++.+++.+|+.+..+.+|
T Consensus 98 ~It~ViPY~~YaRQDrk~~~repIsak~vA~lL~~~G~drvitvDlH~~qiqgfF~iPvd~l~a~~~~~~~~~~~~~~~~ 177 (340)
T PRK00553 98 SITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKD 177 (340)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 26999666665547876789998439999856763588569984356588852169986521062889999998649766
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++|||||.||++||+.+|+.||+++++++|+|.++++++.+.++|||+||+|||||||||||||+++|++.|+++||++|
T Consensus 178 ~vVVsPD~G~~krA~~~A~~L~~~~a~~~K~R~~~~~~e~~~~iGdV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V 257 (340)
T PRK00553 178 LVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKV 257 (340)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 48988996389999999998299679985345789864113445554685489525244312569999999998799879
Q ss_pred EEEEECCCCCHHHHHHHHHC----CCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 78720555571689888636----99899981788784347407985998117999999998718887313009
Q gi|254780409|r 241 TAYITHGVLSSSSIERIEKS----KMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 241 ~~~~THgifs~~a~e~l~~s----~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
|++||||+||++|+|||+++ .++++++|||||++ ..++++|++++||||+||++|+|+|+|+|||+||+
T Consensus 258 ~a~aTHgvfsg~A~eri~~~~~~~~i~~vvvTnTip~~-~~~~~~kl~vlsva~llaeaI~ri~~~~SvS~LF~ 330 (340)
T PRK00553 258 CVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQT-KFEKKPQFKVVDLAHLYEEVLLCYANGGSISAIYT 330 (340)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCH-HHHCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99997951485799999852025776589985788772-56559982998779999999999867996899877
No 6
>PRK04554 consensus
Probab=100.00 E-value=0 Score=755.92 Aligned_cols=309 Identities=56% Similarity=0.875 Sum_probs=303.0
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+||+|++||++||+.||++++++++++|||||+++|+.++|||+||||+||+++|+||+|||||++++|||++||+
T Consensus 7 ~~ifsgss~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~esVrg~dV~iiqs~~~~~nd~lmELll~idA~rra~A~ 86 (327)
T PRK04554 7 LMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVAVELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAG 86 (327)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 79997899899999999996898412288988999888741787789818999179998247799999999999872887
Q ss_pred HHHHHCCCCCHHHCCCCCCC-CCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCC
Q ss_conf 01131023301103431125-65214777652000026772699515835776525886200010377778765305855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSP-RTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~-~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~ 159 (310)
+||+|+|||||+||||++++ ++|+|+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.+++++|++++ +++
T Consensus 87 ~It~ViPY~~YaRQDr~~~~gr~pIsak~vA~lL~~~G~d~vitvDlH~~qiqgfF~ipvd~l~a~~~l~~~i~~~-~~~ 165 (327)
T PRK04554 87 RITTAIPYFGYARQDRRPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIKQQ-RIE 165 (327)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHC-CCC
T ss_conf 2799944656433676657886751299998557625988504762684887343689702111219999999860-778
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 51885166563578999999709979998326767632100002454557428995213203366888989875268752
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~ 239 (310)
|++|||||.|+.+||+.+|+.||+++++++|+|.++++++...++|||+||+|||||||||||||+++|++.|+++||++
T Consensus 166 ~~vvVsPD~G~~~ra~~~A~~L~~~~a~~~K~R~~~~~~~~~~~vgdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~ 245 (327)
T PRK04554 166 NLTVVSPDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQGRTCLIVDDMIDTANTLCKAAVALKERGAER 245 (327)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 72898379538999999997568877999964489982265125564122236720432135067999999999769987
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 17872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 240 V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
||++||||+|+++|++||.++++++||+|||||+++..++++|++++||||+||++|+|+|+|+|||+|||
T Consensus 246 V~~~aTHglfs~~A~~rl~~s~i~~ivvTnTIp~~~~~~~~~Ki~vlsva~llAeaI~rih~~~SvS~LF~ 316 (327)
T PRK04554 246 VLAYASHAVFSGEAVSRIASSEIDQVVVTDTIPLSEAAKNCDRIRQVTIAGLLAETVRRISNEESVSYLFN 316 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 89998791606339999971899789991897687456258980998889999999999867995799829
No 7
>PRK02039 consensus
Probab=100.00 E-value=0 Score=754.25 Aligned_cols=309 Identities=57% Similarity=0.880 Sum_probs=302.7
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+||+|++||++||++||++++++++++|||||+++|++++|||+||||+||+++|+||+|||||+|++|||++||+
T Consensus 6 ~~ifsgss~~~LA~~Ia~~Lg~~l~~~~~~~F~DGE~~v~i~esvrg~dV~ivqs~~~p~nd~lmELll~idA~r~a~A~ 85 (316)
T PRK02039 6 LMVFTGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAG 85 (316)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 79997999889999999996997312189988999889863787689988999289998207899999999999873887
Q ss_pred HHHHHCCCCCHHHCCCCCCCCC-CHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCC
Q ss_conf 0113102330110343112565-214777652000026772699515835776525886200010377778765305855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRT-PISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e-~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~ 159 (310)
+||+|+|||||+||||++++|+ |+|+|++|+||+++|+|+|+|+|+|++|+||||++|++|+++.+++++|++++ +++
T Consensus 86 ~It~ViPY~~YaRQDr~~~~gr~pisak~vA~ll~~aG~d~vitvDlH~~qi~gfF~iPv~~l~a~~~~~~~~~~~-~~~ 164 (316)
T PRK02039 86 RITAAIPYFGYARQDRRPRSARVAISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQ-NYS 164 (316)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEECCHHHHHHHHHH-CCC
T ss_conf 4899842545334776556887653099999876232777048852783888306799700021408888999861-778
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 51885166563578999999709979998326767632100002454557428995213203366888989875268752
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~ 239 (310)
|++|||||.||++||+.+|+.||+++++++|+|.++++++...++|||+||+|||||||||||||+++|++.|+++||++
T Consensus 165 ~~vvVsPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~~e~~~~igdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~ 244 (316)
T PRK02039 165 DLLVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQ 244 (316)
T ss_pred CCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCE
T ss_conf 73898469408899999999829997999841588870363024665389726711725545688999999999769985
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 17872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 240 V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
||++||||+|+++|++||+++++++||+|||||+++..+.++|++++|+||+||++|+|+|+|+|||+||.
T Consensus 245 V~~~~THgvfs~~A~~rl~~s~i~~vvvTnTip~~~~~~~~~ki~vlsva~llAeaI~rih~~~Svs~Lf~ 315 (316)
T PRK02039 245 VFAYATHPVLSGGAAERIAASALDELVVTDTIPLSAESLACPKIRQLSSAGLLAETFSRIRRGDSVMSLFA 315 (316)
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 79999784257349999860899789993898886344458980999879999999999867997789618
No 8
>PRK02270 consensus
Probab=100.00 E-value=0 Score=754.91 Aligned_cols=308 Identities=43% Similarity=0.696 Sum_probs=301.6
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||+.||++++++++++|||||+++|++++|||+|||||||+++|+||+|||||+|+|||||+||+
T Consensus 6 ~~ifsgss~~~LA~~IA~~Lg~~l~~~~~~~F~DGE~~v~i~esvrg~dV~ivqs~~~pvnd~lmELll~idA~rrasA~ 85 (327)
T PRK02270 6 IILFGMENSIDLAKEISKITNIPLSTIEKTVFADGEVLLKSKETVRNRDVFIVASTSRPVNENIMELLIFIDSLKRASAK 85 (327)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 79997999899999999996997312288998999889842787789808998789999317899999999999873887
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++++|||+|+|++|+||+++|+|||+|+|+|++|+||||++|++||++.+.+++|++++ .++
T Consensus 86 ~It~ViPY~~YaRQDrk~~~repIsaklvA~lL~~~G~d~vitvDlH~~qiqgfF~iPvd~l~a~~~l~~~i~~~--~~~ 163 (327)
T PRK02270 86 EINVILSYYGYARQDRKSSGRQPIGAKLVADLLEKAGATKIISVDLHNPSIQGFFDIPVDDIKGQYILAKELKKK--NEK 163 (327)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCEEEECCHHHHHHHHHC--CCC
T ss_conf 258971254434477766899863399999988524786478843576888504699730477427879988640--687
Q ss_pred EEEEECCCCHHHHHHHHHHHCC--CCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 1885166563578999999709--97999832676763210000245455742899521320336688898987526875
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLG--CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~--~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~ 238 (310)
++|||||.||++||+.+|+.|| .++++++|+|..+++++.+.++|||+||+|||||||||||||+++|++.|+++||+
T Consensus 164 ~vvVsPD~G~~~ra~~~a~~Lg~~~~~a~~~K~R~~~~~~e~~~~iGdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~ 243 (327)
T PRK02270 164 FTVVSPDHGGAVRARILAEIISDQIKIAIIDKRRTGANKSEVLGLIGDVDGKNAVIIDDIIDTGGTIINAAEVLKEKGAK 243 (327)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 18997697489999999998538974888502467877423520456312014899767000547799999999987998
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 217872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 239 ~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
+||++||||+|+++|.++++++++++||+|||||+++..++++|++++|+||+||++|+|+|+++|||+|||
T Consensus 244 ~V~~~aTHgvfs~~a~~~~~~s~i~~ivvTnTip~~~~~~~~~kl~vlsva~llaeaI~ri~~~~Sis~lf~ 315 (327)
T PRK02270 244 KIVLAATHGLFSKGFEIFEENPNIDKVIITNSIDNKELAKKFKKLLIVSLAEFLSKVILACIFSESISSIYD 315 (327)
T ss_pred EEEEEEECHHCCCHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 799999774438049999658998789993886684335028982998879999999999867997799998
No 9
>PRK01506 consensus
Probab=100.00 E-value=0 Score=751.36 Aligned_cols=308 Identities=56% Similarity=0.848 Sum_probs=302.1
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||++||++++++++++|||||.++|++++|||+|||||||+++|+||+|||||++++|||++||+
T Consensus 10 m~ifsgss~~~La~~iA~~Lg~~l~~~~~~~F~DGE~~vri~~~vrg~dV~ivqs~~~p~nd~lmELll~i~a~r~~gA~ 89 (317)
T PRK01506 10 LKVFSLNSNKELAEEIAKHIGVGLGKCSVDRFSDGEVQINIEESIRGCDVFIIQSTSAPVNEHIMELLIMIDALKRASAK 89 (317)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 59997999889999999986998321178887999889987787789828998589999208999999999998873897
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++++|||+|+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.+++++|++++ ++++
T Consensus 90 ~It~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~l~~~~~~~-~~~~ 168 (317)
T PRK01506 90 TINIVIPYYGYARQDRKARSREPITAKLVANLLETAGATRVITLDLHAPQIQGFFDIPIDHLMGVPILSDYFETK-GLKD 168 (317)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEEEECHHHHHHHHHC-CCCC
T ss_conf 489962676524376433588761389888787415885379962784877501699843158508888899854-8877
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++|||||.||.+||+.+|+.||+++++++|+|.++++++.+.++|||+||+|||||||||||||+++|++.|+++||++|
T Consensus 169 ~vVVsPD~Ga~kra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~Gr~vIIVDDiI~TGgTl~~aa~~Lk~~GA~~V 248 (317)
T PRK01506 169 IVIVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIIGNIEGKTAILIDDIIDTAGTITLAANALVENGASEV 248 (317)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCCEE
T ss_conf 48990492489999999997299668898641799804630245655796278751322135059999999986599758
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 7872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 241 ~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
+++||||+|+++|+++|+++++++||+|||||+++. +.++|++++||||+||++|+|+|+|+|||+|||
T Consensus 249 ~~~~THglfs~~A~~rl~~s~i~~iv~TnTip~p~~-~~~~kl~vlsva~llAeaI~ri~~~~Sis~Lf~ 317 (317)
T PRK01506 249 YACCTHPVLSGPAIERIQNSKIKELVVTNSIVLPEE-KKIDKVHELSVAPLIAEAIIRVYEEESVSVLFD 317 (317)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHH-HCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 999977006817999986189988999388448612-337983998849999999999867997688559
No 10
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=752.49 Aligned_cols=309 Identities=59% Similarity=0.911 Sum_probs=302.4
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|++|+|+++++||++||+.||.++++++++||||||.++|++|+|||+||||+||+++|+||+|||||+|+||||++||+
T Consensus 5 ~~if~g~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~ 84 (314)
T COG0462 5 MKIFSGSSNPELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAK 84 (314)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 59997788789999999860998534247786999689984265268769999089998688999999999998865886
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
|||+|+||||||||||++++|||||+|++|+||+.+|+|||+|+|+|++|+||||++|++||++.|++++|++++.++++
T Consensus 85 ~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~~~~d 164 (314)
T COG0462 85 RITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKYDLDD 164 (314)
T ss_pred EEEEEEECCHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 58999316513225765689997729999999997299869997078656556678840364045999999997367778
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCC-CCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 188516656357899999970997999832676-7632100002454557428995213203366888989875268752
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRRE-HPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~-~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~ 239 (310)
++|||||.||++||+.+|+.||+++++++|+|+ .+++++.+.++|||+||+|+|||||||||||+++|++.|+++||++
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~ 244 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKK 244 (314)
T ss_pred CEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 68988884379999999998099879999872589974797034336779879999365136568999999999779975
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 17872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 240 V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
||++||||+|+++|.|+++++.+++|++|||+|++ ..+.++|++++|+||+||++|+|+|+++|+|.||+
T Consensus 245 V~a~~tH~vfs~~a~~~l~~~~i~~vivTnTi~~~-~~~~~~~~~~isva~liaeaI~ri~~~~svs~lf~ 314 (314)
T COG0462 245 VYAAATHGVFSGAALERLEASAIDEVIVTDTIPLP-EKKKIPKVSVISVAPLIAEAIRRIHNGESVSSLFD 314 (314)
T ss_pred EEEEEECHHHCHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 99999836607089999864887679982783465-31145735798858999999999875997257429
No 11
>PRK05038 consensus
Probab=100.00 E-value=0 Score=750.15 Aligned_cols=309 Identities=55% Similarity=0.883 Sum_probs=302.1
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||+.||++++++++++|||||.++|++++|||+||||+||+++|+||+|||||++++|||++||+
T Consensus 4 m~ifsg~s~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~ivqs~~~p~nd~lmELll~idA~r~a~A~ 83 (315)
T PRK05038 4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDVFIIQSTCAPTNDNLMELVVMVDALRRASAG 83 (315)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 19997899889999999986898402078887999889887887789958998589999517899999999999873887
Q ss_pred HHHHHCCCCCHHHCCCCCCCC-CCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCC
Q ss_conf 011310233011034311256-5214777652000026772699515835776525886200010377778765305855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPR-TPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~-e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~ 159 (310)
+||+|+|||||+||||++++| +|||+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.+++++|+.++ +++
T Consensus 84 ~It~ViPY~~YaRQDr~~~~g~~pIsak~vA~ll~~~g~d~vitvDlH~~~i~gfF~iPvdnl~a~~~~~~~~~~~-~~~ 162 (315)
T PRK05038 84 RITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQK-NLD 162 (315)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHHEECHHHHHHHHHHH-CCC
T ss_conf 2699832543234775556888870199999999853887599965885898634589711110419999999970-888
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 51885166563578999999709-97999832676763210000245455742899521320336688898987526875
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLG-CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~-~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~ 238 (310)
+++|||||.||.+||+.+|+.|| .++++++|+|.++++++.+.++|||+||+||||||||||||||++|++.|+++||+
T Consensus 163 ~~vVVsPD~g~~~ra~~~A~~l~~~~~~~~~K~R~~~~~~~~~~~~gdV~Gk~~iIVDDiIdTGgTl~~aa~~Lk~~GA~ 242 (315)
T PRK05038 163 NPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCILVDDMIDTGGTLCKAAEALKERGAK 242 (315)
T ss_pred CCEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 75798159149999999998708987799985037887314403456434413799757222515899999999965998
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 217872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 239 ~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
+||++||||+|+++|+++|.++++++||+|||||++++.+.++|++++|+||+||++|+|+|+|+|||+|||
T Consensus 243 ~V~~~~THglfs~~A~~~l~~s~i~~ivvTnTip~~~~~~~~~kl~vlsva~llAeaI~ri~~~~Sis~Lf~ 314 (315)
T PRK05038 243 RVFAYATHPVFSGNAAENIRNSVIDEVIVTDTIPLSDEIKALPKVRTLTLSGMLAEAIRRISNEESISAMFE 314 (315)
T ss_pred CCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 635998653558369999860899889992897789456358981999829999999999857996799728
No 12
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=746.57 Aligned_cols=309 Identities=50% Similarity=0.790 Sum_probs=298.3
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||++||++++++++++|||||.++|++++|||+||||+||+++|+||+|||||++++|||++||+
T Consensus 6 ~~lf~gss~~~La~~IA~~Lg~~l~~~~~~~F~DGE~~v~i~e~vrg~dV~ivqs~~~pvnd~lmELll~idAlr~a~A~ 85 (321)
T PRK02269 6 LKLFALSSNKELAEKVASAIGIQLGKSTVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAE 85 (321)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 59998999989999999986998242288988999889875787789808999079999537999999999999874897
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHH-CCCC
Q ss_conf 011310233011034311256521477765200002677269951583577652588620001037777876530-5855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKER-NDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~-~~~~ 159 (310)
+||+|+|||||+||||++++|||+|+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.|++++||+++ ..++
T Consensus 86 ~It~ViPY~~YaRQDr~~~~ge~isak~vA~lL~~~g~d~vitvDlH~~~i~gfF~ipv~~l~~~~~~~~~i~~~~~~~~ 165 (321)
T PRK02269 86 SISVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRHGLVGE 165 (321)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCC
T ss_conf 39998135531304544578997269999998874487779996267477763269984111303899999998479876
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC--CCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 51885166563578999999709979998326767--6321000024545574289952132033668889898752687
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREH--PGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~--~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA 237 (310)
+++|||||.|+.+||+.+|+.||+++++++|+|.. .+.++...++|||+||+|||||||||||||+++|++.|+++||
T Consensus 166 ~~vvVsPD~G~~~ra~~~A~~l~~~~~~~~K~R~~~~~~~~~~~~~~gdV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA 245 (321)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVSGKKCILIDDMIDTAGTICHAADALAEAGA 245 (321)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCC
T ss_conf 70897179319999999998627878999987368988743420357740697699966243142669999999984899
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 5217872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 238 LSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 238 ~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
++||++||||+|+++|++||.++++++||+|||||+++. +.++|++++||||+||++|+|+|+|+|||+|||
T Consensus 246 ~~V~~~~THgvfs~~A~~rl~~s~i~~ivvTdTi~~p~~-~~~~ki~~lsva~llAeaI~ri~~~~Svs~Lf~ 317 (321)
T PRK02269 246 TAVYASCTHPVLSGPALDNIQKSAIEKLIVLDTIYLPEE-RLIDKIEQISIADLVAEAIIRIHEKRPLSPLFE 317 (321)
T ss_pred CEEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCHH-HCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 827999978027847999986089988998089778644-558982898768999999999867997899828
No 13
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=743.12 Aligned_cols=310 Identities=55% Similarity=0.864 Sum_probs=302.2
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||+.||++++++++++|||||+++|++++|||+|||||||+++|+||+|||||+|++|||++||+
T Consensus 7 m~i~sgs~~~~LA~~iA~~Lg~~l~~~~~~~F~DGE~~v~i~e~vrg~dv~ivqs~~~~~nd~lmELll~idAlr~a~A~ 86 (319)
T PRK04923 7 LLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAS 86 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 79997899889999999986996140289988999888875787579988999379998078999999999999875887
Q ss_pred HHHHHCCCCCHHHCCCCCCCCC-CHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCC
Q ss_conf 0113102330110343112565-214777652000026772699515835776525886200010377778765305855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRT-PISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e-~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~ 159 (310)
+||+|+|||||+||||++++|+ |||+|++|+||+++|+|||+|+|+|++|+||||++|++|+++.+++++++.+..+.+
T Consensus 87 rIt~ViPY~~YsRQDr~~~~g~~pIsak~vA~lL~~~gvdrvitvDlH~~qi~gfF~ipv~~l~a~~~l~~~~~~~~~~~ 166 (319)
T PRK04923 87 SVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMICAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAYGTD 166 (319)
T ss_pred EEEEEECCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 27998325532000133466768702999998861258762798448879985405997454117299999999845987
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 51885166563578999999709-97999832676763210000245455742899521320336688898987526875
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLG-CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~-~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~ 238 (310)
|++|||||.||++||+.+|+.|| .++++++|+|..+++++...++|||+||+|||||||||||||+++|++.|+++||+
T Consensus 167 ~~vvVsPD~G~~~ra~~~A~~Lg~~~~~~~~K~R~~~~~~~~~~~~gdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~ 246 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGAL 246 (319)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCCCCCCCEEEEECCHHCCCHHHHHHHHHHHHCCCC
T ss_conf 71898479428899999998708986799985448998211024444437966999664320651299999999875998
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 217872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 239 ~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
+|+++||||+|+++|++||.++++++|++|||||+++..+.++|++++|+||+||++|+|+|+|+|||+||-
T Consensus 247 ~V~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~~~~~~~kl~vlsva~llA~aI~ri~~~~Svs~Lf~ 318 (319)
T PRK04923 247 KVVAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARTCAKIRQLSVAELLAETIRRIAFGESVSSLYV 318 (319)
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 689999797688679999970899889982896586223358983899738999999999867997689618
No 14
>PRK04117 consensus
Probab=100.00 E-value=0 Score=740.17 Aligned_cols=305 Identities=56% Similarity=0.888 Sum_probs=298.8
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+||+|++||++||+.||++++++++++|||||.++|++++|||+||||+||+++|+||+|||||++++|||++||+
T Consensus 4 ~~i~sgss~~~La~~ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~vrg~dV~ivqs~~~p~nd~lmELll~~~a~r~agA~ 83 (309)
T PRK04117 4 YKIFSGSANPEFAKEVSKYLGLPLSKATIKRFSDGEINVQISESVRGKDVFIIQPTCAPANDNLMELLIMTDALRRSSAN 83 (309)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 49997899899999999997898322188988999888866887789988999179998248899999999999874897
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++++|||+|+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.+++++|++++ +++|
T Consensus 84 ~It~ViPY~~YsRQDr~~~~ge~isak~vA~lL~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~~~~~i~~~-~~~~ 162 (309)
T PRK04117 84 SITAVVPYFGYARQDRKAAPRVPITAKLVANLMQAAGIDRVVTMDLHAGQIQGFFDIPVDNLYGSIVFRDYIKSK-NLKN 162 (309)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCEEECCHHHHHHHHHH-CCCC
T ss_conf 388960355002144456999870189999888642776589961786887403689733034538778999961-8887
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++|||||.|+.+||+.+|+.||+++++++|+|+++++++.+.++|||+||+||||||||||||||++|++.|+++||++|
T Consensus 163 ~vvVsPD~Ga~~ra~~~A~~Lg~~~~~~~K~R~~~~~~~~~~~~gdV~Gk~vIIVDDiI~TGgTi~~aa~~L~~~GA~~V 242 (309)
T PRK04117 163 PIIASPDIGGVARARYFAKKLGLDMVIVDKRREKANESEVMNIIGDVKGKDVILVDDMIDTAGTIVKAAEALKEKGATSV 242 (309)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 46971593199999999874278879985113788854323445664898689757256527999999999986699748
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHC
Q ss_conf 787205555716898886369989998178878434740798599811799999999871888731300
Q gi|254780409|r 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLF 309 (310)
Q Consensus 241 ~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~ 309 (310)
|++||||+|+++|++||.++++++|++|||+|+.+ +++|++++||||+||++|+|+|+|+|||+||
T Consensus 243 ~~~~THglfs~~A~~rl~~s~i~~ivvTnTip~~~---~~~kl~~isVa~llAeaI~ri~~~~Svs~Lf 308 (309)
T PRK04117 243 MACCTHAVLSGPAYERIAKGALDELVVTNTIPLKE---ELPKIKVLSVAPLFAEVIRRVYHNESVNSLF 308 (309)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCC---CCCCEEEEEHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 99994554583699999838997899828987744---5998099883999999999986799717855
No 15
>PRK01999 consensus
Probab=100.00 E-value=0 Score=736.16 Aligned_cols=304 Identities=50% Similarity=0.790 Sum_probs=296.3
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+||+|++||++||+.||++++++++++|||||+++|++++|||+||||+||+++ .||+|||||+|++|||++||+
T Consensus 6 ~ki~~gss~~~LA~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~ivqs~~p-~~d~lmELll~~dA~r~~~A~ 84 (311)
T PRK01999 6 AKVFSGTNSRYLAEKICASLGCPLGNMNISHFADGEFAVSYEESIRGADVFLVQSTFP-NSDNLMELLLMIDAAKRASAR 84 (311)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCC
T ss_conf 4899889989999999998699613128898899988986178767983899889999-816899999999889865886
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
+||+|+|||||+||||++++|||+|+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.+++++|+++. +.+|
T Consensus 85 ~It~ViPY~~YaRQDr~~~~~e~isak~va~lL~~~G~d~vitvDlH~~~i~gfF~ipv~~l~a~~~~~~~~~~~-~~~~ 163 (311)
T PRK01999 85 SITAVIPYFGWARQDRKDKPRVSIGAKLVADLLSVAGIDRLITMDLHADQIQGFFDKPVDHLYASTVFLPYIRSL-KLDN 163 (311)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHC-CCCC
T ss_conf 389962554433376656899867677744343015786589982683888744799876443758899999963-9876
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++|||||.|+.+||+.+|+.||+++++++|+|+++++++.+.++|||+||+||||||||||||||++|++.|+++||++|
T Consensus 164 ~vvVsPD~g~~kra~~~A~~Lg~~~~~~~K~R~~~~~v~~~~~~gdV~Gk~~IIVDDiIdTGgTl~~aa~~L~~~GA~~V 243 (311)
T PRK01999 164 LVIATPDVGGSKRASAYSKYLGVPVVICYKSREKANEIASMQIIGDVKGKNVILVDDMVDTAGTITKAADLMMEKGAKSV 243 (311)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 08981590499999999986178723311024678841131334354796699975444434789999999985599738
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHC
Q ss_conf 787205555716898886369989998178878434740798599811799999999871888731300
Q gi|254780409|r 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLF 309 (310)
Q Consensus 241 ~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~ 309 (310)
+++||||+|+++|++||+++++++|++|||+|+++ +++|++++||||+||++|+|+|+|+|||+||
T Consensus 244 ~~~~THglfs~~A~~rl~~s~i~~iv~TdTip~~~---~~~k~~visva~llAeaI~ri~~~~Sis~lf 309 (311)
T PRK01999 244 RAIASHAVMSGPASERVENSKLTEMIFTDSIPYRK---KCSKVKVLSVADLFAEAIKRVMNNESISSLY 309 (311)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCC---CCCCCEEEEHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 99994554585599999748998899837855855---6998489876899999999986799779953
No 16
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=735.08 Aligned_cols=307 Identities=46% Similarity=0.733 Sum_probs=296.1
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+|++|++||++||+.||++++++++++|||||+++|++++|||+|||||||+++|+||+|||||+|++|||++||+
T Consensus 10 ~~ifsgss~~~La~~ia~~Lg~~l~~~~~~~FpDGE~~v~i~e~Vrg~dV~iiqs~~~p~nd~lmELll~idA~r~agA~ 89 (323)
T PRK02458 10 IKLFSLNSNLPIAEKIAKAAGIPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASAN 89 (323)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 59997999999999999996898412188988999889864787789838998689989308999999999999873887
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHH-CCCC
Q ss_conf 011310233011034311256521477765200002677269951583577652588620001037777876530-5855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKER-NDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~-~~~~ 159 (310)
+||+|+|||||+||||++++|||||+|++|+||+++|+|+|+|+|+|++|+||||++|++||++.+++++|++++ ..++
T Consensus 90 ~It~ViPY~~YaRQDr~~~~gepIsak~vA~lL~~~G~d~vitvDlH~~~i~gfF~ipv~nl~a~~~~~~~~~~~~~~~~ 169 (323)
T PRK02458 90 TVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAEHYSKLGLSGS 169 (323)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCC
T ss_conf 18998324654547766589987419999999875388657884278187740468972347710999999998379976
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 51885166563578999999709979998326767632100002454557428995213203366888989875268752
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~ 239 (310)
+++|||||.||++||+.+|+.||+++++++|+|...+..+ ..++|||+||+|||||||||||||+++|++.|+++||++
T Consensus 170 ~~vvVsPD~G~~~ra~~~A~~L~~~~~~i~k~r~~~~~~~-~~ivgdV~Gr~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~ 248 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYLDSPIAIIDYAQDDSEREE-GYIIGDVSGKKAILIDDILNTGKTFAEAAKILERSGATE 248 (323)
T ss_pred CCEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCE-EEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 7089757830568899999860587137986216897412-231366689667876202322488999999999649976
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 17872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 240 VTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 240 V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
|+++||||+|+++|+++|++|++++||+|||||+.+ +.++|++++|+||+||++|+|+|+++|||.||+
T Consensus 249 V~~~~THglfs~~A~~rl~~s~i~~ivvTnTi~~~~--~~~~ki~vlsva~llAeaI~rih~~~Svs~LF~ 317 (323)
T PRK02458 249 IYAVASHGLFAGGAAEVLETAPIKEILVTDSVKTKE--RVPKNVTYLSASELIAEAIIRIHERKPLSPLFS 317 (323)
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCEEEECCCCCCHH--HCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 899997642570799998649986899858978722--448988898779999999999867997799808
No 17
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=717.14 Aligned_cols=298 Identities=45% Similarity=0.778 Sum_probs=289.6
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCH
Q ss_conf 99999999589104448998699707888567868970899859788804679999999999986172001131023301
Q gi|254780409|r 12 LAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGY 91 (310)
Q Consensus 12 La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~Y 91 (310)
||++||+.||++++++++++|||||+++|++++|||+||||+||+++|+||+|||||+|++|||++||++||+|+|||||
T Consensus 1 LA~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~Ivqs~~~p~nd~lmELll~i~alk~~~A~~It~ViPY~~Y 80 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTARDFANGEIYVRFEESVRGCDAFVLQSHPAPVNKWLMEQLIMIDALKRASAKRITVVLPFYPY 80 (304)
T ss_pred CHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 97899998599840317898899988987478767984899917999951889999999999997589727998057760
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 10343112565214777652000026772699515835776525886200010377778765305855518851665635
Q gi|254780409|r 92 CRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGV 171 (310)
Q Consensus 92 aRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~ 171 (310)
+||||++++|||+|+|++|+||+.+|+|+|+|+|+|++|+||||++|++||++.+++++|++++.+.+|++|||||.|++
T Consensus 81 sRQDr~~~~ge~isa~~va~lL~~~G~d~vitvDlH~~~i~gfF~~pv~~l~a~~~l~~~i~~~~~~~~~vvvsPD~Ga~ 160 (304)
T PRK03092 81 ARQDKKHRGREPISARLVADLLKTAGADRIMTVDLHTDQIQGFFDGPVDHLFAMPLLADYIRSNYDLDNMTVVSPDAGRV 160 (304)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCHH
T ss_conf 05877778877522999999886148881799657759997416788743111799999998518876618980697468
Q ss_pred HHHHHHHHHCC-CCEEEEECCCCC--CCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 78999999709-979998326767--632100002454557428995213203366888989875268752178720555
Q gi|254780409|r 172 VRARALAKRLG-CLLAIVDKRREH--PGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGV 248 (310)
Q Consensus 172 ~ra~~~a~~L~-~~~~~~~K~R~~--~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgi 248 (310)
+||+.+|+.|| .++++++|+|+. +++++...++|||+||+|||||||||||||+++|++.||++||++|+++||||+
T Consensus 161 ~ra~~~a~~Lg~~~~~~~~K~R~~~~~~~v~~~~~~gdV~Gr~viIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THgl 240 (304)
T PRK03092 161 RVAEKWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVEALKEAGAKDVIIAATHGV 240 (304)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 99999999867997899970246787753761444567678759997764543735999999998669983999997934
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 57168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 249 LSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 249 fs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
|+++|+++|+++++++||+|||+|+++. ++++|++++|+||+||++|+|+|+++|+|+|||
T Consensus 241 fs~~A~~rl~~s~i~~iv~TnTip~~~~-~~~~ki~~~sva~llAeaI~ri~~~~Sis~Lf~ 301 (304)
T PRK03092 241 LSDPAAERLKNCGAREVVVTNTLPIPEE-KRFDKLTVLSIAPLLARAIREVFEDGSVTSLFD 301 (304)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 5967999997389987998188038620-068982999819999999999866997899729
No 18
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=0 Score=670.12 Aligned_cols=289 Identities=28% Similarity=0.431 Sum_probs=275.5
Q ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 89976899999999999958910444899869970788856786897089985978880467999999999998617200
Q gi|254780409|r 2 KIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARR 81 (310)
Q Consensus 2 ~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~ 81 (310)
.||+||+|++||++||++||++++++++++|||||.++|+.++|||+||||+||++.| ||+|||||++++|||++||++
T Consensus 4 ~ifsgss~~~LA~~iA~~Lg~~l~~~~~~~F~DGE~~v~i~e~vrg~dV~iiqs~~~p-nd~lmELll~idA~r~a~A~~ 82 (301)
T PRK07199 4 LLLALPGNAAAAGRLAAALGVEVGRITLHRFPDGESYVRLDSGVAGRTVVLVCSLDQP-DEKLLPLLFAAEAARELGARR 82 (301)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHCCCCE
T ss_conf 8996799999999999996997051289987999889961798779838998899997-388999999999998748874
Q ss_pred HHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCC---CHHHHHHCCCCCEECCHHHHHHHHHHHHCCC
Q ss_conf 1131023301103431125652147776520000267726995158---3577652588620001037777876530585
Q gi|254780409|r 82 ITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLH---AGQVQGFFDIPTDNLYALPILERDIKERNDI 158 (310)
Q Consensus 82 it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH---~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~ 158 (310)
||+|+|||||+||||++++|||+|+|++|+||+ +|+|+|+|+|+| .+|+|+||++|++|+++.+++++|++++ .
T Consensus 83 It~ViPY~~YaRQDr~~~~ge~isak~vA~ll~-~~~d~vitvDlH~h~~~~i~~ff~ip~~nl~~~~~l~~~i~~~--~ 159 (301)
T PRK07199 83 VVLVAPYLAYMRQDIRFHPGEAISSRHFARLLS-GSFDRLITVDPHLHRYHSLSEVYPIPARVLHAAPAIAAWIRAH--V 159 (301)
T ss_pred EEEEECCCCHHCCCCCCCCCCCCCHHHHHHHHH-HHCCEEEEECCCCCCHHHHCCCCCCCCEEEEECHHHHHHHHHH--C
T ss_conf 899815662101322347998510899999998-5277689970453226775267789817767058789999851--8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEE-CCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 5518851665635789999997099799983267676321000-024545574289952132033668889898752687
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVM-NIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~-~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA 237 (310)
++++|||||.||.+||+.+|+.||+++++++|+|..++++++. ..+|+|+||+|||||||||||||+++|++.||++||
T Consensus 160 ~~~vvVsPD~G~~~ra~~~a~~lg~~~~~~~K~R~~~~~v~i~~~~~~~v~gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA 239 (301)
T PRK07199 160 PKPLLIGPDSESEQWVSAVAGRAGAPHAVLRKTRHGDRDVEISLPDLSAWAGRTPVLVDDIVSTGRTLIEAARQLLAAGA 239 (301)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCHHHCHHHHHHHHHHHHHCCC
T ss_conf 77536788877799999999865998799998865898633744655455899547866422143779999999998699
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCC
Q ss_conf 52178720555571689888636998999817887843474079859981179999999987188
Q gi|254780409|r 238 LSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEE 302 (310)
Q Consensus 238 ~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~ 302 (310)
++||++||||+|+++|++||++|++++|++|||||++. +.+||||+|||+|+||+..
T Consensus 240 ~~V~~~aTHgvfs~~A~~~i~~s~i~~ivvTnTip~~~--------~~isva~llAeaI~ri~~~ 296 (301)
T PRK07199 240 ASPVCVGVHALFAPDAYSALLAAGAARVVSTDTVPHPT--------NAISLAPLLAEALRDLFGA 296 (301)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCC--------CEEEHHHHHHHHHHHHHCC
T ss_conf 85899997864785699999848998899828846898--------7455899999999998679
No 19
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=0 Score=666.22 Aligned_cols=286 Identities=33% Similarity=0.621 Sum_probs=274.6
Q ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 89976899999999999958910444899869970788856786897089985978880467999999999998617200
Q gi|254780409|r 2 KIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARR 81 (310)
Q Consensus 2 ~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~ 81 (310)
.||+||+|++||++||++||++++++++++|||||+++|++++|||+||||+|++ +|+||+|||||+|++|||++||++
T Consensus 1 ~i~sgss~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~i~~~~-~~~nd~lmELll~i~A~r~a~A~~ 79 (286)
T PRK00934 1 MIIGGSGSQNLAAEVAKLLNSELARVETKKFPDGELYVRVDEELGGEDIVIISTQ-YPQDENLIELILLLDALRDEGVKS 79 (286)
T ss_pred CEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 9885889899999999986997141288988999889986887799869999189-998479999999999998758973
Q ss_pred HHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCE
Q ss_conf 11310233011034311256521477765200002677269951583577652588620001037777876530585551
Q gi|254780409|r 82 ITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNL 161 (310)
Q Consensus 82 it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~ 161 (310)
||+|+|||||+||||++++|||+|+|++|+||+++ +|+|+|+|+|++|+||||++|++||++.+++++|++++ ..++
T Consensus 80 It~ViPY~~YsRQDr~~~~ge~isak~va~ll~~~-~d~vitvDlH~~~i~~fF~~p~~nl~~~~~~~~~~~~~--~~~~ 156 (286)
T PRK00934 80 ITLVAPYLAYARQDRRFKEGEPISIKALAKVYSSY-YDEIITINIHEEHTLEFFDIPFTNLSAMPAIAEYIKEK--LVDP 156 (286)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEECCHHHHHHCCCCCCCCCCCCHHHHHHHHHH--CCCC
T ss_conf 89983465533464346899865089999999753-17469994788788404689831110571458999843--8887
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 88516656357899999970997999832676763210000245455742899521320336688898987526875217
Q gi|254780409|r 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241 (310)
Q Consensus 162 vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~ 241 (310)
+|||||.|+.+||+.+|+.||+++++++|+|.+++++++....|||+||+||||||||||||||++|++.||++||++||
T Consensus 157 vVVsPD~G~~~ra~~~a~~Lg~~~~~~~K~R~~~~~v~~~~~~~dV~Gr~~IIvDDiidTGgTl~~aa~~Lk~~GA~~V~ 236 (286)
T PRK00934 157 LVLAPDKGALERAKEVAEILGCEYDYLEKKRISPTEVEMKPKDLDVKGKDVLIVDDIISTGGTMAKAISILKEQGAKKIY 236 (286)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEE
T ss_conf 89847974899999999975364658997438998523623532225878999656221538899999999986998699
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 8720555571689888636998999817887843474079859981179999999987
Q gi|254780409|r 242 AYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 242 ~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
++||||+|+++|++||+++++++|++|||+|+ |++++||||+||++|+|.
T Consensus 237 ~~~THglfs~~A~~rl~~s~i~~ivvTnTip~--------~~~~isva~llAeairr~ 286 (286)
T PRK00934 237 VSCVHPVLVEDAINKIHSAGADELAVTNTIPS--------EVSKISVSPIIADLLNKE 286 (286)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCCCCC--------CCCEEEHHHHHHHHHCCC
T ss_conf 99979007805999997489988998588899--------887878189999997479
No 20
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=0 Score=666.58 Aligned_cols=308 Identities=28% Similarity=0.449 Sum_probs=283.1
Q ss_pred CEEEECCCCHHHHHHHHHHHC----------------------CCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCC
Q ss_conf 989976899999999999958----------------------9104448998699707888567868970899859788
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLH----------------------TSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSC 58 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg----------------------~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~ 58 (310)
+.|++..+..+|++++-+++- .=+.++++.||+|||.+++|.|+|||+|+||+|++|.
T Consensus 9 l~ii~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~rF~~GE~k~~i~esVRG~D~fi~~d~~n 88 (381)
T PRK06827 9 LGIIALESCTELGNAIDEDIIKKRKFLSPFLEGLSFSNLDFEESFLIPVQFIRFSNGEGKVEILETIRGKDIFILQDVGN 88 (381)
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCEECCCEEEEEECCCCCCCCEEEEEECCC
T ss_conf 52778133899999999999998750340102443114655554577346534448725898714313772799973477
Q ss_pred --------------CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEE
Q ss_conf --------------804679999999999986172001131023301103431125652147776520000267726995
Q gi|254780409|r 59 --------------PANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIML 124 (310)
Q Consensus 59 --------------~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~ 124 (310)
++||++|||++|+|||||++|+|||+|||||||||||||. +|||||||++|+||+++|+|||+|+
T Consensus 89 ~s~ty~~~g~~~~~spND~lmELlimIdA~kraSA~rItaViPy~gYaRQDrk~-~RepItAkLvA~lL~~aGvdrviT~ 167 (381)
T PRK06827 89 YSVTYNMFGEKNHKGPDDHFQDLKRTIDAIRQAKANRITVIMPLLYYSRQHKRK-GRESLDCALALQELEELGVDHILTF 167 (381)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 740340357547689772899999999874343587489985688131257777-8887479999999997199969997
Q ss_pred CCCCHHHHHHCCC-CCEECCHHHHHHHHHHHHC-----CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCC--
Q ss_conf 1583577652588-6200010377778765305-----8555188516656357899999970997999832676763--
Q gi|254780409|r 125 DLHAGQVQGFFDI-PTDNLYALPILERDIKERN-----DISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPG-- 196 (310)
Q Consensus 125 DlH~~~~~~~F~i-p~~nl~~~~~l~~~l~~~~-----~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~-- 196 (310)
|+|++|+||||++ |+|||++.+.+.+|+.++. +.++++|||||.||++||+.||+.||+++++++|+|+.+.
T Consensus 168 DLHa~qIQgfF~i~pvDnl~~~~~~~~~l~~~~~~~~~~~~~~vVVSPD~Ggv~RA~~~A~~L~~~laii~KrR~~s~v~ 247 (381)
T PRK06827 168 DIHDPNIQNAIPLMSFENLYPSYEIVKSLLENEKLLELDKENLVVISPDTGAMDRAKYYSSVLKVPLGLFYKRRDYSTVV 247 (381)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 57872247787788754677538999999984531236867777992699738999999997198989999764676445
Q ss_pred ----CCEEECCCC-CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH----HCCCCEEEE
Q ss_conf ----210000245-45574289952132033668889898752687521787205555716898886----369989998
Q gi|254780409|r 197 ----KIEVMNIIG-KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIE----KSKMKELVI 267 (310)
Q Consensus 197 ----~v~~~~~~g-dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~----~s~i~~iv~ 267 (310)
.+..+..+| ||+||+|||+||||||||||++||+.||++||++||+++|||+|| +|.++++ ++.++++++
T Consensus 248 ~~~n~i~~~~~lggdV~GK~~IIvDDmIdTggTl~~aA~~Lk~~GA~~V~a~aTHgvfS-~a~e~~~~~~e~~~i~~vvv 326 (381)
T PRK06827 248 NGKNPIVVHELLGRDVEGKDVFIVDDMIASGGSVLDAAKELKSRGAKKIICAVSFPFFT-EGLEKFDKAYEEGYIYRIIG 326 (381)
T ss_pred CCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHCC-CHHHHHHHHHHCCCCCEEEE
T ss_conf 66784367524135567988999724314526899999999987998899999736604-76999976454288648997
Q ss_pred CCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 1788784347407985998117999999998718887313009
Q gi|254780409|r 268 TDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 268 TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
|||+|+++..++++|++++|+||+||++|+|+|+++|||+|||
T Consensus 327 TNti~~~~~l~~~~ki~vlsva~llAeaI~rIh~~~SIS~Lfd 369 (381)
T PRK06827 327 TNLVYHPEELKSKPWYTEADVSELFARIIFRLNHDVSLSKILD 369 (381)
T ss_pred CCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 7999899678158983998869999999999867995899749
No 21
>PRK01132 consensus
Probab=100.00 E-value=0 Score=651.92 Aligned_cols=284 Identities=26% Similarity=0.466 Sum_probs=271.4
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+||+||+|++||++||++||++++++++++|||||.++|++++|||+|||++||+++ |+++||||++++|||++||+
T Consensus 1 m~i~sgss~~~LA~~ia~~Lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iv~s~~~--n~~lmELll~idAlr~~~A~ 78 (286)
T PRK01132 1 MKIIPLSSSMKLASSLAEKLNAEIVNPTERRFPDGELYVRYDTDLKGRDVFIIGNTHH--DAELIEMILLLSAAYDYKPK 78 (286)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEECEEEEECCCCCEEEEECCCCCCCEEEEECCCCC--CHHHHHHHHHHHHHHHCCCC
T ss_conf 9799678889999999999699703418898899978998378768987999888999--77699999999999874887
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCC
Q ss_conf 01131023301103431125652147776520000267726995158357765258862000103777787653058555
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISN 160 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~ 160 (310)
|||+|+|||||+||||++++|||+|+|++|+||+++| |+|+|+|+|++|+|+||++|++|+++.+++++|++.. +.
T Consensus 79 rIt~ViPY~~YsRQDr~~~~ge~isak~vA~ll~~~~-d~vitvDlH~~~i~~ff~ip~~nl~a~~~l~~~~~~~---~~ 154 (286)
T PRK01132 79 SVNIIAPYYGYARQHQRYNPGEPISSQIFTEIIESYS-DSIATVDIHDEETLSYSKVPFTDLHAYDSIADYYKNV---DI 154 (286)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CEEEEEECCHHHHHCCCCCCCCCCCCHHHHHHHHHHC---CC
T ss_conf 2799824654233232358989630999999987416-6699982460565402689745654008999998733---85
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++|||||.|+.+||+.+|+.||+++++++|+|..+++++.....|||+||+||||||||||||||++|++.||++||++|
T Consensus 155 ~vVVsPD~G~~~rA~~~A~~Lg~~~~~~~K~R~~~~~v~~~~~~~dV~gk~~IIVDDiidTGgTl~~aa~~Lk~~GA~~V 234 (286)
T PRK01132 155 DYVVSPDDGGLERVKSIAKYLGKKAFYIEKKRIDDRTVEMKMPDIDSNGKKILIVDDIISTGGTIAKSSRILRDKGASKI 234 (286)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCEEEEEEEEEECHHHCHHHHHHHHHHHHHCCCCEE
T ss_conf 61257985288999999998199869997555699851351211214641599981502123899999999998799849
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 78720555571689888636998999817887843474079859981179999999987
Q gi|254780409|r 241 TAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 241 ~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
+++||||+|+++|++||.+ ++++|++|||||+. ...+||+|++|++|++-
T Consensus 235 ~a~~THglfs~~A~~ri~~-~~~~iv~TdTi~~~--------~s~isva~~ia~~l~~~ 284 (286)
T PRK01132 235 YVSAVHGLFVNNSEAKILE-NADEIHVTDTVETK--------FSDISVYQDVCNYIEKK 284 (286)
T ss_pred EEEEECCCCCHHHHHHHHH-CCCEEEECCCCCCC--------CCEEEEHHHHHHHHHHH
T ss_conf 9999682067169999880-69989991897798--------87046679999999875
No 22
>PRK03675 consensus
Probab=100.00 E-value=0 Score=640.45 Aligned_cols=277 Identities=30% Similarity=0.521 Sum_probs=264.7
Q ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 89976899999999999958910444899869970788856786897089985978880467999999999998617200
Q gi|254780409|r 2 KIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARR 81 (310)
Q Consensus 2 ~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~ 81 (310)
.+|+||+|++||++||++ .+++++++++|||||.++|+++ ||+|||||||+++|+||+|||||+|++|||++||++
T Consensus 1 ~~~~Gs~~~~La~~ia~~--~~l~~~e~~~FpDGE~~vri~e--~g~dv~iiqs~~~p~nd~lmELll~~dAlr~a~A~~ 76 (279)
T PRK03675 1 MFVIGSGAKHLEEEISNA--GKILNVEIKKFPDGEKYVRVLE--NGDEAIVVQSTYYPQDEKLIEALLLGDALREAGFEK 76 (279)
T ss_pred CEEECCCCHHHHHHHHHC--CCEEEEEEEECCCCCEEEEECC--CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 977558998999999811--9822037898899988998657--898289987899997367999999999999827872
Q ss_pred HHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCE
Q ss_conf 11310233011034311256521477765200002677269951583577652588620001037777876530585551
Q gi|254780409|r 82 ITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNL 161 (310)
Q Consensus 82 it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~ 161 (310)
||+|+|||||+||||++++|||+|+|++|+||+ +|+|+|+|+|+|++|+|+||++|++|+++.+.+++|++++ ..++
T Consensus 77 It~ViPY~~YaRQDr~~~~gepisak~va~ll~-~~~d~vitvDlH~~~i~~fF~~pv~~l~~~~~~~~~~~~~--~~~~ 153 (279)
T PRK03675 77 LKLVVPYLAYSRQDRVTKEGEPISVRAVMKMLG-LYYDELYVFDIHNPKTLEFFPGKAVNIYPAKVIAEYFRDK--LGEG 153 (279)
T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHH--CCCC
T ss_conf 799934675232242247998614999999975-2127699982685777645799602201648889999850--8986
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 88516656357899999970997999832676763210000245455742899521320336688898987526875217
Q gi|254780409|r 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVT 241 (310)
Q Consensus 162 vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~ 241 (310)
+|||||.|+.+||+.+|+.||+++++++|+|.++++++...+.|||+||+||||||||||||||++|++.|+++||++||
T Consensus 154 vVVsPD~G~~~ra~~~A~~lg~~~~~~~K~R~~~~~v~~~~~~~dV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~ 233 (279)
T PRK03675 154 LVLAPDKGALERAKAVAEVLGLEYSHFEKERISPTEVEMTPVDVDVKGKNVLIVDDIISTGGTMIRAAEILRKLGAKKIF 233 (279)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 89978988899999999861786578873267898216525555547967999745102527899999999976998699
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHH
Q ss_conf 87205555716898886369989998178878434740798599811799999
Q gi|254780409|r 242 AYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGE 294 (310)
Q Consensus 242 ~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~ 294 (310)
++||||+|+++|+++|.++ +++|++|||||++... +|++|.||+
T Consensus 234 ~~aTHglfs~~A~~~l~~~-i~~ivvTnTIp~p~~k--------isvap~i~~ 277 (279)
T PRK03675 234 VVATHGVFAEGAIERVSKA-VDELAVTNTIPTPVSK--------ISIVPEILK 277 (279)
T ss_pred EEEECCCCCCHHHHHHHHH-CCEEEEECCCCCCHHH--------CCCCCHHEE
T ss_conf 9997810680699999974-8899992886787001--------202511121
No 23
>KOG1448 consensus
Probab=100.00 E-value=0 Score=640.31 Aligned_cols=309 Identities=50% Similarity=0.776 Sum_probs=301.4
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
+++|+|++|++||++||++||++++++.+++|+|||+++++.|+|||+|||++||+++|+||+|||||.|++|||+++|+
T Consensus 4 i~lf~g~shp~La~~I~~~l~i~l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~ 83 (316)
T KOG1448 4 IKLFSGDSHPELAERIAARLGIELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASAS 83 (316)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 69971889879999999985998201356883688577853533155737996258886107899999999865055321
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHH-CCCC
Q ss_conf 011310233011034311256521477765200002677269951583577652588620001037777876530-5855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKER-NDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~-~~~~ 159 (310)
+||+|+|||||+||||+.+.+.+++||++|+||+.+|+|++||+|+|.+|+||||++|++|+++.|.+..|++++ .+++
T Consensus 84 ~vTaViP~Fpyarq~~k~~~ra~i~aklVanlls~aG~dhvIt~DlHa~Q~qgfF~ipVdnly~~p~~l~~ir~~~~~~~ 163 (316)
T KOG1448 84 RVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPDSE 163 (316)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCHHHCCCHHHHHHHHHHCCCCC
T ss_conf 16784367755553000001466899999850200589659982465342075240202110256388899986188745
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCE-EECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 5188516656357899999970997999832676763210-000245455742899521320336688898987526875
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIE-VMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL 238 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~-~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~ 238 (310)
+.++||||+||.||++.+|+.|+..|+.++|.|.+.+++. .+.++|||+||.|||||||+||+||++++++.|.++||+
T Consensus 164 ~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~~v~~~m~LVGDv~gkvaIlVDDm~dt~GTl~~aa~~L~~~GA~ 243 (316)
T KOG1448 164 NAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAK 243 (316)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 31898788645566677777521155533014200455425899985367868999436411364199999999865874
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 217872055557168988863699899981788784347407985998117999999998718887313009
Q gi|254780409|r 239 SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 239 ~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
+||+++|||+|+++|+||+..+.++++++|||+|+.+.... +|+.++|++|.+|++|+|+|+|+|+|.||.
T Consensus 244 kV~a~~THgVfs~~a~er~~~s~~~~~vvtnt~p~~~~~~~-~~~~~Idvs~~~ae~irr~h~gesvS~lf~ 314 (316)
T KOG1448 244 KVYAIVTHGVFSGPAIERLNESALDRVVVTNTIPIDDSCLE-PKLTTIDVSPVLAEAIRRTHNGESVSYLFS 314 (316)
T ss_pred EEEEEECCEECCCCHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCCEEEECCCCCHHEEEECCCEEEEEECC
T ss_conf 59999713222631887734404340799974245644467-866377421456031687518815441124
No 24
>KOG1503 consensus
Probab=100.00 E-value=0 Score=484.24 Aligned_cols=309 Identities=38% Similarity=0.586 Sum_probs=291.1
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999999999861720
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|.+|+|+|+++||+.++++||++++++.+-+-+|+|+.++|.+||||+||||+|+...++|.++||||.|+.|||.+.|+
T Consensus 9 ~vl~s~ns~~elak~vaerlgi~~g~~~vy~~tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~ak 88 (354)
T KOG1503 9 MVLFSGNSHPELAKMVAERLGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSCAK 88 (354)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 59991899889999999985300264378853787258873340457527999736754123799999999998643112
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHH-CCCC
Q ss_conf 011310233011034311256521477765200002677269951583577652588620001037777876530-5855
Q gi|254780409|r 81 RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKER-NDIS 159 (310)
Q Consensus 81 ~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~-~~~~ 159 (310)
+|+.|+||||||.|.|.. .|.+|-.|++|.|+-.+|..+++|+|+|...+||||++|+|||-+.|.|.+|+++. .+++
T Consensus 89 siigvipy~pyskqckmr-krgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiqe~ipdyr 167 (354)
T KOG1503 89 SIIGVIPYLPYSKQCKMR-KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQEEIPDYR 167 (354)
T ss_pred CEEEEEECCCCCHHHHHH-HCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 038984057631566455-3142899999999875262017853003676365312633123147789999987586521
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC-----------CC-C------------------CEEECCCCCCCC
Q ss_conf 51885166563578999999709979998326767-----------63-2------------------100002454557
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREH-----------PG-K------------------IEVMNIIGKVEG 209 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~-----------~~-~------------------v~~~~~~gdV~g 209 (310)
|.++|+-..|..++|+.+|++|...+++++-+... +- . -....++|||-|
T Consensus 168 navivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvvgdvgg 247 (354)
T KOG1503 168 NAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVVGDVGG 247 (354)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCC
T ss_conf 31799628216667776999874131476434335312443577597974334447654571443256998379822686
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECH
Q ss_conf 42899521320336688898987526875217872055557168988863699899981788784347407985998117
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIA 289 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva 289 (310)
|-.|+|||+||--.+++.|++.||+.||-++|+.+|||++|.+|..+|+.|+++++++|||+|++-+.-+|+|++.+|++
T Consensus 248 riaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~idevvvtntvphevqklqc~kiktvdis 327 (354)
T KOG1503 248 RIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPIDEVVVTNTVPHEVQKLQCHKIKTVDIS 327 (354)
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCEEEHH
T ss_conf 58998533577699999999999855855899986045345665234411887459984578478886037753255324
Q ss_pred HHHHHHHHHHHCCCCCCHHCC
Q ss_conf 999999998718887313009
Q gi|254780409|r 290 QLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 290 ~llA~aI~~i~~~~Svs~l~~ 310 (310)
-+++|||+|||++||.|.||-
T Consensus 328 lii~eairrihn~esm~ylfr 348 (354)
T KOG1503 328 LIISEAIRRIHNGESMSYLFR 348 (354)
T ss_pred HHHHHHHHHHHCCCHHHHHHH
T ss_conf 689999999867740888975
No 25
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase; InterPro: IPR005946 Synonyms: phosphoribosylpyrophosphate synthetase Phosphoribosyldiphosphate synthetase (PRPPsase, 2.7.6.1 from EC) catalyzes the transfer of an intact diphosphate (PP) group from ATP to ribose-5-phosphate (R-5-P), which results in the formation of AMP and 5-phospho-D-ribosyl--1-diphosphate (PRPP). ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate PRPP is an essential precursor for purine and pyrimidine nucleotides, both in the de novo synthesis and in the salvage pathway as well as in the synthesis of pyridine nucleotide coenzymes. The activity of PRPPsase is highly regulated. Besides competitive inhibition at the substrate binding sites, most PRPPsases are regulated in an allosteric manner, in which ADP generally acts as the most potent inhibitor. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions.; GO: 0000287 magnesium ion binding, 0004749 ribose phosphate diphosphokinase activity, 0009165 nucleotide biosynthetic process.
Probab=100.00 E-value=0 Score=479.28 Aligned_cols=309 Identities=52% Similarity=0.845 Sum_probs=301.3
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 98997689999999999995891044489986997078885678689708998-59788804679999999999986172
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIV-QSTSCPANDYLMELLIMIDAVRRSSA 79 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~iv-qs~~~~~nd~lmeLl~~~~a~k~~~A 79 (310)
|++|+|++++.|+.++++.++.++++...++|||||.++++.++++|++++++ |+++.|+|+++||+++++++++++++
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~ge~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 80 (316)
T TIGR01251 1 LKIFSGSSNPELAEKVAKLLGLPLGDAEVKRFPDGELYVRIDESVRGGDVFIIVQSTCPPVNDNLMELLLLIDALKRAGA 80 (316)
T ss_pred CEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 93540566525799998642652110000111686237886014567515899606677620689999999987641365
Q ss_pred CHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCC
Q ss_conf 00113102330110343112565214777652000026772699515835776525886200010377778765305855
Q gi|254780409|r 80 RRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDIS 159 (310)
Q Consensus 80 ~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~ 159 (310)
+++++++|||+|+||||++.+|+|+++++++++++.+|+++++|+|+|++++++||++|++|+++.+.+.+|+++...++
T Consensus 81 ~~~~~~~p~~~y~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~h~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~ 160 (316)
T TIGR01251 81 KSITAVLPYYGYARQDRKFKGGEPISAKLVADLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKEKLPLD 160 (316)
T ss_pred CEEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 51578731343200000025666304889999986327432688504512221002341012211578888887532776
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEECCCC-CCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 51885166563578999999709-97999832676-76321000024545574289952132033668889898752687
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLG-CLLAIVDKRRE-HPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA 237 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~-~~~~~~~K~R~-~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA 237 (310)
++++++||.|++.|++.+++.++ +++++++|+|. .+++++.....||++||+++++||+++||||++++++.|++.||
T Consensus 161 ~~~~~~pd~g~~~~~~~~~~~~~~~~~~~~~k~r~~~~~~~~~~~~~~~~~g~~~~~~dd~~~~gg~~~~~~~~l~~~g~ 240 (316)
T TIGR01251 161 DPVVVSPDKGGVERAKSVADALGDLPLALIDKRRPSAPNEVEVLPLLGDVEGKDVVLVDDIIDTGGTLVKAAELLKEKGA 240 (316)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 64686067323678889997606764233331136764323543100023675278860210021358999999863484
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCC----CCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCHHCC
Q ss_conf 521787205555716898886369----9899981788784347407985998117999999998718887313009
Q gi|254780409|r 238 LSVTAYITHGVLSSSSIERIEKSK----MKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERSISSLFD 310 (310)
Q Consensus 238 ~~V~~~~THgifs~~a~e~l~~s~----i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~Svs~l~~ 310 (310)
++|++++|||+|++++.+++..++ ++++++|||++..+. +..++++.++++|+++++|.++|++.|++.+|+
T Consensus 241 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (316)
T TIGR01251 241 KKVYAAATHGVFSGPALERLANAGEEGLVEEVVVTDTIPLPEE-KHLPKVSVLSVAPLIAEAIRRIHNGESVSSLFD 316 (316)
T ss_pred CEEEEEEECCHHCCHHHHHHHHCCCCCHHHHHEECCCCCCCCC-CCCCCCEEHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 4278765122002146888651111000111100022125420-014531000257789999987631332011039
No 26
>pfam00156 Pribosyltran Phosphoribosyl transferase domain. This family includes a range of diverse phosphoribosyl transferase enzymes. This family includes: Adenine phosphoribosyltransferase EC:2.4.2.7. Hypoxanthine-guanine-xanthine phosphoribosyltransferase. Hypoxanthine phosphoribosyltransferase EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyltransferase EC:2.4.2.10. Uracil phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At the very N-terminus of this domain is the ATP-GTP-binding domain.
Probab=99.35 E-value=1.2e-11 Score=97.63 Aligned_cols=102 Identities=32% Similarity=0.462 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC---------CCCEEECCCCCCCCCEEEE
Q ss_conf 0377778765305855518851665635789999997099799983267676---------3210000245455742899
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHP---------GKIEVMNIIGKVEGKDCIL 214 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~---------~~v~~~~~~gdV~gr~vII 214 (310)
....+++.+.+. ..+..+|++|..||..+|..++..|+.|+.+..+.+... ..........+++||+|+|
T Consensus 13 ~~~~la~~i~~~-~~~~d~ivgi~~gG~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vli 91 (123)
T pfam00156 13 LIEALAEKIREE-GIDPDVIVGIARGGIPLATALARELGIPLVLVRKRISLPSSIKSRGGESVTLLSRLPELLKGKRVLI 91 (123)
T ss_pred HHHHHHHHHHHH-CCCCCEEEECHHCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCEEEEECCCCCCCCCEEEE
T ss_conf 999999999986-8999999991118698999999986999489998876377660551772699842432369999999
Q ss_pred ECHHHCCHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 52132033668889898752687521787205
Q gi|254780409|r 215 IDDIVDTGGTLCGAADALYEQGALSVTAYITH 246 (310)
Q Consensus 215 VDDii~TGgTi~~aa~~Lk~~GA~~V~~~~TH 246 (310)
|||+++||+|+.++.+.|++.||+.|.+++.+
T Consensus 92 VDDv~~tG~Tl~~~~~~l~~~g~~~v~~~vli 123 (123)
T pfam00156 92 VDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV 123 (123)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 84876843899999999994799099999989
No 27
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.31 E-value=5.4e-11 Score=93.30 Aligned_cols=130 Identities=25% Similarity=0.348 Sum_probs=104.3
Q ss_pred ECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC-C-------------CCCE-------
Q ss_conf 001037777876530585551885166563578999999709979998326767-6-------------3210-------
Q gi|254780409|r 141 NLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREH-P-------------GKIE------- 199 (310)
Q Consensus 141 nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~-~-------------~~v~------- 199 (310)
-=++...|++.|....+..+++|.+.--||+.-+..+|+.||+++.++--++.. + +.+.
T Consensus 7 R~dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~ 86 (220)
T COG1926 7 RTDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVR 86 (220)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHCEEEECCCCCEECCHHHHH
T ss_conf 88999999999985333798379974688716799999986997369999634899982230366526996751066666
Q ss_pred ----------------------------EECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
Q ss_conf ----------------------------0002454557428995213203366888989875268752178720555571
Q gi|254780409|r 200 ----------------------------VMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS 251 (310)
Q Consensus 200 ----------------------------~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~ 251 (310)
.....-+.+||+||||||-|.||.||..|++.+|.+|+++|++++ |+++.
T Consensus 87 ~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV--PV~p~ 164 (220)
T COG1926 87 SLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV--PVAPE 164 (220)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCCH
T ss_conf 3468999999999999999999999972889987888898999707721207799999999862886089984--45978
Q ss_pred HHHHHHHHCCCCEEEECCCCCC
Q ss_conf 6898886369989998178878
Q gi|254780409|r 252 SSIERIEKSKMKELVITDSIQP 273 (310)
Q Consensus 252 ~a~e~l~~s~i~~iv~TnTi~~ 273 (310)
++.+.|. +..++++|-.+=.+
T Consensus 165 ~a~~~l~-s~~D~vvc~~~P~~ 185 (220)
T COG1926 165 DAAAELE-SEADEVVCLYMPAP 185 (220)
T ss_pred HHHHHHH-HHCCEEEEECCCCC
T ss_conf 9999998-54675999827854
No 28
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.26 E-value=3.5e-11 Score=94.52 Aligned_cols=101 Identities=24% Similarity=0.363 Sum_probs=80.2
Q ss_pred HHHHHHHHHH-HCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC----CCCCEEECCCCCCCCCEEEEECHHH
Q ss_conf 3777787653-0585551885166563578999999709979998326767----6321000024545574289952132
Q gi|254780409|r 145 LPILERDIKE-RNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREH----PGKIEVMNIIGKVEGKDCILIDDIV 219 (310)
Q Consensus 145 ~~~l~~~l~~-~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~----~~~v~~~~~~gdV~gr~vIIVDDii 219 (310)
...+++-+.+ ..+.+-.+||+|-..|+++|+.+|..|+.++++.+..++. ....+.....++|+||+|+||||++
T Consensus 72 a~~maD~~~e~~~~~evD~vvGIa~~GIPlAt~vA~~l~~~l~iy~P~k~~~~e~~~~G~~s~nfa~V~Gk~VlIVDDVi 151 (201)
T PRK02277 72 ALAMADMLLLNKEGVEVDVVVGIAISGVPLATLMADELGKDLAIYHPKKHQHDEGKKTGSISRNFASVAGKRCVIVDDVI 151 (201)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 99999999875337876479875236841899999985276115613555666678776213410343787899997023
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 03366888989875268752178720
Q gi|254780409|r 220 DTGGTLCGAADALYEQGALSVTAYIT 245 (310)
Q Consensus 220 ~TGgTi~~aa~~Lk~~GA~~V~~~~T 245 (310)
+||+|+.++.+.++++||+.|-+++-
T Consensus 152 TTG~T~~e~ie~l~~~Ga~vv~~~Vl 177 (201)
T PRK02277 152 TSGNTMKETIEYLKEHGAKPVAVVVL 177 (201)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 77824999999999869979999999
No 29
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.21 E-value=1.5e-10 Score=90.35 Aligned_cols=101 Identities=23% Similarity=0.351 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCC--EEEEECCCC-----CCCCCEEE-CCCCCCCCCEEEEE
Q ss_conf 03777787653058555188516656357899999970997--999832676-----76321000-02454557428995
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCL--LAIVDKRRE-----HPGKIEVM-NIIGKVEGKDCILI 215 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~--~~~~~K~R~-----~~~~v~~~-~~~gdV~gr~vIIV 215 (310)
....+++++.+.+..+++++|+.-.|+..++..+.+.++.+ +.+++-.+- +++.+.+. .+..+++||+|+||
T Consensus 20 ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~~~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiV 99 (178)
T COG0634 20 RIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIV 99 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEE
T ss_conf 99999999977627996199997466453099999855998416789974047876347716885356667789849998
Q ss_pred CHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 21320336688898987526875217872
Q gi|254780409|r 216 DDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 216 DDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
|||+|||.|+....+.|+.+||+++..++
T Consensus 100 eDIiDsG~TLs~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 100 EDIIDSGLTLSKVRDLLKERGAKSVRIAT 128 (178)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 52103675599999999756997689999
No 30
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.20 E-value=4.9e-10 Score=86.93 Aligned_cols=150 Identities=17% Similarity=0.246 Sum_probs=100.8
Q ss_pred HHEECCCCEEEEECCCCHHHHH-HCCCCCEECCH--HHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 0000267726995158357765-25886200010--37777876530-58555188516656357899999970997999
Q gi|254780409|r 112 LITQAGADRVIMLDLHAGQVQG-FFDIPTDNLYA--LPILERDIKER-NDISNLMVVSPDVGGVVRARALAKRLGCLLAI 187 (310)
Q Consensus 112 ll~~~G~d~vit~DlH~~~~~~-~F~ip~~nl~~--~~~l~~~l~~~-~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~ 187 (310)
+|-..|+=+.=.+-+-|...-. |||...-..++ ..++++.+.+. .+.+..++++|..||++.|..++..++.|+.+
T Consensus 16 ~L~e~ga~kfG~FtL~SG~kSp~Y~D~r~~~s~P~~~~~i~~~~~~~~~~~~~d~i~Gv~~ggip~A~~ia~~~~~P~~~ 95 (206)
T PRK13809 16 ILYQIGAIKFGKHILASGEETPLYVDMRLVISSPEVLQTVATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVL 95 (206)
T ss_pred HHHHCCCEEECCEEECCCCCCCEEEECEECCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99986998969878787887899787952306999999999999998625586789843133899999999860998388
Q ss_pred EECCCCCCCCCEEECCCCCC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHCCCCE
Q ss_conf 83267676321000024545-5742899521320336688898987526875217872055557--16898886369989
Q gi|254780409|r 188 VDKRREHPGKIEVMNIIGKV-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLS--SSSIERIEKSKMKE 264 (310)
Q Consensus 188 ~~K~R~~~~~v~~~~~~gdV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs--~~a~e~l~~s~i~~ 264 (310)
..|+....+......+.|.. +|+.|++|||++.||||+.++++.|++.|+.-+.+++ ++. .++.|+|.+.++.-
T Consensus 96 vRke~K~~g~~~~i~iEG~~~~G~kVvvIEDViTTGgSil~ai~~lr~~G~~V~~v~v---ivDReegg~e~l~~~Gi~l 172 (206)
T PRK13809 96 RRKELQNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEENGLVVREALV---FLDRRKEACQPLGPQGIKV 172 (206)
T ss_pred EECCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEE---EEECCCCHHHHHHHCCCCE
T ss_conf 7445456786760253357789988999973344680099999999987996999999---9926516799999779918
No 31
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.18 E-value=2.6e-10 Score=88.80 Aligned_cols=106 Identities=24% Similarity=0.339 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCE--EEEECCC----CCCCCCEE-ECCCCCCCCCEEEEECH
Q ss_conf 37777876530585551885166563578999999709979--9983267----67632100-00245455742899521
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLL--AIVDKRR----EHPGKIEV-MNIIGKVEGKDCILIDD 217 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~--~~~~K~R----~~~~~v~~-~~~~gdV~gr~vIIVDD 217 (310)
...++..+.+.+..+++++++.=.||..++..+.+.|+.|+ .+++-.+ .+++++.. .....+++||+|+||||
T Consensus 26 I~~lA~~I~~~y~~~~~viI~vL~Ga~~F~adL~r~l~~~~~vdfi~~sSY~~~~ssg~v~~~~~~~~~i~gk~VLiVeD 105 (181)
T PRK09162 26 IDRMADEITADLADENPLVLCVMNGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDD 105 (181)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEE
T ss_conf 99999999998289984899995784999999998579983777778612489775784799735775668986999931
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH
Q ss_conf 320336688898987526875217872055557168
Q gi|254780409|r 218 IVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSS 253 (310)
Q Consensus 218 ii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a 253 (310)
|+|||.||..+.+.|++.||++|..|+ +|..+.
T Consensus 106 IvDTG~Tl~~l~~~l~~~gp~Svki~~---LldK~~ 138 (181)
T PRK09162 106 ILDEGHTLAAIRDWCLEMGAAEVYSAV---LVDKTH 138 (181)
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEEEE---EEECCC
T ss_conf 876279999999999704998899999---996561
No 32
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.15 E-value=6e-10 Score=86.35 Aligned_cols=149 Identities=22% Similarity=0.266 Sum_probs=100.4
Q ss_pred HHHHHHHEECCCCE----EEEECCCCHHHHHHCCCCCEECC--HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 77652000026772----69951583577652588620001--0377778765305855518851665635789999997
Q gi|254780409|r 107 KLVANLITQAGADR----VIMLDLHAGQVQGFFDIPTDNLY--ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180 (310)
Q Consensus 107 k~~a~ll~~~G~d~----vit~DlH~~~~~~~F~ip~~nl~--~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~ 180 (310)
+-++++|...|+=+ ..+--.||+ -||++.....+ ....++..+.++. +-.+|++|-.||++.|..+|..
T Consensus 3 ~~~~e~L~~~~al~~G~F~L~SG~~S~---~Y~d~~~~~~~P~~~~~i~~~l~~~~--~~d~I~G~a~ggipla~~va~~ 77 (170)
T PRK13811 3 NTIADLLISYKAIEFGDFTLASGAKST---YYIDIKTAITSPAILKEIAAEVAKSY--DFDAVAGVAVGGVPLAVAVSLA 77 (170)
T ss_pred HHHHHHHHHCCCEEECCEEECCCCCCC---EEECCCHHHCCHHHHHHHHHHHHCCC--CCCEEECCCHHHHHHHHHHHHH
T ss_conf 899999997899696968817647785---02549036649999999999985377--9889971410079999999998
Q ss_pred CCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 09979998326767632100002454557428995213203366888989875268752178720555571689888636
Q gi|254780409|r 181 LGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKS 260 (310)
Q Consensus 181 L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s 260 (310)
++.|+.++.|+....|. ...+.|+++|.+|+||||.+.||+++.++++.+++.|+.-+-++|---= .+++.|++.+.
T Consensus 78 ~~~p~~~vRke~K~~G~--~~~ieG~~~G~~VlvVEDViTTG~S~~e~i~~l~~~G~~V~~v~~ivDR-~eg~~e~l~~~ 154 (170)
T PRK13811 78 SDKPYAIIRKEQKDHGK--ASLIIGDVAGKRVLLVEDVTTSGGSALYGIEQLRSAGAVVDDVVTVVDR-EEGAEELLAEL 154 (170)
T ss_pred CCCCEEEEEECCCCCCC--CCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEC-CCCHHHHHHHC
T ss_conf 39987999974554134--5520123489989999964457811899999999889979999999977-74779999966
Q ss_pred CCC
Q ss_conf 998
Q gi|254780409|r 261 KMK 263 (310)
Q Consensus 261 ~i~ 263 (310)
++.
T Consensus 155 Gv~ 157 (170)
T PRK13811 155 DIT 157 (170)
T ss_pred CCE
T ss_conf 990
No 33
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.15 E-value=3.3e-10 Score=88.04 Aligned_cols=99 Identities=28% Similarity=0.415 Sum_probs=78.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC-----CEEECCCCCCCCCEEEEECHHHC
Q ss_conf 7777876530585551885166563578999999709979998326767632-----10000245455742899521320
Q gi|254780409|r 146 PILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGK-----IEVMNIIGKVEGKDCILIDDIVD 220 (310)
Q Consensus 146 ~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~-----v~~~~~~gdV~gr~vIIVDDii~ 220 (310)
..+++-+.+....+-.+||+.-..|++.|..+|..||++|++.+.+.....+ ...+...+.|+||+|+||||.++
T Consensus 73 ~am~Dm~m~~~~~evDvVvGIa~sGvPlAt~vA~elg~elaiY~PrK~~~de~~~~~G~iS~NFasV~gK~cvIVDDvit 152 (203)
T COG0856 73 EAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVIT 152 (203)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCC
T ss_conf 99988999860540468998850686289999997378469981356654335776762312321115754899832225
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 336688898987526875217872
Q gi|254780409|r 221 TGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 221 TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
||.|+.++.+.|++.|++.+.+.+
T Consensus 153 tG~Ti~E~Ie~l~e~g~kPv~v~V 176 (203)
T COG0856 153 TGSTIKETIEQLKEEGGKPVLVVV 176 (203)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 672199999999975997479999
No 34
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.14 E-value=1.1e-09 Score=84.72 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=101.9
Q ss_pred HHHHHHEECCCCE----EEEECCCCHHHHHHCCCCCEECC--HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 7652000026772----69951583577652588620001--03777787653058555188516656357899999970
Q gi|254780409|r 108 LVANLITQAGADR----VIMLDLHAGQVQGFFDIPTDNLY--ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL 181 (310)
Q Consensus 108 ~~a~ll~~~G~d~----vit~DlH~~~~~~~F~ip~~nl~--~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L 181 (310)
.+.++|...|+=. +.+-=.||+. ||+...-..+ ....+++.+.+... ++..+.+|..||++.+..+|..+
T Consensus 5 ~li~~l~e~~al~~G~F~L~SG~~S~~---Y~d~~~~~~~P~~~~~i~~~~~~~i~-~~~~i~G~~~ggip~a~~ia~~~ 80 (174)
T PRK13812 5 DLVAALRDADAVQFGEFELSHGGTSEY---YVDKYLFETDPECLSAIAAAFADRID-EDTTLAGVALGAVPLVAATATEA 80 (174)
T ss_pred HHHHHHHHCCCEEECEEEECCCCCCHH---HCCCCHHHCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHH
T ss_conf 999999988986966389477885723---44380441799999999999998604-21638675524399999999982
Q ss_pred CCCEEEEECCCCCCCCCEEECCCCCC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 99799983267676321000024545-57428995213203366888989875268752178720555571689888636
Q gi|254780409|r 182 GCLLAIVDKRREHPGKIEVMNIIGKV-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKS 260 (310)
Q Consensus 182 ~~~~~~~~K~R~~~~~v~~~~~~gdV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s 260 (310)
+.|+.+..|.....|. ...+.|++ +|+.|+||||++.||+++.++++.+++.|+.-+-++|.--- .+++.|+|.+.
T Consensus 81 ~~p~~~vRke~K~hG~--~~~ieG~~~~g~rVlivEDViTTG~S~~eai~~l~~~G~~V~~v~vivDR-~eg~~e~l~~~ 157 (174)
T PRK13812 81 GVPYVIARKQAKEYGT--GNRIEGRLDDGEEVVVLEDIATTGQSAVDAVEALRDAGATVNRVLVVVDR-EEGARENLAEH 157 (174)
T ss_pred CCCEEEEEECCCCCCC--CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEC-CCCHHHHHHHC
T ss_conf 9988999843677664--43031323578669999864457801999999999879979999999977-85658999977
Q ss_pred CCC
Q ss_conf 998
Q gi|254780409|r 261 KMK 263 (310)
Q Consensus 261 ~i~ 263 (310)
++.
T Consensus 158 gv~ 160 (174)
T PRK13812 158 DVE 160 (174)
T ss_pred CCE
T ss_conf 980
No 35
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.12 E-value=1e-09 Score=84.87 Aligned_cols=154 Identities=19% Similarity=0.308 Sum_probs=102.5
Q ss_pred HHHHHHEECCCCEEEEECCCCHHHH-HHCCCCCE--ECCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7652000026772699515835776-52588620--0010377778765305-855518851665635789999997099
Q gi|254780409|r 108 LVANLITQAGADRVIMLDLHAGQVQ-GFFDIPTD--NLYALPILERDIKERN-DISNLMVVSPDVGGVVRARALAKRLGC 183 (310)
Q Consensus 108 ~~a~ll~~~G~d~vit~DlH~~~~~-~~F~ip~~--nl~~~~~l~~~l~~~~-~~~~~vVVaPD~G~~~ra~~~a~~L~~ 183 (310)
.+.++|...|+=+.=.+-|-|...- -||+...- +-....++++.+.+.. +.+-.+|++|-.||++.|..+|..++.
T Consensus 18 ~ll~~l~~~gal~~G~F~L~SG~~S~~Y~d~r~~~~~p~~~~~i~~~~~~~i~~~~~d~I~G~a~Ggipla~~va~~~~~ 97 (187)
T PRK13810 18 ELIAALKACGAVRYGDFTLASGKKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTIAGVELGGVPLATAVSLETGL 97 (187)
T ss_pred HHHHHHHHCCCEEECEEEECCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99999998899696928947757671235194454789999999999998441149877943110127999999998199
Q ss_pred CEEEEECCCCCCCCCEEECCCCCC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 799983267676321000024545-5742899521320336688898987526875217872055557168988863699
Q gi|254780409|r 184 LLAIVDKRREHPGKIEVMNIIGKV-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKM 262 (310)
Q Consensus 184 ~~~~~~K~R~~~~~v~~~~~~gdV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i 262 (310)
|+.++.|.....|.- ..+.|++ +|..|+||||++.|||++.++++.+++.|+.-+.++|.--- .+++.++|.+.++
T Consensus 98 p~~~vRke~K~~G~~--~~ieG~~~~g~rVlvVEDViTTGgS~~eai~~l~~~G~~V~~v~~ivDR-~~g~~e~l~~~gv 174 (187)
T PRK13810 98 PLLIVRKSVKDYGTK--SRFVGDLKPEDRIVMLEDVTTSGGSVRDAIEVVREAGAIVKYVITVVDR-EEGATENLKEADV 174 (187)
T ss_pred CEEEEEECCCCCCCC--CEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEC-CCCHHHHHHHCCC
T ss_conf 869998337764434--3588504799889999854356823999999999889979999999977-8476999997799
Q ss_pred CE
Q ss_conf 89
Q gi|254780409|r 263 KE 264 (310)
Q Consensus 263 ~~ 264 (310)
.-
T Consensus 175 ~~ 176 (187)
T PRK13810 175 EL 176 (187)
T ss_pred CE
T ss_conf 09
No 36
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.07 E-value=1.2e-08 Score=77.71 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=86.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC-CCCEEEEECHHHCCHHHHHHHHHHHHHC
Q ss_conf 855518851665635789999997099799983267676321000024545-5742899521320336688898987526
Q gi|254780409|r 157 DISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV-EGKDCILIDDIVDTGGTLCGAADALYEQ 235 (310)
Q Consensus 157 ~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~ 235 (310)
+.+-.++.+|--||++.|..++-.++.|+.+..|+....|+ ...++|+. +|+.|+||||++.||+++.++++.|++.
T Consensus 342 ~~~fD~i~GvpY~glP~AT~lSl~~~~Pm~~~RKE~K~hGt--~~~IeG~~~~G~~vlIIdDViTsG~Si~e~i~~L~~~ 419 (478)
T PRK05500 342 NLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGT--RRLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSA 419 (478)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC--CCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89976796666540999999999828976996164356688--8725653389988999960126778799999999987
Q ss_pred CCCCE--EEEEECCCCCHHHHHHHHHCCCCE
Q ss_conf 87521--787205555716898886369989
Q gi|254780409|r 236 GALSV--TAYITHGVLSSSSIERIEKSKMKE 264 (310)
Q Consensus 236 GA~~V--~~~~THgifs~~a~e~l~~s~i~~ 264 (310)
|++-. .++.-+ -.++.++|.+.|+.-
T Consensus 420 G~~V~~~vV~lDR---eeg~~~~L~~~Gi~l 447 (478)
T PRK05500 420 GLNVRDIVVFIDH---EQGVKDKLQSHGYQA 447 (478)
T ss_pred CCEEEEEEEEEEC---CCCHHHHHHHCCCEE
T ss_conf 9938779999935---423688998679369
No 37
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.02 E-value=8.4e-09 Score=78.75 Aligned_cols=103 Identities=29% Similarity=0.415 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCC-CC-EEEEECCCCCCCCCEEECCCC-CCCCCEEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 5551885166563578999999709-97-999832676763210000245-45574289952132033668889898752
Q gi|254780409|r 158 ISNLMVVSPDVGGVVRARALAKRLG-CL-LAIVDKRREHPGKIEVMNIIG-KVEGKDCILIDDIVDTGGTLCGAADALYE 234 (310)
Q Consensus 158 ~~~~vVVaPD~G~~~ra~~~a~~L~-~~-~~~~~K~R~~~~~v~~~~~~g-dV~gr~vIIVDDii~TGgTi~~aa~~Lk~ 234 (310)
.+-.+|++|-.||++.|..+|..|+ .+ +.+..|+....|+. ..+.| .++|+.|+||||++.||+++.++++.+++
T Consensus 60 ~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K~hG~~--~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~ 137 (201)
T COG0461 60 LEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTG--GLIEGGEVKGEKVVVVEDVITTGGSILEAVEALRE 137 (201)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECEECCCCCC--CEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7876897523345489999999845488279982200047876--51574378998999997201678769999999998
Q ss_pred CCCCC--EEEEEECCCCCHHHHHHHHHCCCCEE
Q ss_conf 68752--17872055557168988863699899
Q gi|254780409|r 235 QGALS--VTAYITHGVLSSSSIERIEKSKMKEL 265 (310)
Q Consensus 235 ~GA~~--V~~~~THgifs~~a~e~l~~s~i~~i 265 (310)
+|+.- |.+++..+ .++.+.+.+.++.-.
T Consensus 138 ~G~~V~gv~~ivDR~---~~~~~~~~~~g~~~~ 167 (201)
T COG0461 138 AGAEVVGVAVIVDRQ---SGAKEVLKEYGVKLV 167 (201)
T ss_pred CCCEEEEEEEEEECC---HHHHHHHHHCCCCEE
T ss_conf 698598999999520---667888986599668
No 38
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.01 E-value=4e-09 Score=80.93 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=79.0
Q ss_pred HHHHHHHHHHCC------CCCEEEEECCCCHHHHHHHHHHHCC---CC--EEEEECCC-----CCCCCCEEE-CCCCCCC
Q ss_conf 777787653058------5551885166563578999999709---97--99983267-----676321000-0245455
Q gi|254780409|r 146 PILERDIKERND------ISNLMVVSPDVGGVVRARALAKRLG---CL--LAIVDKRR-----EHPGKIEVM-NIIGKVE 208 (310)
Q Consensus 146 ~~l~~~l~~~~~------~~~~vVVaPD~G~~~ra~~~a~~L~---~~--~~~~~K~R-----~~~~~v~~~-~~~gdV~ 208 (310)
..+++.|.+.+. .+++++|+.=.||..+...+.+.+. .| +.++.-.. .++|++... .+..+++
T Consensus 38 ~elg~qIs~dY~~~~l~~~~pL~vigVLkGs~~F~aDL~R~i~~~~ip~~iDFm~vSSYg~gt~SsG~v~i~~dl~~~i~ 117 (211)
T PTZ00271 38 AKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVE 117 (211)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEECCEEEEEECCCCCCC
T ss_conf 99999999987035546789769999845709999999997123699838899996206999710752899445887768
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf 74289952132033668889898752687521787205555716898
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIE 255 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e 255 (310)
||+|+|||||||||.||....+.|+++||++|..|+ +|..+...
T Consensus 118 gk~VLIVEDIvDTG~TL~~l~~~l~~~~p~Svki~t---Ll~K~~~r 161 (211)
T PTZ00271 118 NRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVV---LLDKPSGR 161 (211)
T ss_pred CCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEE---EEECCCCC
T ss_conf 987999941321255899999999854998389999---78472104
No 39
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.01 E-value=4.2e-09 Score=80.72 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=81.2
Q ss_pred CCCCEECCHHHHH----HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC--------------CC
Q ss_conf 8862000103777----78765305855518851665635789999997099799983267676--------------32
Q gi|254780409|r 136 DIPTDNLYALPIL----ERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHP--------------GK 197 (310)
Q Consensus 136 ~ip~~nl~~~~~l----~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~--------------~~ 197 (310)
.++..++.+-..+ ++.+.++...+-.+|+++.+.|...|..+|..||.||.++.|..... +.
T Consensus 25 ~ia~~~~lGD~El~~~~a~~la~~~p~~vD~Ivt~EarGiplA~~lA~~Lg~p~V~vRK~~K~ym~~~~~~~~~Sitt~~ 104 (178)
T PRK07322 25 AIASFVILGDTELTEAAAEALAPRLPTEVDVLVTAEAKGIPLAHELSRILGLPYVVARKSVKPYMQDPLIQEVLSITTGK 104 (178)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECC
T ss_conf 58999971878999999999997679988799986431458899999997999899985787678887789988875045
Q ss_pred CEEECCCC----CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 10000245----455742899521320336688898987526875217872055557168988
Q gi|254780409|r 198 IEVMNIIG----KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIER 256 (310)
Q Consensus 198 v~~~~~~g----dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~ 256 (310)
.+.+.+.+ .++|+.|+||||.++||||+..+.+.+++.||.-|-+++. +--|++.+|
T Consensus 105 ~q~l~ld~~~~~~l~G~rVlivDDvi~tGgt~~a~~~l~~~~Ga~vvg~~ai--~~eG~~~~r 165 (178)
T PRK07322 105 PQLLVLDGADAEKLKGKRVAIVDDVVSTGGSLTAMERLVERAGGEVVAKAAI--LAEGDASNR 165 (178)
T ss_pred CEEEEEECHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEEEE--EEECCCCCC
T ss_conf 5389850002211379859999634423837999999999869989999999--975686667
No 40
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.99 E-value=4.6e-09 Score=80.48 Aligned_cols=154 Identities=25% Similarity=0.347 Sum_probs=97.0
Q ss_pred HHHHHHHHHEECCCCEEEEECCCCHHH-HHHCCCCCE--ECCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 477765200002677269951583577-652588620--0010377778765305-855518851665635789999997
Q gi|254780409|r 105 SAKLVANLITQAGADRVIMLDLHAGQV-QGFFDIPTD--NLYALPILERDIKERN-DISNLMVVSPDVGGVVRARALAKR 180 (310)
Q Consensus 105 sak~~a~ll~~~G~d~vit~DlH~~~~-~~~F~ip~~--nl~~~~~l~~~l~~~~-~~~~~vVVaPD~G~~~ra~~~a~~ 180 (310)
..+.+.++|...|+=+.=.+-+-|... .-||+...- +-.....+++.+.+.. ..+-..|++|-.||++.|..+|..
T Consensus 4 ~~~~~~~~l~~~~al~~G~F~L~SG~~S~~Y~d~~~l~~~p~~~~~i~~~~~~~i~~~~~d~I~G~a~ggipia~~ia~~ 83 (200)
T PRK00455 4 YAREFLEFLLEIGALLFGHFTLSSGRKSPYYFDCRKLFNYPEALALLGRFLAEAIKDSGIDFVAGPATGGIPLAAAVARA 83 (200)
T ss_pred HHHHHHHHHHHCCCEEECCEEECCCCCCHHHHCCHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 89999999998899597968867747561671888988699999999999999975449989973331068999999997
Q ss_pred CCCCEEEEECCCCCCCCCEEECCCCCC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---HHHHHH
Q ss_conf 099799983267676321000024545-5742899521320336688898987526875217872055557---168988
Q gi|254780409|r 181 LGCLLAIVDKRREHPGKIEVMNIIGKV-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLS---SSSIER 256 (310)
Q Consensus 181 L~~~~~~~~K~R~~~~~v~~~~~~gdV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs---~~a~e~ 256 (310)
|+.|+.+.+|+....+. ...++|.+ +|..|+||||++.||+|+.++++.|++.|+.-+-++| ++. .++.+.
T Consensus 84 l~~p~~~~Rke~K~hG~--~~~ieG~~~~g~~VliVeDViTtG~S~~~ai~~l~~~G~~V~~v~v---ivDR~~~~~~~~ 158 (200)
T PRK00455 84 LDLPMIFVRKEAKDHGE--GRQIEGALLKGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAV---IVDRELSAAQEV 158 (200)
T ss_pred CCCCEEEEECCCCCCCC--CCEEECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEE---EEECCCHHHHHH
T ss_conf 29987999705775565--8666424455453488763010470199999999987997999999---995673566778
Q ss_pred HHHCCCC
Q ss_conf 8636998
Q gi|254780409|r 257 IEKSKMK 263 (310)
Q Consensus 257 l~~s~i~ 263 (310)
+.+.++.
T Consensus 159 ~~~~gi~ 165 (200)
T PRK00455 159 EADAGVP 165 (200)
T ss_pred HHHCCCC
T ss_conf 9865997
No 41
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=98.98 E-value=4.9e-09 Score=80.30 Aligned_cols=120 Identities=23% Similarity=0.357 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCE-----------EECCCCC---CC
Q ss_conf 0377778765305-8555188516656357899999970997999832676763210-----------0002454---55
Q gi|254780409|r 144 ALPILERDIKERN-DISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIE-----------VMNIIGK---VE 208 (310)
Q Consensus 144 ~~~~l~~~l~~~~-~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~-----------~~~~~gd---V~ 208 (310)
+...+++++++.. ..+...||+|++.|-=....+|-+||++|+-++|.-.-|++.- ..++.-| .+
T Consensus 34 ~id~l~~~~~~~~~~id~d~iVG~EaRGFifG~~LA~~LgvGFVPVRK~GKLP~~t~~~~Y~LEYG~d~lEIh~DA~~~~ 113 (175)
T TIGR01090 34 LIDLLVERYKDANGEIDADLIVGLEARGFIFGAALAYKLGVGFVPVRKPGKLPGETVSASYDLEYGKDSLEIHKDAIKIP 113 (175)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECEECCCCEEEEEHHHHHCC
T ss_conf 99999999986079515136876766725778899997089806754787668422667403004730353411136407
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 7428995213203366888989875268752178720555571689888636998
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMK 263 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~ 263 (310)
|..|+||||++.||||+..+.+.+++.||.=|-+|.-=.+..=+..++|+..++.
T Consensus 114 g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aFliEL~~L~G~~~L~~~~~~ 168 (175)
T TIGR01090 114 GQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAFLIELKDLNGRKKLEPNGVP 168 (175)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCHHHHHCCCCC
T ss_conf 8908998322012678999999999859616874555422447852100103685
No 42
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.98 E-value=6.8e-09 Score=79.39 Aligned_cols=114 Identities=28% Similarity=0.315 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEE-----------CCC-CC-CCCC
Q ss_conf 377778765305-855518851665635789999997099799983267676321000-----------024-54-5574
Q gi|254780409|r 145 LPILERDIKERN-DISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVM-----------NII-GK-VEGK 210 (310)
Q Consensus 145 ~~~l~~~l~~~~-~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~-----------~~~-gd-V~gr 210 (310)
...+.+++.+.. +.+-..|+++++.|..++..+|..||+||..+.|+-.-++++... .+. +. -+|.
T Consensus 35 ~~~~~~~l~~~~~~~~vD~IvgiEarGfi~a~alA~~l~~p~v~iRK~gKLPg~~~s~~y~lEYG~~~lei~~~~i~~g~ 114 (174)
T PRK02304 35 LREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPGETISESYELEYGTDTLEIHKDAIKPGD 114 (174)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCEECCHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCC
T ss_conf 99999999998434899899998655521015889982998799972898998564512673676216999823558999
Q ss_pred EEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 289952132033668889898752687521787205555716898886
Q gi|254780409|r 211 DCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIE 258 (310)
Q Consensus 211 ~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~ 258 (310)
.|+||||.+.||||+..+++.+++.||+-+-+++-=-+-.-+..++|+
T Consensus 115 ~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~liel~~l~G~~~L~ 162 (174)
T PRK02304 115 RVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKLE 162 (174)
T ss_pred EEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHC
T ss_conf 999997154307179999999998799899999999818788488746
No 43
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.96 E-value=1.1e-08 Score=78.02 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=83.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC---CCCE---------EECCCCCC-CCCEEE
Q ss_conf 7778765305855518851665635789999997099799983267676---3210---------00024545-574289
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHP---GKIE---------VMNIIGKV-EGKDCI 213 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~---~~v~---------~~~~~gdV-~gr~vI 213 (310)
.++..+.+..+.+=..+++|.++|++.|..++...+.|+.+..|+..+- +++. ......++ +|..|+
T Consensus 36 ~i~~~ii~~~D~~iDkIv~iEa~GipiatalSl~t~iPlviiRKr~ygl~~~~e~~~~~~Tgys~g~iy~n~I~~GdrVl 115 (184)
T PRK12560 36 EVAHKVIQIIDMDIDKIVTEEDKGAPLATAVSLLSGKPLAMARWYPYSLSELNNNVVNISSEYFEGVVYLNGISAGDRVA 115 (184)
T ss_pred HHHHHHHHHCCCCCCEEEEHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCEEE
T ss_conf 99999998616687689741335638899999975998899981467888785288875155577689704679999899
Q ss_pred EECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH-HCC
Q ss_conf 952132033668889898752687521787205555716898886-369
Q gi|254780409|r 214 LIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIE-KSK 261 (310)
Q Consensus 214 IVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~-~s~ 261 (310)
|+||.++||||+..+++.+++.||.=+-++|.--.-..+..+++. +.+
T Consensus 116 IVDDvlaTGGTl~a~~~ll~~~Ga~V~~i~~vIEk~~~~Gr~~l~~~~G 164 (184)
T PRK12560 116 IIDDTLSTGGTVIALIKAIQNSGGIVKDLICAVEKIQNNGKKNIFTQTG 164 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHCCC
T ss_conf 9951205675899999999986998999999998166565777755259
No 44
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.95 E-value=9.7e-09 Score=78.35 Aligned_cols=110 Identities=24% Similarity=0.318 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC-----------CEEECCCCCC--CCCEEE
Q ss_conf 777876530585551885166563578999999709979998326767632-----------1000024545--574289
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGK-----------IEVMNIIGKV--EGKDCI 213 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~-----------v~~~~~~gdV--~gr~vI 213 (310)
.+++.+++. .-..|++|.++|...|..+|..||+||.++.|.+..+.+ .+......+. +|..|+
T Consensus 44 ~~~~~~~~~---~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVl 120 (179)
T COG0503 44 ELAERYKDD---GIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVL 120 (179)
T ss_pred HHHHHHCCC---CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCEEEEEEEHHHCCCCCEEE
T ss_conf 999984005---99899997377840499999985998899995687886435789986064179998720068999899
Q ss_pred EECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 9521320336688898987526875217872055557168988863
Q gi|254780409|r 214 LIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEK 259 (310)
Q Consensus 214 IVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~ 259 (310)
||||.++||||+....+.+.+.||.-+.+++.=..-..+-.+++.+
T Consensus 121 IVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~~l~~ 166 (179)
T COG0503 121 IVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRKKLED 166 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCEECCC
T ss_conf 9965401567899999999988998999999997245555020345
No 45
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=98.93 E-value=1.8e-08 Score=76.64 Aligned_cols=112 Identities=27% Similarity=0.439 Sum_probs=83.7
Q ss_pred HCCCCCEECC--HHHHHHHHHHHHC--CC-CCEEEEECCCCHHHHHHHHHHHCCCC---------EEEEECCCCCCCCCE
Q ss_conf 2588620001--0377778765305--85-55188516656357899999970997---------999832676763210
Q gi|254780409|r 134 FFDIPTDNLY--ALPILERDIKERN--DI-SNLMVVSPDVGGVVRARALAKRLGCL---------LAIVDKRREHPGKIE 199 (310)
Q Consensus 134 ~F~ip~~nl~--~~~~l~~~l~~~~--~~-~~~vVVaPD~G~~~ra~~~a~~L~~~---------~~~~~K~R~~~~~v~ 199 (310)
|||+...|.. ...++.+|+.+.. ++ +-.+|.+|--||++-|..++-.+..+ +.+++|+....|+
T Consensus 28 y~d~kl~~t~~~~~~~~~~~~~~~~~~~lPe~d~iaG~alggiPiA~~vs~~~~~~~~~kf~~~~~~~~RKe~KdhG~-- 105 (187)
T TIGR00336 28 YFDIKLANTGPELANLIAEYIAAIIKDHLPEFDVIAGPALGGIPIATAVSVKLAKPEGSKFLDIPLLIVRKEAKDHGE-- 105 (187)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC--
T ss_conf 782123016689999999999998641289524664242352258999999983558860005048998336145568--
Q ss_pred EECCCC-CC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCC--CEEEEEECC
Q ss_conf 000245-45-5742899521320336688898987526875--217872055
Q gi|254780409|r 200 VMNIIG-KV-EGKDCILIDDIVDTGGTLCGAADALYEQGAL--SVTAYITHG 247 (310)
Q Consensus 200 ~~~~~g-dV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~--~V~~~~THg 247 (310)
...++| ++ +|..|+||||+|.||+++.+|++.++++|+. .|.++++-.
T Consensus 106 g~~i~GP~~~eG~kvvvveDV~TtG~s~~~A~~~i~~ag~~V~~v~~~vDR~ 157 (187)
T TIGR00336 106 GGNIEGPELLEGDKVVVVEDVITTGGSILEAVEAIQEAGGEVAGVIVIVDRQ 157 (187)
T ss_pred CCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf 9814567657896389995143424799999999986188899999998267
No 46
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.88 E-value=2e-08 Score=76.31 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC---------CE-----EEEE----CCCCCCCCCEEEC-CCC
Q ss_conf 377778765305855518851665635789999997099---------79-----9983----2676763210000-245
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGC---------LL-----AIVD----KRREHPGKIEVMN-IIG 205 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~---------~~-----~~~~----K~R~~~~~v~~~~-~~g 205 (310)
...+++.|.+.+..+++++++.=+||.++...+.+.|+. +. .++. -.-.++|++.+.. ...
T Consensus 54 ie~LA~dI~~dy~g~~i~llcVLKG~~~F~aDLv~~l~~~~~~s~~~~~~~~~~~dFi~vsSY~~~~SsG~v~i~~d~~~ 133 (231)
T PTZ00149 54 IEKLAFDIKKVYNNEEFHIICLLKGSRGFFSALLKHLNRIHNYSATESPKHLFGEHYVRVKSYCNDQSLDRIEIVSEDLS 133 (231)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCCCCCCCEEEECCCCC
T ss_conf 99999999998489817999996462788999999987651044445665222000589850279876673699226633
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH
Q ss_conf 45574289952132033668889898752687521787205555716
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSS 252 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~ 252 (310)
+++||+|+||+||+|||.||....+.|++.|+++|.+++ +|..+
T Consensus 134 ~l~gk~VLIVEDIvDTG~Tl~~l~~~l~~~~p~svkv~~---LL~K~ 177 (231)
T PTZ00149 134 CLKDKHVLIVEDIIDTGKTLLKFCEYLKKFEIKTIAIAC---LFIKR 177 (231)
T ss_pred CCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEE---EEECC
T ss_conf 268984999955277178999999999737999689999---78567
No 47
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase; InterPro: IPR005904 Phosphoribosyltransferases (PRT) are enzymes that catalyze the synthesis of beta-n-5'-monophosphates from phosphoribosylpyrophosphate (PRPP) and an enzyme specific amine. A number of PRT's are involved in the biosynthesis of purine, pyrimidine, and pyridine nucleotides, or in the salvage of purines and pyrimidines. Purine nucleotides are synthesized both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. This entry presents hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC), which belongs to phosphoribosyltransferase family and is involved in purine salvage.; GO: 0004422 hypoxanthine phosphoribosyltransferase activity, 0006166 purine ribonucleoside salvage, 0005737 cytoplasm.
Probab=98.84 E-value=2.5e-08 Score=75.57 Aligned_cols=106 Identities=22% Similarity=0.332 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHCCC------CCEEEEECCCCHHHHHHHHHHHCC----------CCE--EEEE-----CCCCCCCCCEEE
Q ss_conf 37777876530585------551885166563578999999709----------979--9983-----267676321000
Q gi|254780409|r 145 LPILERDIKERNDI------SNLMVVSPDVGGVVRARALAKRLG----------CLL--AIVD-----KRREHPGKIEVM 201 (310)
Q Consensus 145 ~~~l~~~l~~~~~~------~~~vVVaPD~G~~~ra~~~a~~L~----------~~~--~~~~-----K~R~~~~~v~~~ 201 (310)
...+++++.+.+.+ +++++|+.=+||..+...+++.+. .|+ .++. .--.++|++++.
T Consensus 12 ~~eLa~~I~~~Y~~~~~tt~~~l~~~gvLKGs~~F~aDL~~~i~~~~~~S~RS~~~~~~dFm~vSSYg~~~~s~g~vki~ 91 (183)
T TIGR01203 12 IAELAKQITEDYQGKKPTTDEELVLVGVLKGSFPFFADLIRAIDKLNKYSDRSVVPVQVDFMAVSSYGNGMSSSGDVKIL 91 (183)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEECCEEEE
T ss_conf 99999999987356789989738999972562445999999988742206873011488889887507983031113798
Q ss_pred -CCCCCCC-CCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH
Q ss_conf -0245455-742899521320336688898987526875217872055557168
Q gi|254780409|r 202 -NIIGKVE-GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSS 253 (310)
Q Consensus 202 -~~~gdV~-gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a 253 (310)
.+..|++ ||+|+|||||||||-||....+.|+..+|+++..|. ++..+.
T Consensus 92 kDld~di~~gk~VLiVEDIvDtG~Tl~~~~~~L~~r~Pksl~i~~---LL~Kp~ 142 (183)
T TIGR01203 92 KDLDEDIKRGKDVLIVEDIVDTGLTLSYLLELLKARKPKSLKIVT---LLDKPS 142 (183)
T ss_pred ECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEE---EEECCC
T ss_conf 527898403781899961534246799999987138993689999---865586
No 48
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.81 E-value=5.3e-09 Score=80.07 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=107.5
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCC------C--------CCCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-8326767------6--------3210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRREH------P--------GKIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~------~--------~~v~~~~~~gdV~gr~ 211 (310)
-+.+.|.++..-+-.+|+..-..|..-|-.||+.+|.||.. +-|.|-- + -+.+...+-..++||.
T Consensus 271 ~mG~~La~e~~~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKr 350 (470)
T COG0034 271 RMGEKLAEEIPVEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKR 350 (470)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCE
T ss_conf 99999987587336579834988768999999983996555521023243466688678877503030370178858976
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC-CCCCCHHHHCCCCEEEEECHH
Q ss_conf 8995213203366888989875268752178720555571689888636998999817-887843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD-SIQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn-Ti~~~~~~~~~~ki~visva~ 290 (310)
|++|||-|-.|.|+.+.+++||++||++|++...-|-...++.--++-+.-+++|..+ |+.-.......+.|..+|+..
T Consensus 351 VvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~~~IgaDSL~yLsleg 430 (470)
T COG0034 351 VVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAIGADSLAYLSLEG 430 (470)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCEEEECHHH
T ss_conf 99972651457669999999997188788998428975677866457899899964789889999884877046424999
Q ss_pred HHHHHHHHH
Q ss_conf 999999987
Q gi|254780409|r 291 LMGEAINRT 299 (310)
Q Consensus 291 llA~aI~~i 299 (310)
|+ ++|..-
T Consensus 431 L~-~aig~~ 438 (470)
T COG0034 431 LI-KAIGRD 438 (470)
T ss_pred HH-HHHCCC
T ss_conf 99-996798
No 49
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=98.78 E-value=9e-08 Score=71.93 Aligned_cols=100 Identities=33% Similarity=0.467 Sum_probs=75.3
Q ss_pred HHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHCC------CCEEEEEC--CCC------CCCCCEEECCCCCCCC
Q ss_conf 37777876530-585551885166563578999999709------97999832--676------7632100002454557
Q gi|254780409|r 145 LPILERDIKER-NDISNLMVVSPDVGGVVRARALAKRLG------CLLAIVDK--RRE------HPGKIEVMNIIGKVEG 209 (310)
Q Consensus 145 ~~~l~~~l~~~-~~~~~~vVVaPD~G~~~ra~~~a~~L~------~~~~~~~K--~R~------~~~~v~~~~~~gdV~g 209 (310)
..-++..+.+. .+.+++++++.-.||...|+.+++.|. +++..++- .|+ .......+.+.-+++|
T Consensus 16 i~RlA~qI~E~~~~~~~lvlvGI~~~G~~lA~rL~~~L~~~~~~~~~~~~ldit~yRDD~~~~~~~~~~~~~~i~~~~~g 95 (176)
T PRK05205 16 LTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEELEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEG 95 (176)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999986799886799998788999999999998787689872468887887315233578875555457644478
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf 428995213203366888989875268-75217872
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQG-ALSVTAYI 244 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~G-A~~V~~~~ 244 (310)
|+||+|||++.||.|+..|.+.+.+.| +++|-.++
T Consensus 96 k~ViLVDDVL~TGrTlraal~~l~~~grP~~I~lav 131 (176)
T PRK05205 96 KTVILVDDVLYTGRTIRAALDALFDYGRPARVQLAV 131 (176)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 889998310223689999999886369886799999
No 50
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=98.76 E-value=2.4e-08 Score=75.68 Aligned_cols=76 Identities=26% Similarity=0.441 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCCCEE--EEECCCCCC------------CCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHC
Q ss_conf 35789999997099799--983267676------------3210000245455742899521320336688898987526
Q gi|254780409|r 170 GVVRARALAKRLGCLLA--IVDKRREHP------------GKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQ 235 (310)
Q Consensus 170 ~~~ra~~~a~~L~~~~~--~~~K~R~~~------------~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~ 235 (310)
+...|+.+++.++.|+. .+.+.|... +--....+.++++|++++||||++.||.|+-++++.|+++
T Consensus 134 a~~lA~~la~~l~~p~~~~~L~R~r~t~~Q~~ls~~~R~~Nv~~aF~~~~~~~g~~vlLVDDV~TTGaTl~~~a~~L~~a 213 (227)
T PRK11595 134 SDLLCRPLAHWLGCDYDSETLTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMVIVDDVVTTGSTVAEIAQLLLRN 213 (227)
T ss_pred HHHHHHHHHHHHCCCCCHHHHEECCCCCCCCCCCHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999998389963013231358767456899999865428878457889697999620146399999999999980
Q ss_pred CCCCEEEEEE
Q ss_conf 8752178720
Q gi|254780409|r 236 GALSVTAYIT 245 (310)
Q Consensus 236 GA~~V~~~~T 245 (310)
||++|++++-
T Consensus 214 Ga~~V~v~~l 223 (227)
T PRK11595 214 GAATVQVWCL 223 (227)
T ss_pred CCCEEEEEEE
T ss_conf 9987999999
No 51
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.72 E-value=4.1e-08 Score=74.18 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=104.3
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCC--------------CCCCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-8326767--------------63210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRREH--------------PGKIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~--------------~~~v~~~~~~gdV~gr~ 211 (310)
.+.+.|.+..+.+..+|+..-..|..-|..+|+.+|.|+.. +-|.|.. .-+.+...+...++||.
T Consensus 279 ~lG~~LA~e~~~~~DiVi~VPdSg~~aa~gya~~sgip~~~glikn~y~gRTFI~p~q~~R~~~v~~Kln~i~~~i~gK~ 358 (474)
T PRK06388 279 RMGMRLAKESPVEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKR 358 (474)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHCEEECCCCCCCCCCCCHHHHHHCCCEEEEEEEEEECCCE
T ss_conf 99999863479888889957886199999999865994110056535447652388677787444266665024417988
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHH
Q ss_conf 89952132033668889898752687521787205555716898886369989998178-87843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~ 290 (310)
+++|||-|-.|.|+.+.++.||+.||++|++..+-|-...++.--++-+.-++++..+- ++........+.|..+|+..
T Consensus 359 vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC~yGID~p~~~eLiA~~~~~eei~~~igaDsL~yls~e~ 438 (474)
T PRK06388 359 IVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPCYFGVDMKTKDQFIARGKTDEEINNEIGADSLAFLSIDG 438 (474)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 99981661656679999999997799889999789996788666237899799965799999999985998689327999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780409|r 291 LMGEAIN 297 (310)
Q Consensus 291 llA~aI~ 297 (310)
|. +|+.
T Consensus 439 l~-~a~g 444 (474)
T PRK06388 439 LK-QAIG 444 (474)
T ss_pred HH-HHHC
T ss_conf 99-9868
No 52
>KOG1712 consensus
Probab=98.70 E-value=9.6e-08 Score=71.75 Aligned_cols=125 Identities=19% Similarity=0.298 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC------------CCCCC-CC
Q ss_conf 103777787653058555188516656357899999970997999832676763210000------------24545-57
Q gi|254780409|r 143 YALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMN------------IIGKV-EG 209 (310)
Q Consensus 143 ~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~------------~~gdV-~g 209 (310)
....++++++++....+-.+|++.++.|--+--.+|-.+|+.|.-+.|...-+|++-... -.|-+ .|
T Consensus 43 ~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g 122 (183)
T KOG1712 43 KLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGAGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPG 122 (183)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCHHHHHHCCCEEECCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCC
T ss_conf 99999999999873676129985410440028389998389756614689898754677876502700112112456998
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 4289952132033668889898752687521787205555716898886369989998
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVI 267 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~ 267 (310)
..|+||||++.||||+..|.+.+.+.||.-|-+.|.-.+-.=...+||..-++--++-
T Consensus 123 ~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~~pl~~Ll~ 180 (183)
T KOG1712 123 QRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKGKPLFSLLE 180 (183)
T ss_pred CEEEEEECHHHCCCCHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 7589983001137418999999997254788789999706537800058986189961
No 53
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=98.69 E-value=1.9e-07 Score=69.73 Aligned_cols=131 Identities=25% Similarity=0.358 Sum_probs=91.8
Q ss_pred HHHHHEECCCCE----EEEECCCCHHH---HHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 652000026772----69951583577---65258862000103777787653058555188516656357899999970
Q gi|254780409|r 109 VANLITQAGADR----VIMLDLHAGQV---QGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL 181 (310)
Q Consensus 109 ~a~ll~~~G~d~----vit~DlH~~~~---~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L 181 (310)
+-++++.+|+=+ |++==.||+.. ...|.-|=.--.--..|++-|.+. ..+..+||||-.||+-.+..+|+.|
T Consensus 2 v~~~y~~aGA~~EGhFlLsSG~hS~~flQ~~~ll~~P~~~~~lg~~LA~~i~~~-~~~~d~ivsPA~GGv~~~Ye~AR~L 80 (205)
T TIGR01367 2 VLDIYKKAGALLEGHFLLSSGKHSPYFLQSAKLLEDPELAEKLGEELAKKILKY-KLEVDVIVSPAMGGVILGYEVARAL 80 (205)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 358887717421371224057614236656567616368999999999999982-7870158647300046888999874
Q ss_pred C-----CCEEEEECCCCCCCCCEEECCCC-CC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9-----97999832676763210000245-45-5742899521320336688898987526875217872
Q gi|254780409|r 182 G-----CLLAIVDKRREHPGKIEVMNIIG-KV-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 182 ~-----~~~~~~~K~R~~~~~v~~~~~~g-dV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
+ .+.-+.+ |+..+.-+. --| .| +|-.+|+|.|+|.|||+..++++++++.|+.=|-++|
T Consensus 81 ~etlPd~R~iF~E--r~gsg~mkL--RrgF~v~pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vvg~a~ 146 (205)
T TIGR01367 81 SETLPDVRSIFAE--REGSGGMKL--RRGFEVKPGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVVGLAC 146 (205)
T ss_pred HHCCCCCCEEEEE--EECCCCCEE--CCCEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 1006888526777--607875201--11203369977999962110474489999999857982798421
No 54
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.69 E-value=4.3e-08 Score=74.06 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=104.4
Q ss_pred HHHHHHHHH-CCCC-CEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCC------CC--------CCEEECCCCCCCC
Q ss_conf 777876530-5855-5188516656357899999970997999-8326767------63--------2100002454557
Q gi|254780409|r 147 ILERDIKER-NDIS-NLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRREH------PG--------KIEVMNIIGKVEG 209 (310)
Q Consensus 147 ~l~~~l~~~-~~~~-~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~------~~--------~v~~~~~~gdV~g 209 (310)
.|++.+.+. .+.+ ++|+--||. |..-|-.+|+.+|.|+.. +-|.|.- ++ +.+...+...++|
T Consensus 280 ~LA~~i~~~~~~~~~DvVi~VPdS-g~~aA~gya~~sgipy~~gliKNrYvgRTFI~P~q~~R~~~vr~Kln~i~~~i~g 358 (503)
T PRK09246 280 KLAEKIKREWPDLDIDVVIPIPDT-SRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKG 358 (503)
T ss_pred HHHHHHHHHCCCCCCCCEEECCCC-CHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCEECCHHHCCC
T ss_conf 999998865787668625007997-1889999999719961201210365576776986889998676520036431569
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEEC
Q ss_conf 4289952132033668889898752687521787205555716898886369989998178-878434740798599811
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTI 288 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visv 288 (310)
|.+++|||-|-.|.|+.+.++.||++||++|++..+-|-+..++.--++-+.-++++..|- ++........+.|..+|+
T Consensus 359 K~vvlVDDSIVRGtT~k~Iv~~Lr~aGAkeVh~riasPpi~~Pc~yGID~~~~~eLIA~~~~~eei~~~igaDsL~yls~ 438 (503)
T PRK09246 359 KNVLLVDDSIVRGTTSEQIVQMARDAGAKKVYFASAAPPVRYPNVYGIDMPTANELIAHGRTVEEIRQLIGADGLIYQDL 438 (503)
T ss_pred CEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECH
T ss_conf 76999845531164199999999975998899996799857877673478997999656999999998859975886559
Q ss_pred HHHHHHHHHH
Q ss_conf 7999999998
Q gi|254780409|r 289 AQLMGEAINR 298 (310)
Q Consensus 289 a~llA~aI~~ 298 (310)
..|+ +|+..
T Consensus 439 e~l~-~a~~~ 447 (503)
T PRK09246 439 EDLI-EAVRD 447 (503)
T ss_pred HHHH-HHHHC
T ss_conf 9999-99743
No 55
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.67 E-value=4.3e-08 Score=74.04 Aligned_cols=150 Identities=18% Similarity=0.204 Sum_probs=102.0
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCC------------CCCCCEEECCCCCCCCCEEE
Q ss_conf 77787653058555188516656357899999970997999-832676------------76321000024545574289
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRRE------------HPGKIEVMNIIGKVEGKDCI 213 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~------------~~~~v~~~~~~gdV~gr~vI 213 (310)
.+.+.|.+..+.+..+|+..-..|..-|-.+|+.+|.|+.. +-|.|. ..-+.+...+-..++||.++
T Consensus 259 ~~G~~LA~e~~~~~DvVi~VPdSg~~aa~Gya~~~gip~~~glikn~y~gRtFI~P~qR~~~v~~Kl~~~~~~i~gK~vv 338 (442)
T PRK08341 259 RMGVELARESPAEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVV 338 (442)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHEEECCCCCCCCCCCCCHHHCEEEEEEEEEEEECCCCEE
T ss_conf 99999861289878989962897499999999862995243000001215544388730021044650100012798149
Q ss_pred EECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC-CCCCCHHHHCCCCEEEEECHHHH
Q ss_conf 95213203366888989875268752178720555571689888636998999817-88784347407985998117999
Q gi|254780409|r 214 LIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD-SIQPTDLVKSSAKIRILTIAQLM 292 (310)
Q Consensus 214 IVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn-Ti~~~~~~~~~~ki~visva~ll 292 (310)
+|||-|-.|.|+.+.++.||+.||++|++..+-|-...++.--++-+.-++++..+ |+.........+.|..+|+..|.
T Consensus 339 lvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC~yGiD~~~~~eLia~~~s~eei~~~igadsL~yls~e~l~ 418 (442)
T PRK08341 339 LVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPCYMGIDIPTRHELIAAWRSVEDIRKEIGADSLAYLSVEGLK 418 (442)
T ss_pred EEECCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHHHH
T ss_conf 96143410542999999999769988999968998577776765789989997579999999998599868820799999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780409|r 293 GEAIN 297 (310)
Q Consensus 293 A~aI~ 297 (310)
+||.
T Consensus 419 -~aig 422 (442)
T PRK08341 419 -RAVG 422 (442)
T ss_pred -HHHC
T ss_conf -9838
No 56
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.65 E-value=6.4e-07 Score=66.29 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCC-------------CCEEECCCCC--C
Q ss_conf 03777787653058-555188516656357899999970997999832676763-------------2100002454--5
Q gi|254780409|r 144 ALPILERDIKERND-ISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPG-------------KIEVMNIIGK--V 207 (310)
Q Consensus 144 ~~~~l~~~l~~~~~-~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~-------------~v~~~~~~gd--V 207 (310)
-..++..++...+. .+-..|+.+-..|++.|...|..|++|+.+..|.+..+. .+..+.+.-+ -
T Consensus 95 ~L~l~~~~~a~rF~~~~idkVlT~at~GIplA~~~A~~l~vplviakk~k~~~~~~~~~~~v~~~~~~~~tl~l~k~~l~ 174 (238)
T PRK08558 95 LLRLYEEYVAERFMGLRVDKVLTAATDGIPLAVAAASRFGADLVYAKQYKEPGVEKFYEEYQYLASGRPVTLYLPAWALK 174 (238)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEHHHCC
T ss_conf 99999999999817789858998468885399999998099789998136777465289999748995799995589979
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-HHC
Q ss_conf 57428995213203366888989875268752178720555571689888-636
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERI-EKS 260 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l-~~s 260 (310)
+|-.|+||||.+.||||+...++.+++.||.-+-+++--.+-..+ .+++ ++.
T Consensus 175 ~g~~VLIVDD~~~tG~T~~~~~~l~~~~ga~v~G~~~li~~~~~~-~~~~~e~~ 227 (238)
T PRK08558 175 RGERVLIVDDIIRSGETQRALLELCRQAGADVVGVFFLIAVGDVG-IDRLREEY 227 (238)
T ss_pred CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEECCCHH-HHHHHHHC
T ss_conf 998699983563437389999999998699799999999847337-78888761
No 57
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=98.64 E-value=7.7e-08 Score=72.36 Aligned_cols=149 Identities=20% Similarity=0.261 Sum_probs=101.1
Q ss_pred HHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHHHCCCCEEE-EECCCC--------------CCCCCEEECCCCCCCCC
Q ss_conf 777876530585551885-16656357899999970997999-832676--------------76321000024545574
Q gi|254780409|r 147 ILERDIKERNDISNLMVV-SPDVGGVVRARALAKRLGCLLAI-VDKRRE--------------HPGKIEVMNIIGKVEGK 210 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVV-aPD~G~~~ra~~~a~~L~~~~~~-~~K~R~--------------~~~~v~~~~~~gdV~gr 210 (310)
.+.+.|.+....+..+|+ -||.| ..-|..+|+.+|.|+.. +-|.|. ..-+.+...+...++||
T Consensus 274 ~~G~~LA~e~~~~~DiVi~VPdSg-~~aA~gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK 352 (480)
T PRK09123 274 NIGRELARESPVDADVVVPVPDSG-VPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGK 352 (480)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHHHCCCCHHHCEEECCCCCCCCCCCCHHHHHHCCEEEEEECCCCCCCC
T ss_conf 999999600798755277566764-4678988876399611225312421577438878777637077564033345898
Q ss_pred EEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECH
Q ss_conf 289952132033668889898752687521787205555716898886369989998178-8784347407985998117
Q gi|254780409|r 211 DCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIA 289 (310)
Q Consensus 211 ~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva 289 (310)
.+++|||-|-.|.|+.+.++.||+.||++|++..+-|-...++.--++-+.-+++|..|- +.-.......+.|..+|+.
T Consensus 353 ~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc~yGID~~~~~eLiA~~~s~eei~~~igaDsL~yls~e 432 (480)
T PRK09123 353 RVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPTTHPCFYGIDTPERSKLLAATHSLEEMAEYIGADSLAFLSID 432 (480)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHH
T ss_conf 29998066153676999999999779988999968998578766743689989985379999999988699769865699
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780409|r 290 QLMGEAIN 297 (310)
Q Consensus 290 ~llA~aI~ 297 (310)
.|. +||.
T Consensus 433 ~l~-~ai~ 439 (480)
T PRK09123 433 GLY-RAVG 439 (480)
T ss_pred HHH-HHHC
T ss_conf 999-9854
No 58
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=98.63 E-value=4.8e-08 Score=73.74 Aligned_cols=150 Identities=18% Similarity=0.242 Sum_probs=102.0
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCC--------------CCCCCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-832676--------------763210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRRE--------------HPGKIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~--------------~~~~v~~~~~~gdV~gr~ 211 (310)
.+.+.|.++...+..+|+..-.-|..-|..+|+.+|.|+.. +-|.|. ..-+.+...+...++||.
T Consensus 263 ~~G~~La~~~~v~~D~Vi~VPdsg~~~a~gya~~~~ip~~~~likn~y~gRtFI~p~q~~R~~~v~~Klnp~~~~i~gK~ 342 (445)
T PRK08525 263 KMGEELAKKFAVKADFVVPVPDSGVSAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMRKVLEGKR 342 (445)
T ss_pred HHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEHHHHCCCCE
T ss_conf 99999862568678817865898578899999982994555312220026301488544556532323002345217986
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHH
Q ss_conf 89952132033668889898752687521787205555716898886369989998178-87843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~ 290 (310)
+++|||-|=.|.|+.+.++.||+.||++|++..+-|-+..++.--++-+.-++++..|- +.-.......+-|.-+++..
T Consensus 343 vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi~~pC~yGiD~~~~~eLia~~~~~eei~~~igadsL~yls~e~ 422 (445)
T PRK08525 343 IVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEIKFPCTYGIDTPTFEELISANKSVEEVRKYIGADSLSFLSIEE 422 (445)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 99981761557789999999997799889999689996888667667899899975799999999885998699427999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780409|r 291 LMGEAIN 297 (310)
Q Consensus 291 llA~aI~ 297 (310)
|. +||.
T Consensus 423 l~-~ai~ 428 (445)
T PRK08525 423 LT-RSIG 428 (445)
T ss_pred HH-HHHC
T ss_conf 99-9848
No 59
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.62 E-value=1.1e-07 Score=71.37 Aligned_cols=152 Identities=23% Similarity=0.290 Sum_probs=105.2
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCC------CC--------CCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-8326767------63--------210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRREH------PG--------KIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~------~~--------~v~~~~~~gdV~gr~ 211 (310)
-+.+.|.+....+..+|+..-..|..-|-.+|+.+|.|+.. +-|.|.- ++ +.+...+...++||.
T Consensus 271 ~~G~~LA~e~~~~~DvVi~VPdSg~~aA~gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~ 350 (471)
T PRK06781 271 NMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKR 350 (471)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHCEEECCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCCCE
T ss_conf 99999862179888989978987388999999980997444301002014435387588998765301104100048988
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHH
Q ss_conf 89952132033668889898752687521787205555716898886369989998178-87843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~ 290 (310)
+++|||-|=.|.|+.+.++.||++||++|++..+-|-+..++.--++-+.-++++..+- ++........+.|..+|+..
T Consensus 351 vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~Pc~yGID~p~~~eLIA~~~~~eei~~~igaDsL~yls~e~ 430 (471)
T PRK06781 351 VVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAANHTVEEIREMIGADSLTFLSEDG 430 (471)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 99981660557569999999997799889999689985787666547899799862799999999885998698307999
Q ss_pred HHHHHHHHH
Q ss_conf 999999987
Q gi|254780409|r 291 LMGEAINRT 299 (310)
Q Consensus 291 llA~aI~~i 299 (310)
|. +|+.+-
T Consensus 431 l~-~ai~~~ 438 (471)
T PRK06781 431 LV-DAIGRP 438 (471)
T ss_pred HH-HHHCCC
T ss_conf 99-985786
No 60
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.60 E-value=7.7e-08 Score=72.38 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=104.3
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCC------CC--------CCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-8326767------63--------210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRREH------PG--------KIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~------~~--------~v~~~~~~gdV~gr~ 211 (310)
.+.+.+.++.+.+..+|+..-..|..-|-.+|+.+|.|+.. +-|.|.- ++ +.+...+-+.++||.
T Consensus 271 ~~G~~LA~e~~~~~DvVi~VPDSg~~aA~gya~~sgip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~v~gK~ 350 (475)
T PRK07631 271 NLGKQLAEEAPVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSAVRGVVEGKR 350 (475)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCCCCHHHHHHHHHCCEEECCCCCCCCE
T ss_conf 99999983279878889978996388999999872995454110013014657797588998744201424420038973
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHH
Q ss_conf 89952132033668889898752687521787205555716898886369989998178-87843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~ 290 (310)
+++|||-|=.|.|+.+.++.||+.||++|++..+-|-+..++.--++-+.-++++..+- ++........+.+..+|+..
T Consensus 351 vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc~yGID~~~~~eLIA~~~~~eei~~~igadsL~yls~e~ 430 (475)
T PRK07631 351 VVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPIAHPCFYGIDTSTHEELIASSHSVEEIRQEIGADSLAFLSVEG 430 (475)
T ss_pred EEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 79974435106419999999997699889999689985787666437899789864799999999985998688316999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780409|r 291 LMGEAIN 297 (310)
Q Consensus 291 llA~aI~ 297 (310)
|. +|+.
T Consensus 431 l~-~aig 436 (475)
T PRK07631 431 LL-KGIG 436 (475)
T ss_pred HH-HHHC
T ss_conf 99-9857
No 61
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=98.59 E-value=1.4e-06 Score=63.98 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC--CCCEEE-------------CCCCC--
Q ss_conf 37777876530585-5518851665635789999997099799983267676--321000-------------02454--
Q gi|254780409|r 145 LPILERDIKERNDI-SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHP--GKIEVM-------------NIIGK-- 206 (310)
Q Consensus 145 ~~~l~~~l~~~~~~-~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~--~~v~~~-------------~~~gd-- 206 (310)
+..+.+.|.+++.. +-..|+.+.+.|+..|...|..||+|+.+..|++..+ +++-.. .+-.+
T Consensus 35 ~~~iG~~fa~~F~~~~IdkIvTiEasGI~~A~~~A~~l~vPlV~aRK~~~~t~~~~~~~~~v~S~Tk~~~~~~~vsk~~l 114 (189)
T PRK09219 35 MNEIGKEFARRFKDAGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDNVYTATVYSFTKQVTSTVSVSKKFL 114 (189)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEEHHHC
T ss_conf 99999999998457899889998415857899999985999999973688678897689999931567089999746547
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE--CCCCCHHHHHHHHHCCC
Q ss_conf 557428995213203366888989875268752178720--55557168988863699
Q gi|254780409|r 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT--HGVLSSSSIERIEKSKM 262 (310)
Q Consensus 207 V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T--Hgifs~~a~e~l~~s~i 262 (310)
-+|-.|+|+||.+.||||+....+.+++.||.=+-+.+. -+...| .++|++.++
T Consensus 115 ~~gdrVliIDDflatGgt~~~~~~l~~~~ga~v~g~~~viEk~fq~G--r~~l~~~g~ 170 (189)
T PRK09219 115 SEEDKVLIIDDFLANGQAALGLIDIIEQAGAEVAGVGIVIEKSFQDG--RKLLEDKGY 170 (189)
T ss_pred CCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCH--HHHHHHCCC
T ss_conf 99875998745454467899999999987998999999999367563--899987899
No 62
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.58 E-value=1.1e-07 Score=71.39 Aligned_cols=150 Identities=18% Similarity=0.232 Sum_probs=100.1
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCC--------------CCCCCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-832676--------------763210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRRE--------------HPGKIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~--------------~~~~v~~~~~~gdV~gr~ 211 (310)
.+.+.|.+....+..+|+..-.-|..-|..+|+.+|.|+.. +-|.|. ..-+.+...+...++||.
T Consensus 295 ~~G~~LA~e~~v~~DiVi~VPdSg~~aA~gya~~sgipy~~glikn~YvgRTFI~p~q~~R~~~vr~Kln~~~~~i~gK~ 374 (495)
T PRK07349 295 RLGQQLAKESPVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQAMRESGIRMKLNPLKDVLAGKR 374 (495)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEECHHHHCCCE
T ss_conf 99998726068888638978996299999999973997122012045446555187588876320132013678858985
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC-CCCCCHHHHCCCCEEEEECHH
Q ss_conf 8995213203366888989875268752178720555571689888636998999817-887843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD-SIQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn-Ti~~~~~~~~~~ki~visva~ 290 (310)
+++|||-|-.|.|+.+.++.||++||++|++..+-|-+..++.--++-+.-++++..+ |++........+.|..+|+..
T Consensus 375 vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~~pC~yGID~pt~~eLIA~~~s~eeI~~~igaDSL~ylsle~ 454 (495)
T PRK07349 375 IIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPCFYGIDTDTQDQLIAATKSVEEIAEQIGVDSLAYLSWEG 454 (495)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 99982660557469999999997699889999689985777757557899799975799999999985998688226999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780409|r 291 LMGEAIN 297 (310)
Q Consensus 291 llA~aI~ 297 (310)
|. +|+.
T Consensus 455 L~-~ai~ 460 (495)
T PRK07349 455 ML-EATG 460 (495)
T ss_pred HH-HHHC
T ss_conf 99-9867
No 63
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=98.56 E-value=8.6e-08 Score=72.04 Aligned_cols=149 Identities=19% Similarity=0.271 Sum_probs=100.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCC------CC--------CCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-8326767------63--------210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRREH------PG--------KIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~------~~--------~v~~~~~~gdV~gr~ 211 (310)
.+.+.|.++.+.+..+|+..-..|..-|..+|+.+|.|+.. +-|.|-- ++ +.+...+...++||.
T Consensus 273 ~~G~~LA~e~~~~~DvVi~VPdSg~~aA~Gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~ 352 (484)
T PRK07272 273 RMGKRLAQEFPVDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKR 352 (484)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCE
T ss_conf 99999983578778725007885389999999872995110514503113457899678888736340102545537975
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHH
Q ss_conf 89952132033668889898752687521787205555716898886369989998178-87843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~ 290 (310)
+++|||-|-.|.|+.+.++.||++||++|++..+-|-...++.--++-+.-++++..|- +.........+.|..+|+..
T Consensus 353 vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~rissPpi~~pc~yGID~~t~~eLIA~~~~~eei~~~igadsL~ylsle~ 432 (484)
T PRK07272 353 VVMVDDSIVRGTTSRRIVKLLKEAGAKEVHVRIASPELKYPCFYGIDIQTRAELISANHSVEEICDIIGADSLTYLSVDG 432 (484)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 99982541126759999999997799889999689985787556568999899961899999999885997588436999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780409|r 291 LMGEAI 296 (310)
Q Consensus 291 llA~aI 296 (310)
|. +||
T Consensus 433 l~-~ai 437 (484)
T PRK07272 433 LI-ESI 437 (484)
T ss_pred HH-HHH
T ss_conf 99-985
No 64
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.55 E-value=1.9e-07 Score=69.77 Aligned_cols=150 Identities=16% Similarity=0.218 Sum_probs=100.2
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCCC------C--------CCCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-8326767------6--------3210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRREH------P--------GKIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~------~--------~~v~~~~~~gdV~gr~ 211 (310)
.+.+.|.+....+..+|+..-.-|..-|..+|+.+|.|+.. +-|.|.- + -+.+...+-..++||.
T Consensus 265 ~~G~~LA~e~~~~~D~Vi~VPdSg~~aA~gyA~~sgip~~~gliKn~yvgRTFI~p~q~~R~~~v~~Kln~i~~~i~gK~ 344 (489)
T PRK07847 265 EIGRRLAREHPVEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKR 344 (489)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHCEEECCCCCCCEECCCHHHHHHCCCEEEECCHHEECCCE
T ss_conf 99999874378889979856997199999999973995444200146147401378665666365147740264177987
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHH
Q ss_conf 89952132033668889898752687521787205555716898886369989998178-87843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~ 290 (310)
++||||-|-.|.|+.+.++.||+.||++|++..+-|-...++.--++-+.-++++..+- +.........+-|..+|+..
T Consensus 345 vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~~PC~YGID~pt~~ELIA~~~s~eeI~~~igaDSL~ylsle~ 424 (489)
T PRK07847 345 LVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIASPPVKWPCFYGIDFATPAELIANGVTVEAVRRSIGADSLGYISLDG 424 (489)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 99984783566779999999997699889999689985788767447899899963899999999986998688316999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780409|r 291 LMGEAIN 297 (310)
Q Consensus 291 llA~aI~ 297 (310)
|. +|+.
T Consensus 425 L~-~aig 430 (489)
T PRK07847 425 MI-AATE 430 (489)
T ss_pred HH-HHHC
T ss_conf 99-9867
No 65
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.46 E-value=1.8e-06 Score=63.22 Aligned_cols=115 Identities=21% Similarity=0.288 Sum_probs=78.6
Q ss_pred HHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHCCCC-EEEEECCCCC---------------CCCCEEECC----
Q ss_conf 37777876530-58555188516656357899999970997-9998326767---------------632100002----
Q gi|254780409|r 145 LPILERDIKER-NDISNLMVVSPDVGGVVRARALAKRLGCL-LAIVDKRREH---------------PGKIEVMNI---- 203 (310)
Q Consensus 145 ~~~l~~~l~~~-~~~~~~vVVaPD~G~~~ra~~~a~~L~~~-~~~~~K~R~~---------------~~~v~~~~~---- 203 (310)
...|++.+.++ ..++..+|++.-..|...|..+|++||.. +..+.+-|+- +++.+...+
T Consensus 69 ~daLA~~lA~k~~~~~pdvv~GlpTLGl~lA~~Var~LG~~rYVplg~SrKfwy~d~Ls~~vsSITtp~~~krlylDp~~ 148 (233)
T PRK06031 69 LDALAEELAAKARPFRPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYDDELSVPLSSITTPDQGKRLYIDPRM 148 (233)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCEECCCCCCCCCEEEECHHH
T ss_conf 99999999987415698678714655404589999970976367656477533134435510003588877315677444
Q ss_pred CCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHHHHHHHCC
Q ss_conf 454557428995213203366888989875268752178720555571-6898886369
Q gi|254780409|r 204 IGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS-SSIERIEKSK 261 (310)
Q Consensus 204 ~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~-~a~e~l~~s~ 261 (310)
..-++||.|++|||.|+||.|+..+.+.|...|+.-|.+.+ ++.-+ .=.+.+...+
T Consensus 149 lpLl~GrRV~lVDDVISSG~Si~a~l~LL~~~G~e~v~igv--aM~Q~erWre~l~a~g 205 (233)
T PRK06031 149 LPLLRGRRVALIDDVISSGASIVAALRLLATCGIEPAGIGA--AMLQSERWRESLAALG 205 (233)
T ss_pred HHHHCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEE--EEHHHHHHHHHHHHCC
T ss_conf 12432877999821221556599999999975997378876--3214456778775127
No 66
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.46 E-value=2.7e-07 Score=68.81 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=99.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EECCCC------CCC--------CCEEECCCCCCCCCE
Q ss_conf 77787653058555188516656357899999970997999-832676------763--------210000245455742
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI-VDKRRE------HPG--------KIEVMNIIGKVEGKD 211 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~-~~K~R~------~~~--------~v~~~~~~gdV~gr~ 211 (310)
-+.+.|.+..+.+..+|+..-..|..-|-.+|+.+|.|+.. +-|.|. .++ +.+...+...++||.
T Consensus 279 ~lG~~LA~e~~~~~DvV~~VPdSg~~aA~gya~~sgip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~v~gK~ 358 (472)
T PRK05793 279 RAGEQLYKEYPVDADIVIGVPDSGIPAAIGYAKASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKR 358 (472)
T ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCE
T ss_conf 99999873578888879817997599999999861994344012205215557688677897514623232021006986
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHH
Q ss_conf 89952132033668889898752687521787205555716898886369989998178-87843474079859981179
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQ 290 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~ 290 (310)
+++|||-|=.|.|+.+.++.||++||++|++..+-|-...++.--++-+.-++++..|- +.........+-|..+|+..
T Consensus 359 vvlvDDSIVRGtT~k~iv~~Lr~aGakeVh~ri~sPpi~~pc~yGID~~~~~eLiA~~~~~eei~~~igadsL~yls~e~ 438 (472)
T PRK05793 359 VVLIDDSIVRGTTSKRLVESLRRAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIAANMSVEEIREMIGADSLGYLSIEG 438 (472)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECHHH
T ss_conf 99980770557679999999997799989999689996887666557899899975799999999985998688307999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780409|r 291 LMGEAI 296 (310)
Q Consensus 291 llA~aI 296 (310)
|+ +||
T Consensus 439 l~-~ai 443 (472)
T PRK05793 439 LL-ESL 443 (472)
T ss_pred HH-HHH
T ss_conf 99-984
No 67
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=98.44 E-value=1.7e-06 Score=63.47 Aligned_cols=124 Identities=28% Similarity=0.372 Sum_probs=68.2
Q ss_pred CCEEEEECCCCHHHHHH-----CCCCCEECCHHHHHHHHHHHHCC----CCCEEEEECCCCHH----------HHHHHHH
Q ss_conf 77269951583577652-----58862000103777787653058----55518851665635----------7899999
Q gi|254780409|r 118 ADRVIMLDLHAGQVQGF-----FDIPTDNLYALPILERDIKERND----ISNLMVVSPDVGGV----------VRARALA 178 (310)
Q Consensus 118 ~d~vit~DlH~~~~~~~-----F~ip~~nl~~~~~l~~~l~~~~~----~~~~vVVaPD~G~~----------~ra~~~a 178 (310)
.+++..+..+.+.+..+ |.. ..+-.+.|++++..... ..+.+|--|=.-.- ..++.++
T Consensus 65 ~~~~~~~~~Y~~~l~~~i~~~Kf~~---~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~ 141 (225)
T COG1040 65 FERLRSLGSYNGPLRELISQLKFQG---DLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALA 141 (225)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 3025888873199999999865267---1778999999999986511346675997369877887468789999999987
Q ss_pred HHCCCCEEEEECCCCCCCC-----------C-EEECCCCCCCC-CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 9709979998326767632-----------1-00002454557-428995213203366888989875268752178720
Q gi|254780409|r 179 KRLGCLLAIVDKRREHPGK-----------I-EVMNIIGKVEG-KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT 245 (310)
Q Consensus 179 ~~L~~~~~~~~K~R~~~~~-----------v-~~~~~~gdV~g-r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T 245 (310)
..+|.++ +...++..... . ....+.+.++. |+|+||||++.||.|+..+++.|++.||++|.+++.
T Consensus 142 ~~~~~~~-~l~r~k~~~~q~~l~~~~rr~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~l 220 (225)
T COG1040 142 RRLGKPI-ALRRVKDTSPQQGLKALERRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTL 220 (225)
T ss_pred HHHCCCH-HHEECCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 7647642-110000673100455589998460563147876767728999400666799999999999759916999999
No 68
>KOG0572 consensus
Probab=98.35 E-value=1.3e-06 Score=64.31 Aligned_cols=136 Identities=22% Similarity=0.269 Sum_probs=86.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEE-ECCCCC------CC--------CCEEECCCCCCCCCEEEEECHHHCCHHH
Q ss_conf 51885166563578999999709979998-326767------63--------2100002454557428995213203366
Q gi|254780409|r 160 NLMVVSPDVGGVVRARALAKRLGCLLAIV-DKRREH------PG--------KIEVMNIIGKVEGKDCILIDDIVDTGGT 224 (310)
Q Consensus 160 ~~vVVaPD~G~~~ra~~~a~~L~~~~~~~-~K~R~~------~~--------~v~~~~~~gdV~gr~vIIVDDii~TGgT 224 (310)
++|+--||. |..-|-.+|.+.|.||.-. .|.|-- ++ ..+...+-.+++||.++||||-|-.|.|
T Consensus 293 DvVi~VPdS-~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtT 371 (474)
T KOG0572 293 DVVIPVPDS-GTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTT 371 (474)
T ss_pred CEEEECCCC-CHHHHHHHHHHHCCCHHHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCEECCCC
T ss_conf 558857985-0378888888709960552001231351000764788886476650532344078569997365422675
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC-CCCCHHHHCCCCEEEEECHHHHHHHH
Q ss_conf 8889898752687521787205555716898886369989998178-87843474079859981179999999
Q gi|254780409|r 225 LCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS-IQPTDLVKSSAKIRILTIAQLMGEAI 296 (310)
Q Consensus 225 i~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT-i~~~~~~~~~~ki~visva~llA~aI 296 (310)
+...+++||+.||++|+....-|-..-++.--++-+--+++|..+- ++.......++-+..+|+..|+..+=
T Consensus 372 s~~IVkmlreaGAkeVh~riAsPpi~~pc~yGIdipt~keLIA~~~t~deiae~igadsv~ylsve~Lv~~~~ 444 (474)
T KOG0572 372 SSPIVKMLREAGAKEVHIRIASPPIKYPCYYGIDIPTSKELIANKLTVDEIAEHIGADSVAYLSVEGLVDSVQ 444 (474)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECCCCCHHHHHHCCCCHHHHHHHHCCCEEEEEEHHHHHHHHC
T ss_conf 3899999987588578988218864455144247788799975689879999873877068850888886632
No 69
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.33 E-value=2.9e-06 Score=61.92 Aligned_cols=96 Identities=29% Similarity=0.393 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEECC-CCCC----CCCEEE-CCCCC-CCCCEEEEE
Q ss_conf 0377778765305855518851665635789999997099-79998326-7676----321000-02454-557428995
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGC-LLAIVDKR-REHP----GKIEVM-NIIGK-VEGKDCILI 215 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~-~~~~~~K~-R~~~----~~v~~~-~~~gd-V~gr~vIIV 215 (310)
....+++.+++. ++.+.+++++-.||.--|+.+++.|+. ++..+.-. -... ++..+. ...-| ++||.|+||
T Consensus 15 ~~~~lA~kI~~s-~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIV 93 (192)
T COG2236 15 LCRALAEKIRAS-GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIV 93 (192)
T ss_pred HHHHHHHHHHHC-CCCCCEEEEECCCCEEHHHHHHHHHCCCCEEEEEEEEEHHHCCCCCCCEEECCCCCCCCCCCEEEEE
T ss_conf 999999999974-9877689998678602799999986887247999888500112377633612765465589858998
Q ss_pred CHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 2132033668889898752687521
Q gi|254780409|r 216 DDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 216 DDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
||+.|||.||..|.+.|++.....+
T Consensus 94 DDI~DTG~Tl~~a~~~l~~~~p~e~ 118 (192)
T COG2236 94 DDIVDTGETLELALEELKKLAPAEV 118 (192)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 2333761769999999985370666
No 70
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.29 E-value=1.3e-05 Score=57.56 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=82.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHC-CCCEEEEECCCCCC-CCCEE--ECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 55188516656357899999970-99799983267676-32100--0024545574289952132033668889898752
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRL-GCLLAIVDKRREHP-GKIEV--MNIIGKVEGKDCILIDDIVDTGGTLCGAADALYE 234 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L-~~~~~~~~K~R~~~-~~v~~--~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~ 234 (310)
+++++|+.=-.|....+.+.+.+ +++.+.+--+|+.. .+.+. ..+..+++++.|+++|-|+.||||++.|.+.|++
T Consensus 69 ~~i~~V~ILRAGl~m~~~~~~~~P~a~vg~Igi~Rde~T~~p~~yy~kLP~~i~~~~VlllDPmlATG~s~~~ai~~L~~ 148 (208)
T PRK00129 69 KKVVIVPILRAGLGMVDGVLKLIPSARVGHVGAYRDEETLEPVEYLEKLPSDIDERTVIVVDPMLATGGSMIAAIDLLKK 148 (208)
T ss_pred CCEEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHH
T ss_conf 95689986165165889999868875400588995477777067563286444668799878556437669999999996
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 68752178720555571689888636998999817887
Q gi|254780409|r 235 QGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQ 272 (310)
Q Consensus 235 ~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~ 272 (310)
.|+++|.+++. +-+..+++++.+..=+--+.|-.|.
T Consensus 149 ~G~~~I~~v~~--ias~~Gi~~v~~~~P~v~I~ta~iD 184 (208)
T PRK00129 149 RGAKRIKVLCL--VAAPEGIKALEEAHPDVEIYTAAID 184 (208)
T ss_pred CCCCEEEEEEE--EECHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 69973899999--9648999999987879789999837
No 71
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.29 E-value=2.5e-05 Score=55.66 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=92.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HHH---HHHHHHHHH
Q ss_conf 5551885166563578999999709979998326767632100002454557428995213203-366---888989875
Q gi|254780409|r 158 ISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GGT---LCGAADALY 233 (310)
Q Consensus 158 ~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-GgT---i~~aa~~Lk 233 (310)
.+++.|++- .+..+.|+.+|+.||.++.-++.+|...||... .+..+|+|++|+|+-.+... -.. +.-.+.+||
T Consensus 3 ~~~~~lf~g-ss~~~La~~IA~~Lg~~l~~~~~~~F~DGE~~v-~i~e~vrg~dV~ivqs~~~pvnd~lmELll~idAlr 80 (321)
T PRK02269 3 YSDLKLFAL-SSNKELAEKVASAIGIQLGKSTVRQFSDGEIQV-NIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALK 80 (321)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 777599989-999899999999869982422889889998898-757877898089990799995379999999999998
Q ss_pred HCCCCCEEEEEECCCCC-------------HH-HHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 26875217872055557-------------16-89888636998999817887843474079859981179999999987
Q gi|254780409|r 234 EQGALSVTAYITHGVLS-------------SS-SIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 234 ~~GA~~V~~~~THgifs-------------~~-a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
+.||++|+++...--.+ .. -.+.|..+|+++|++-|-..+.-+....-.+.-++.+|++++.|.+.
T Consensus 81 ~a~A~~It~ViPY~~YaRQDr~~~~ge~isak~vA~lL~~~g~d~vitvDlH~~~i~gfF~ipv~~l~~~~~~~~~i~~~ 160 (321)
T PRK02269 81 RASAESISVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRH 160 (321)
T ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCEEECHHHHHHHHHH
T ss_conf 74897399981355313045445789972699999988744877799962674777632699841113038999999984
Q ss_pred H
Q ss_conf 1
Q gi|254780409|r 300 F 300 (310)
Q Consensus 300 ~ 300 (310)
.
T Consensus 161 ~ 161 (321)
T PRK02269 161 G 161 (321)
T ss_pred C
T ss_conf 7
No 72
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.23 E-value=1.5e-05 Score=57.21 Aligned_cols=97 Identities=28% Similarity=0.401 Sum_probs=73.0
Q ss_pred HHHHHHH-HCCCCCEEEEECCCCHHHHHHHHHHHCC------CCEEEEEC--CCCC-------CCCCEEECCCCCCCCCE
Q ss_conf 7787653-0585551885166563578999999709------97999832--6767-------63210000245455742
Q gi|254780409|r 148 LERDIKE-RNDISNLMVVSPDVGGVVRARALAKRLG------CLLAIVDK--RREH-------PGKIEVMNIIGKVEGKD 211 (310)
Q Consensus 148 l~~~l~~-~~~~~~~vVVaPD~G~~~ra~~~a~~L~------~~~~~~~K--~R~~-------~~~v~~~~~~gdV~gr~ 211 (310)
++..+-+ +.+.+|+++++.-.+|+..|+.++++++ +|+..++- .|+. .-....+.+..|+.||.
T Consensus 19 ia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~ 98 (179)
T COG2065 19 IAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDITGKR 98 (179)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999997079985599967428789999999999887377887036876785141331576677656764752446878
Q ss_pred EEEECHHHCCHHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf 89952132033668889898752687-5217872
Q gi|254780409|r 212 CILIDDIVDTGGTLCGAADALYEQGA-LSVTAYI 244 (310)
Q Consensus 212 vIIVDDii~TGgTi~~aa~~Lk~~GA-~~V~~~~ 244 (310)
||+|||..-||.|+-.|.++|.+.|- .+|-++|
T Consensus 99 VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav 132 (179)
T COG2065 99 VILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV 132 (179)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9998201114724999999998649853589999
No 73
>TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765 The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP). UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage.
Probab=98.22 E-value=1.2e-05 Score=57.85 Aligned_cols=111 Identities=18% Similarity=0.298 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHC-CCCEEEEECCCCCCC-CCEEE----CCCCCCCCCEEEEECHHHCCHHHHHHHHH
Q ss_conf 8555188516656357899999970-997999832676763-21000----02454557428995213203366888989
Q gi|254780409|r 157 DISNLMVVSPDVGGVVRARALAKRL-GCLLAIVDKRREHPG-KIEVM----NIIGKVEGKDCILIDDIVDTGGTLCGAAD 230 (310)
Q Consensus 157 ~~~~~vVVaPD~G~~~ra~~~a~~L-~~~~~~~~K~R~~~~-~v~~~----~~~gdV~gr~vIIVDDii~TGgTi~~aa~ 230 (310)
+-++++||..=--|...+..+.+.+ ++..+++--.|+... +-+.. .+.-+.+++++||+|=|..|||||+.|.+
T Consensus 70 ~~~~iv~vPILRAGLgm~dG~~~~~P~A~vG~~G~~R~eeTG~l~~~~Yy~KLP~~~~~~~v~v~DPMLATGgt~~~a~~ 149 (213)
T TIGR01091 70 GKKPIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETGELKPVVYYSKLPEDIDERTVIVLDPMLATGGTMIAALD 149 (213)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99877999610102689999998488771899987736999852025322005434688869997287343058999999
Q ss_pred HHHHCCCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECC
Q ss_conf 8752687521787205555716898886369-98999817
Q gi|254780409|r 231 ALYEQGALSVTAYITHGVLSSSSIERIEKSK-MKELVITD 269 (310)
Q Consensus 231 ~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~-i~~iv~Tn 269 (310)
.||++|+++|.+.+- |=++..++++++.. =-+|++..
T Consensus 150 ~lk~~g~~~I~~~~~--vAAPeG~~~v~~~hpdV~iytA~ 187 (213)
T TIGR01091 150 LLKKRGAKKIKVLSI--VAAPEGIEAVQKAHPDVDIYTAA 187 (213)
T ss_pred HHHHCCCCCEEEEEE--EECHHHHHHHHHHCCCCEEEEEE
T ss_conf 998539994499999--82557899999846994699997
No 74
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.21 E-value=7e-05 Score=52.75 Aligned_cols=134 Identities=22% Similarity=0.152 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCH-H---HHHHHHHHHHHCCCCCEEE
Q ss_conf 65635789999997099799983267676321000024545574289952132033-6---6888989875268752178
Q gi|254780409|r 167 DVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTG-G---TLCGAADALYEQGALSVTA 242 (310)
Q Consensus 167 D~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TG-g---Ti~~aa~~Lk~~GA~~V~~ 242 (310)
-.+....|+.+|+.||.++.-.+.+|...||... .+..+|+|++|+|+-.+.... . -+.-.+.+||+.||++|.+
T Consensus 6 g~~~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v-~i~~~vrg~dV~ivqs~~~p~nd~lmElll~i~A~r~a~A~~It~ 84 (309)
T PRK01259 6 GNANPELAEKIAKRLGIPLGKASVGRFSDGEISV-EINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALRRASAGRITA 84 (309)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEE-EECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 7998899999999869981202788889998898-637887798289986799995177999999999998748871799
Q ss_pred EEECCC-------CC------HHHH-HHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHC
Q ss_conf 720555-------57------1689-88863699899981788784347407985998117999999998718
Q gi|254780409|r 243 YITHGV-------LS------SSSI-ERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFE 301 (310)
Q Consensus 243 ~~THgi-------fs------~~a~-e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~ 301 (310)
+...-- |. ...+ +.|..+|++++++-|-..+.-+....-.+.-++-.|+|++.|+..+.
T Consensus 85 ViPY~~Y~RQDr~~~~re~isak~va~ll~~~G~d~vit~DlH~~qi~gfF~ipvd~l~a~~~l~~~i~~~~~ 157 (309)
T PRK01259 85 VIPYFGYARQDRKASARVPITAKLVANLLSSAGADRVLTVDLHADQIQGFFDIPVDNLYGSPILLEDIKKKNL 157 (309)
T ss_pred ECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCEEEECCHHHHHHHHHCCC
T ss_conf 7246650368777799986759999999852378738998167677754248971167440899999986388
No 75
>PRK01999 consensus
Probab=98.20 E-value=4.8e-05 Score=53.84 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHH---HHHHHHHHHCCCCCEEE
Q ss_conf 665635789999997099799983267676321000024545574289952132033668---88989875268752178
Q gi|254780409|r 166 PDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTL---CGAADALYEQGALSVTA 242 (310)
Q Consensus 166 PD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi---~~aa~~Lk~~GA~~V~~ 242 (310)
.-.+....|+.+|+.||.++.-...+|..+||... .+..+|+|++|+|+-.+......+ .-.+.+||+.||++|++
T Consensus 10 ~gss~~~LA~~ia~~Lg~~l~~~~~~~F~DGE~~v-~i~~~vrg~dV~ivqs~~p~~d~lmELll~~dA~r~~~A~~It~ 88 (311)
T PRK01999 10 SGTNSRYLAEKICASLGCPLGNMNISHFADGEFAV-SYEESIRGADVFLVQSTFPNSDNLMELLLMIDAAKRASARSITA 88 (311)
T ss_pred ECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88998999999999869961312889889998898-61787679838998899998168999999998898658863899
Q ss_pred EEECCCCC-------------HHHH-HHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHC
Q ss_conf 72055557-------------1689-88863699899981788784347407985998117999999998718
Q gi|254780409|r 243 YITHGVLS-------------SSSI-ERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFE 301 (310)
Q Consensus 243 ~~THgifs-------------~~a~-e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~ 301 (310)
+...-=.+ ...+ +.|..+|++++++-|-..+.-+....-.+.-++..|++++.++....
T Consensus 89 ViPY~~YaRQDr~~~~~e~isak~va~lL~~~G~d~vitvDlH~~~i~gfF~ipv~~l~a~~~~~~~~~~~~~ 161 (311)
T PRK01999 89 VIPYFGWARQDRKDKPRVSIGAKLVADLLSVAGIDRLITMDLHADQIQGFFDKPVDHLYASTVFLPYIRSLKL 161 (311)
T ss_pred ECCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 6255443337665689986767774434301578658998268388874479987644375889999996398
No 76
>KOG3367 consensus
Probab=98.20 E-value=7.3e-06 Score=59.28 Aligned_cols=105 Identities=21% Similarity=0.332 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCC-------CCEEE--EECCC----CCCCCCEEEC--CCCCCCC
Q ss_conf 37777876530585551885166563578999999709-------97999--83267----6763210000--2454557
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLG-------CLLAI--VDKRR----EHPGKIEVMN--IIGKVEG 209 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~-------~~~~~--~~K~R----~~~~~v~~~~--~~gdV~g 209 (310)
..-++..+.+.....+.++++.-+||.++...+-++|. .|+.+ +.-+. .+++++.++. ...+++|
T Consensus 46 ~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~ltg 125 (216)
T KOG3367 46 VERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLTG 125 (216)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHCCCCCCCCCEEECCCCHHHHCC
T ss_conf 87763245541277851899983241688999999975024577765044554400214776557851664787777357
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH
Q ss_conf 4289952132033668889898752687521787205555716
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSS 252 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~ 252 (310)
|+|+||+|++|||.||......+++.+++.|.++. +++..
T Consensus 126 K~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas---LL~Kr 165 (216)
T KOG3367 126 KNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS---LLVKR 165 (216)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE---ECCCC
T ss_conf 72899974013561078999988860863114322---00344
No 77
>PRK04117 consensus
Probab=98.17 E-value=9.5e-05 Score=51.86 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HH---HHHHHHHHHHHCCCCCEEEE
Q ss_conf 563578999999709979998326767632100002454557428995213203-36---68889898752687521787
Q gi|254780409|r 168 VGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GG---TLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 168 ~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-Gg---Ti~~aa~~Lk~~GA~~V~~~ 243 (310)
......|+.+|+.||.++.-+.-+|...||... .+..+|+|++|+|+-.+... -. -+.-.+++||+.||++|+++
T Consensus 10 ss~~~La~~ia~~Lg~~l~~~~~~~FpDGE~~v-~i~~~vrg~dV~ivqs~~~p~nd~lmELll~~~a~r~agA~~It~V 88 (309)
T PRK04117 10 SANPEFAKEVSKYLGLPLSKATIKRFSDGEINV-QISESVRGKDVFIIQPTCAPANDNLMELLIMTDALRRSSANSITAV 88 (309)
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 998999999999978983221889889998888-6688778998899917999824889999999999987489738896
Q ss_pred EECCCCC-------------HHHH-HHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 2055557-------------1689-8886369989998178878434740798599811799999999871
Q gi|254780409|r 244 ITHGVLS-------------SSSI-ERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 244 ~THgifs-------------~~a~-e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
...--.+ ...+ +-|...|++++++-|-..+.-+....-.+.-++-++++++.|+.-+
T Consensus 89 iPY~~YsRQDr~~~~ge~isak~vA~lL~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~~~~~i~~~~ 159 (309)
T PRK04117 89 VPYFGYARQDRKAAPRVPITAKLVANLMQAAGIDRVVTMDLHAGQIQGFFDIPVDNLYGSIVFRDYIKSKN 159 (309)
T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCEEECCHHHHHHHHHHC
T ss_conf 03550021444569998701899998886427765899617868874036897330345387789999618
No 78
>PRK02270 consensus
Probab=98.15 E-value=0.00013 Score=50.98 Aligned_cols=141 Identities=11% Similarity=0.145 Sum_probs=94.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HHH---HHHHHHHHH
Q ss_conf 5551885166563578999999709979998326767632100002454557428995213203-366---888989875
Q gi|254780409|r 158 ISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GGT---LCGAADALY 233 (310)
Q Consensus 158 ~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-GgT---i~~aa~~Lk 233 (310)
.+|++++|-. +..+.|+.+|+.||.++.-...+|...||... .+..+|+|++|+||-.+... -.. +.-.+.+||
T Consensus 3 ~~~~~ifsgs-s~~~LA~~IA~~Lg~~l~~~~~~~F~DGE~~v-~i~esvrg~dV~ivqs~~~pvnd~lmELll~idA~r 80 (327)
T PRK02270 3 KENIILFGME-NSIDLAKEISKITNIPLSTIEKTVFADGEVLL-KSKETVRNRDVFIVASTSRPVNENIMELLIFIDSLK 80 (327)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7877999799-98999999999969973122889989998898-427877898089987899993178999999999998
Q ss_pred HCCCCCEEEEEECCCCC-------------HH-HHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 26875217872055557-------------16-89888636998999817887843474079859981179999999987
Q gi|254780409|r 234 EQGALSVTAYITHGVLS-------------SS-SIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 234 ~~GA~~V~~~~THgifs-------------~~-a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
+.||++|+++...--.+ .. -.+.|..+|+++|++-|-..+.-+....-.+.-++..++|++.+..-
T Consensus 81 rasA~~It~ViPY~~YaRQDrk~~~repIsaklvA~lL~~~G~d~vitvDlH~~qiqgfF~iPvd~l~a~~~l~~~i~~~ 160 (327)
T PRK02270 81 RASAKEINVILSYYGYARQDRKSSGRQPIGAKLVADLLEKAGATKIISVDLHNPSIQGFFDIPVDDIKGQYILAKELKKK 160 (327)
T ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCEEEECCHHHHHHHHHC
T ss_conf 73887258971254434477766899863399999988524786478843576888504699730477427879988640
Q ss_pred H
Q ss_conf 1
Q gi|254780409|r 300 F 300 (310)
Q Consensus 300 ~ 300 (310)
.
T Consensus 161 ~ 161 (327)
T PRK02270 161 N 161 (327)
T ss_pred C
T ss_conf 6
No 79
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.15 E-value=0.00011 Score=51.52 Aligned_cols=143 Identities=17% Similarity=0.105 Sum_probs=100.1
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HH---HHHHHHHH
Q ss_conf 585551885166563578999999709979998326767632100002454557428995213203-36---68889898
Q gi|254780409|r 156 NDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GG---TLCGAADA 231 (310)
Q Consensus 156 ~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-Gg---Ti~~aa~~ 231 (310)
+..+++.|++ -.+....|+.+|+.||.++.-+..+|...||... .+..+|+|++|+|+-.+... -. -+.-.+.+
T Consensus 5 ~~~~~~~ifs-gss~~~La~~ia~~Lg~~l~~~~~~~FpDGE~~v-~i~e~Vrg~dV~iiqs~~~p~nd~lmELll~idA 82 (323)
T PRK02458 5 YADKQIKLFS-LNSNLPIAEKIAKAAGIPLGKLSSRQFSDGEIMI-NIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDA 82 (323)
T ss_pred CCCCCEEEEE-CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 5799759997-9999999999999968984121889889998898-6478778983899868998930899999999999
Q ss_pred HHHCCCCCEEEEEECCCC-------------CHHHHHH-HHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHH
Q ss_conf 752687521787205555-------------7168988-86369989998178878434740798599811799999999
Q gi|254780409|r 232 LYEQGALSVTAYITHGVL-------------SSSSIER-IEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAIN 297 (310)
Q Consensus 232 Lk~~GA~~V~~~~THgif-------------s~~a~e~-l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~ 297 (310)
||+.||++|+++...--. +...+-+ |..+|++++++-|-..+.-+....-.+.-++..|++++.+.
T Consensus 83 ~r~agA~~It~ViPY~~YaRQDr~~~~gepIsak~vA~lL~~~G~d~vitvDlH~~~i~gfF~ipv~nl~a~~~~~~~~~ 162 (323)
T PRK02458 83 CKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAEHYS 162 (323)
T ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCEEEEEHHHHHHHH
T ss_conf 98738871899832465454776658998741999999987538865788427818774046897234771099999999
Q ss_pred HHH
Q ss_conf 871
Q gi|254780409|r 298 RTF 300 (310)
Q Consensus 298 ~i~ 300 (310)
...
T Consensus 163 ~~~ 165 (323)
T PRK02458 163 KLG 165 (323)
T ss_pred HHC
T ss_conf 837
No 80
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.13 E-value=0.00011 Score=51.34 Aligned_cols=141 Identities=20% Similarity=0.156 Sum_probs=94.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HHH---HHHHHHHHHH
Q ss_conf 551885166563578999999709979998326767632100002454557428995213203-366---8889898752
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GGT---LCGAADALYE 234 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-GgT---i~~aa~~Lk~ 234 (310)
+|+.|+ .-.+....|+.+|+.||.++.-.+.+|...||... .+..+|+|++|+|+-.+... ... +.-.+.+||+
T Consensus 5 ~~m~i~-sgs~~~~LA~~iA~~Lg~~l~~~~~~~F~DGE~~v-~i~e~vrg~dv~ivqs~~~~~nd~lmELll~idAlr~ 82 (319)
T PRK04923 5 RNLLVF-SGNANKPLAQSICKELGVRMGKALVTRFSDGEVQV-EIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKR 82 (319)
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEE-EECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 757999-78998899999999869961402899889998888-7578757998899937999807899999999999987
Q ss_pred CCCCCEEEEEECCC-------C-------CHHHH-HHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 68752178720555-------5-------71689-888636998999817887843474079859981179999999987
Q gi|254780409|r 235 QGALSVTAYITHGV-------L-------SSSSI-ERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 235 ~GA~~V~~~~THgi-------f-------s~~a~-e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
.||++|+++...-- | +...+ +.|...|++++++-|-..+.-+....-.+.-++..|++++.+.+.
T Consensus 83 a~A~rIt~ViPY~~YsRQDr~~~~g~~pIsak~vA~lL~~~gvdrvitvDlH~~qi~gfF~ipv~~l~a~~~l~~~~~~~ 162 (319)
T PRK04923 83 ASASSVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMICAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRA 162 (319)
T ss_pred CCCCEEEEEECCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 58872799832553200013346676870299999886125876279844887998540599745411729999999984
Q ss_pred HC
Q ss_conf 18
Q gi|254780409|r 300 FE 301 (310)
Q Consensus 300 ~~ 301 (310)
+.
T Consensus 163 ~~ 164 (319)
T PRK04923 163 YG 164 (319)
T ss_pred CC
T ss_conf 59
No 81
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.10 E-value=9.5e-05 Score=51.89 Aligned_cols=133 Identities=20% Similarity=0.207 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHH---HHHHHHHHHHCCCCCEEE
Q ss_conf 66563578999999709979998326767632100002454557428995213203366---888989875268752178
Q gi|254780409|r 166 PDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGT---LCGAADALYEQGALSVTA 242 (310)
Q Consensus 166 PD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgT---i~~aa~~Lk~~GA~~V~~ 242 (310)
+-.+....|+.+|+.||.++.-++.+|...||... .+..+|+|++|+|+-..-..... +.-.+.+||+.||++|++
T Consensus 4 sgss~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v-~i~~~vrg~dV~i~~~~~~~nd~lmELll~i~A~r~a~A~~It~ 82 (286)
T PRK00934 4 GGSGSQNLAAEVAKLLNSELARVETKKFPDGELYV-RVDEELGGEDIVIISTQYPQDENLIELILLLDALRDEGVKSITL 82 (286)
T ss_pred ECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEE-EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 58898999999999869971412889889998899-86887799869999189998479999999999998758973899
Q ss_pred EEECC-------------CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 72055-------------5571689888636998999817887843474079859981179999999987
Q gi|254780409|r 243 YITHG-------------VLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 243 ~~THg-------------ifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
+...- ..+...+-++.++.++++++-|-..+.-+......+.-++..+++++-++..
T Consensus 83 ViPY~~YsRQDr~~~~ge~isak~va~ll~~~~d~vitvDlH~~~i~~fF~~p~~nl~~~~~~~~~~~~~ 152 (286)
T PRK00934 83 VAPYLAYARQDRRFKEGEPISIKALAKVYSSYYDEIITINIHEEHTLEFFDIPFTNLSAMPAIAEYIKEK 152 (286)
T ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8346553346434689986508999999975317469994788788404689831110571458999843
No 82
>PRK01506 consensus
Probab=98.10 E-value=0.00015 Score=50.52 Aligned_cols=140 Identities=20% Similarity=0.166 Sum_probs=93.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HH---HHHHHHHHHHH
Q ss_conf 551885166563578999999709979998326767632100002454557428995213203-36---68889898752
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GG---TLCGAADALYE 234 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-Gg---Ti~~aa~~Lk~ 234 (310)
.++.|++= ....+.|+.+|+.||.++.-+..+|...||... .+..+|+|++|+||-.+... -. -+.-.+.+||+
T Consensus 8 ~~m~ifsg-ss~~~La~~iA~~Lg~~l~~~~~~~F~DGE~~v-ri~~~vrg~dV~ivqs~~~p~nd~lmELll~i~a~r~ 85 (317)
T PRK01506 8 SNLKVFSL-NSNKELAEEIAKHIGVGLGKCSVDRFSDGEVQI-NIEESIRGCDVFIIQSTSAPVNEHIMELLIMIDALKR 85 (317)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97599979-998899999999869983211788879998899-8778778982899858999920899999999999887
Q ss_pred CCCCCEEEEEECCCC-------------CHHH-HHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 687521787205555-------------7168-98886369989998178878434740798599811799999999871
Q gi|254780409|r 235 QGALSVTAYITHGVL-------------SSSS-IERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 235 ~GA~~V~~~~THgif-------------s~~a-~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
.||++|+++...--. +... .+-|..+|++++++-|-..+.-.....-.+.-++-.|++++-++.-.
T Consensus 86 ~gA~~It~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~l~~~~~~~~ 165 (317)
T PRK01506 86 ASAKTINIVIPYYGYARQDRKARSREPITAKLVANLLETAGATRVITLDLHAPQIQGFFDIPIDHLMGVPILSDYFETKG 165 (317)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEEEECHHHHHHHHHCC
T ss_conf 38974899626765243764335887613898887874158853799627848775016998431585088888998548
No 83
>PRK04554 consensus
Probab=98.09 E-value=0.00013 Score=50.95 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HHH---HHHHHHHHH
Q ss_conf 5551885166563578999999709979998326767632100002454557428995213203-366---888989875
Q gi|254780409|r 158 ISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GGT---LCGAADALY 233 (310)
Q Consensus 158 ~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-GgT---i~~aa~~Lk 233 (310)
+++.+|+| -......|+.+|+.||.++.-++-+|...||... .+..+|+|++|+|+-..... -.. +.-.+.+||
T Consensus 4 ~~~~~ifs-gss~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v-~i~esVrg~dV~iiqs~~~~~nd~lmELll~idA~r 81 (327)
T PRK04554 4 YDSLMVFT-GNANPELAQRVVRHLDISLGNASVSKFSDGEVAV-ELLENVRGRDVFILQPTCAPTNDNLMEILTMADALK 81 (327)
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 77579997-8998999999999968984122889889998887-417877898189991799982477999999999998
Q ss_pred HCCCCCEEEEEECCC-------C-C------HHHH-HHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 268752178720555-------5-7------1689-88863699899981788784347407985998117999999998
Q gi|254780409|r 234 EQGALSVTAYITHGV-------L-S------SSSI-ERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298 (310)
Q Consensus 234 ~~GA~~V~~~~THgi-------f-s------~~a~-e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~ 298 (310)
+.||++|+++..+-- | . ...+ +.|..+|++++++-|-..+.-+....-.+.-++.+|++++.|+.
T Consensus 82 ra~A~~It~ViPY~~YaRQDr~~~~gr~pIsak~vA~lL~~~G~d~vitvDlH~~qiqgfF~ipvd~l~a~~~l~~~i~~ 161 (327)
T PRK04554 82 RASAGRITTAIPYFGYARQDRRPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIKQ 161 (327)
T ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 72887279994465643367665788675129999855762598850476268488734368970211121999999986
Q ss_pred HH
Q ss_conf 71
Q gi|254780409|r 299 TF 300 (310)
Q Consensus 299 i~ 300 (310)
-.
T Consensus 162 ~~ 163 (327)
T PRK04554 162 QR 163 (327)
T ss_pred CC
T ss_conf 07
No 84
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.07 E-value=0.00015 Score=50.51 Aligned_cols=141 Identities=18% Similarity=0.109 Sum_probs=98.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC----HHHHHHHHHHH
Q ss_conf 85551885166563578999999709979998326767632100002454557428995213203----36688898987
Q gi|254780409|r 157 DISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT----GGTLCGAADAL 232 (310)
Q Consensus 157 ~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T----GgTi~~aa~~L 232 (310)
+.+++.|+|=. ...+.|+.+|+.||.++.-...+|...||... .+..+|+|++|+|+--+... ==-+.-.+.+|
T Consensus 18 ~~~~~~ifsg~-s~~~La~~Ia~~Lg~~l~~~~~~kF~DGE~~v-~i~esVrg~dV~iiqs~~~pvnd~lmELll~idA~ 95 (331)
T PRK02812 18 DNNRLRLFSGS-SNPALAQEVARYLGIDLGPMIRKRFADGELYV-QIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDAC 95 (331)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 99988999789-99999999999968985340789889998898-65687788769998379998418999999999998
Q ss_pred HHCCCCCEEEEEECCC-------C------CHH-HHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 5268752178720555-------5------716-8988863699899981788784347407985998117999999998
Q gi|254780409|r 233 YEQGALSVTAYITHGV-------L------SSS-SIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298 (310)
Q Consensus 233 k~~GA~~V~~~~THgi-------f------s~~-a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~ 298 (310)
|+.||++|.++...-- | +.. -.+.|..+|++++++-|-..+.-+....-.+.-++..|++++.+..
T Consensus 96 krasA~~It~ViPY~~YaRQDrk~~~re~IsaklvA~lL~~aG~d~vitvDlH~~qiqgfF~iPvd~l~a~~~l~~yi~~ 175 (331)
T PRK02812 96 RRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGVDRVLAMDLHSAQIQGYFDIPCDHIYGSPVLIDYLAS 175 (331)
T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEECCCHHHHHHHH
T ss_conf 77578727998325543556766689998349999978873488758873466288863369974314676067999986
Q ss_pred H
Q ss_conf 7
Q gi|254780409|r 299 T 299 (310)
Q Consensus 299 i 299 (310)
-
T Consensus 176 ~ 176 (331)
T PRK02812 176 K 176 (331)
T ss_pred C
T ss_conf 2
No 85
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.05 E-value=7.2e-05 Score=52.68 Aligned_cols=131 Identities=17% Similarity=0.147 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHC-CCEEEEEEEECCCCEEEEE---ECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 899999999999958-9104448998699707888---567868970899859788804679999999999986172001
Q gi|254780409|r 7 NSNRNLAQEICDYLH-TSLGKASVTYFSDREVFVE---IGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRI 82 (310)
Q Consensus 7 ~~~~~La~~ia~~lg-~~l~~~~~~~F~dGE~~v~---i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~i 82 (310)
.+....|+.+|+.|| .++.-+.-+|=.+.+..+. +..+|.|++|+||-.+...- .. +.-.+.+||+.||++|
T Consensus 157 ~Ga~~ra~~~a~~Lg~~~~~~~~K~R~~~~~~~v~~~~~~gdV~Gr~viIVDDiI~TG-gT---l~~aa~~Lk~~GA~~V 232 (304)
T PRK03092 157 AGRVRVAEKWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTG-GT---IAGAVEALKEAGAKDV 232 (304)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEECCHHHCC-HH---HHHHHHHHHHCCCCEE
T ss_conf 7468999999998679978999702467877537614445676787599977645437-35---9999999986699839
Q ss_pred HHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCC-CCEECCHHHHHHHHHHHHCC
Q ss_conf 1310233011034311256521477765200002677269951583577652588-62000103777787653058
Q gi|254780409|r 83 TGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDI-PTDNLYALPILERDIKERND 157 (310)
Q Consensus 83 t~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~i-p~~nl~~~~~l~~~l~~~~~ 157 (310)
.++...-- ++.....++ ..+|+++|++-|-.- +-.. ... .+.-++.++++++.++..+.
T Consensus 233 ~~~~THgl-------------fs~~A~~rl-~~s~i~~iv~TnTip-~~~~-~~~~ki~~~sva~llAeaI~ri~~ 292 (304)
T PRK03092 233 IIAATHGV-------------LSDPAAERL-KNCGAREVVVTNTLP-IPEE-KRFDKLTVLSIAPLLARAIREVFE 292 (304)
T ss_pred EEEEECCC-------------CCHHHHHHH-HHCCCCEEEEECCCC-CCCC-CCCCCEEEEEHHHHHHHHHHHHHC
T ss_conf 99997934-------------596799999-738998799818803-8620-068982999819999999999866
No 86
>TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=98.04 E-value=2.6e-06 Score=62.26 Aligned_cols=42 Identities=33% Similarity=0.529 Sum_probs=37.5
Q ss_pred CCCCCCCCEEEEECHHHCCHHHHHHHHHHHHH-CCCCCEEEEE
Q ss_conf 24545574289952132033668889898752-6875217872
Q gi|254780409|r 203 IIGKVEGKDCILIDDIVDTGGTLCGAADALYE-QGALSVTAYI 244 (310)
Q Consensus 203 ~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~-~GA~~V~~~~ 244 (310)
..-+++||++|||||++.||.||..+++.|.+ .||.+|..++
T Consensus 162 ~~~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~~~ 204 (207)
T TIGR00201 162 KKKEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQVWS 204 (207)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 3246887558997045101236899999998645700114412
No 87
>PRK02039 consensus
Probab=98.04 E-value=0.00019 Score=49.80 Aligned_cols=140 Identities=20% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HHH---HHHHHHHHHH
Q ss_conf 551885166563578999999709979998326767632100002454557428995213203-366---8889898752
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GGT---LCGAADALYE 234 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-GgT---i~~aa~~Lk~ 234 (310)
++..|+ .-......|+.+|+.||.++.-...+|...||... .+..+|+|++|+|+-.+... ... +.-.+.++|+
T Consensus 4 ~~~~if-sgss~~~LA~~Ia~~Lg~~l~~~~~~~F~DGE~~v-~i~esvrg~dV~ivqs~~~p~nd~lmELll~idA~r~ 81 (316)
T PRK02039 4 DGLMVF-TGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQV-EIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKR 81 (316)
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 887999-79998899999999969973121899889998898-6378768998899928999820789999999999987
Q ss_pred CCCCCEEEEEECCCC--------------CHHH-HHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 687521787205555--------------7168-9888636998999817887843474079859981179999999987
Q gi|254780409|r 235 QGALSVTAYITHGVL--------------SSSS-IERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 235 ~GA~~V~~~~THgif--------------s~~a-~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
.||++|+++...--. +... .+.|..+|++++++-|-..+.-+....-.+.-++..|++++.+.+-
T Consensus 82 a~A~~It~ViPY~~YaRQDr~~~~gr~pisak~vA~ll~~aG~d~vitvDlH~~qi~gfF~iPv~~l~a~~~~~~~~~~~ 161 (316)
T PRK02039 82 ASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQ 161 (316)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEECCHHHHHHHHHH
T ss_conf 38874899842545334776556887653099999876232777048852783888306799700021408888999861
Q ss_pred H
Q ss_conf 1
Q gi|254780409|r 300 F 300 (310)
Q Consensus 300 ~ 300 (310)
.
T Consensus 162 ~ 162 (316)
T PRK02039 162 N 162 (316)
T ss_pred C
T ss_conf 7
No 88
>PRK05259 consensus
Probab=98.03 E-value=9.5e-05 Score=51.89 Aligned_cols=129 Identities=17% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEE-ECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 999999999999589104448998699707888-5678689708998597888046799999999999861720011310
Q gi|254780409|r 8 SNRNLAQEICDYLHTSLGKASVTYFSDREVFVE-IGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVI 86 (310)
Q Consensus 8 ~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~-i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~Vi 86 (310)
+....|+++|+.||.++.-+.-+|-..||..+. +..+|.|++|+|+-.+... ...++ -.+..||+.||++|.+..
T Consensus 169 G~~~ra~~~a~~l~~~~~~~~K~R~~~~~~~~~~~~gdV~Gk~~IIvDDiIdT-GgTl~---~aa~~Lk~~GA~~V~~~~ 244 (310)
T PRK05259 169 GGVVRARALAKRLDAPLAIVDKRRERPGESEVMNVIGDVSGRDCILIDDIVDS-GGTLC---NAAEALLANGANSVTAYI 244 (310)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHC-HHHHH---HHHHHHHHCCCCEEEEEE
T ss_conf 69999999999819967899986068995433454566231248951734416-88999---999999877998699999
Q ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCC-CCCEECCHHHHHHHHHHHH
Q ss_conf 23301103431125652147776520000267726995158357765258-8620001037777876530
Q gi|254780409|r 87 PYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFD-IPTDNLYALPILERDIKER 155 (310)
Q Consensus 87 PY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~-ip~~nl~~~~~l~~~l~~~ 155 (310)
..-- ++...+- .|+.+|+++|++.|---+. ..... -.+..++.+++|++.|+.-
T Consensus 245 THgv-------------fs~~A~~-ri~~s~i~~vvvTdTi~~~-~~~~~~~kl~vlsva~llAeaI~r~ 299 (310)
T PRK05259 245 THGV-------------LSGGAVA-RIASSKLKELVITDSIQPT-EAVNDAPNIRVLSIAPLIGEAIRRT 299 (310)
T ss_pred ECCC-------------CCCHHHH-HHHCCCCCEEEEECCCCCC-HHHHCCCCCEEEEHHHHHHHHHHHH
T ss_conf 7853-------------6856999-9862899789993897888-4570589939998299999999998
No 89
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.02 E-value=0.00022 Score=49.44 Aligned_cols=137 Identities=21% Similarity=0.210 Sum_probs=90.4
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHH---HHHHHHHHHCCC
Q ss_conf 18851665635789999997099799983267676321000024545574289952132033668---889898752687
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTL---CGAADALYEQGA 237 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi---~~aa~~Lk~~GA 237 (310)
++++|-+ +....|+.+|+.||.++.-+..+|...||... .+..+|.|++|+|+-.+.+.-..+ .-.+.+||+.||
T Consensus 3 ~~ifsgs-s~~~LA~~iA~~Lg~~l~~~~~~~F~DGE~~v-~i~e~vrg~dV~iiqs~~~pnd~lmELll~idA~r~a~A 80 (301)
T PRK07199 3 PLLLALP-GNAAAAGRLAAALGVEVGRITLHRFPDGESYV-RLDSGVAGRTVVLVCSLDQPDEKLLPLLFAAEAARELGA 80 (301)
T ss_pred CEEEECC-CCHHHHHHHHHHHCCCCEEEEEEECCCCCEEE-EECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8899679-99999999999969970512899879998899-617987798389988999973889999999999987488
Q ss_pred CCEEEEEECC-------------CCCHHHHHHHHHCCCCEEEECCCCCC-CHHH--HCCCCEEEEECHHHHHHHHHHH
Q ss_conf 5217872055-------------55716898886369989998178878-4347--4079859981179999999987
Q gi|254780409|r 238 LSVTAYITHG-------------VLSSSSIERIEKSKMKELVITDSIQP-TDLV--KSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 238 ~~V~~~~THg-------------ifs~~a~e~l~~s~i~~iv~TnTi~~-~~~~--~~~~ki~visva~llA~aI~~i 299 (310)
++|+++...- ..+....-++..++++++++-|-..+ .... ...-....++..++|++.|+.-
T Consensus 81 ~~It~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~d~vitvDlH~h~~~~i~~ff~ip~~nl~~~~~l~~~i~~~ 158 (301)
T PRK07199 81 RRVVLVAPYLAYMRQDIRFHPGEAISSRHFARLLSGSFDRLITVDPHLHRYHSLSEVYPIPARVLHAAPAIAAWIRAH 158 (301)
T ss_pred CEEEEEECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHCCCCCCCCEEEEECHHHHHHHHHH
T ss_conf 748998156621013223479985108999999985277689970453226775267789817767058789999851
No 90
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP . 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=98.02 E-value=1.4e-05 Score=57.32 Aligned_cols=142 Identities=23% Similarity=0.277 Sum_probs=92.0
Q ss_pred CHH-HHHHHHHHHHC--CCCCEEEEECCCCHHHHHHH--HHHHCCCCE-EEEECCCC-----C-C------CCCE-EECC
Q ss_conf 103-77778765305--85551885166563578999--999709979-99832676-----7-6------3210-0002
Q gi|254780409|r 143 YAL-PILERDIKERN--DISNLMVVSPDVGGVVRARA--LAKRLGCLL-AIVDKRRE-----H-P------GKIE-VMNI 203 (310)
Q Consensus 143 ~~~-~~l~~~l~~~~--~~~~~vVVaPD~G~~~ra~~--~a~~L~~~~-~~~~K~R~-----~-~------~~v~-~~~~ 203 (310)
+.. .-+-+.|.++. ..+..+||.|---|+.-|-. ||+.+|.|+ -.+-|.|- - | ..+. .++.
T Consensus 274 y~aR~~mG~~La~~~~~pveaDvVvPVPDSG~~aA~G~Afa~~sG~PY~EGl~kNRYVGRTF~~P~Q~~R~~~Vr~kLnP 353 (467)
T TIGR01134 274 YYARVRMGEELAEESREPVEADVVVPVPDSGRPAALGLAFAQESGIPYREGLVKNRYVGRTFMMPTQELRELSVRLKLNP 353 (467)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCHHCCEECCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 77899999999997137888763328888860589999999870887025556624301013488878987321121044
Q ss_pred C-CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE-EE----CCCCCH-H--HH-HHHHHC-CCCEE---EECC
Q ss_conf 4-545574289952132033668889898752687521787-20----555571-6--89-888636-99899---9817
Q gi|254780409|r 204 I-GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY-IT----HGVLSS-S--SI-ERIEKS-KMKEL---VITD 269 (310)
Q Consensus 204 ~-gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~-~T----Hgifs~-~--a~-e~l~~s-~i~~i---v~Tn 269 (310)
+ ..++||.|++|||=|=-|.|..+.+++||++||++||+. ++ ||=|=| + +. |.+... ..+++ +..|
T Consensus 354 ~r~~~~GkrVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasPP~~~PC~YGiDmpt~~EL~A~~~~~~e~~~~~GAD 433 (467)
T TIGR01134 354 VRSVVEGKRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASPPVRYPCYYGIDMPTREELAAARHTVEEIRREIGAD 433 (467)
T ss_pred CHHHHCCCEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCC
T ss_conf 30333697589994241207137899999987298389876258888865833353753898731877689887660775
Q ss_pred CCCCCHHHHCCCCEEEEECHHHHHHHHH
Q ss_conf 8878434740798599811799999999
Q gi|254780409|r 270 SIQPTDLVKSSAKIRILTIAQLMGEAIN 297 (310)
Q Consensus 270 Ti~~~~~~~~~~ki~visva~llA~aI~ 297 (310)
|+ ..+|+..|. +|+.
T Consensus 434 sL------------~YLSlegL~-~a~~ 448 (467)
T TIGR01134 434 SL------------AYLSLEGLV-AAVG 448 (467)
T ss_pred EE------------EECCHHHHH-HHHH
T ss_conf 13------------535889999-9853
No 91
>PRK05038 consensus
Probab=98.00 E-value=0.00025 Score=49.11 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC-HHH---HHHHHHHHHHCCCCCEEE
Q ss_conf 6563578999999709979998326767632100002454557428995213203-366---888989875268752178
Q gi|254780409|r 167 DVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT-GGT---LCGAADALYEQGALSVTA 242 (310)
Q Consensus 167 D~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T-GgT---i~~aa~~Lk~~GA~~V~~ 242 (310)
-.+....|+.+|+.||.++.-...+|...||... .+..+|+|++|+|+-.+... ... +.-.+.++|+.||++|++
T Consensus 9 g~s~~~La~~ia~~Lg~~l~~~~~~~F~DGE~~v-~i~~~vrg~dV~ivqs~~~p~nd~lmELll~idA~r~a~A~~It~ 87 (315)
T PRK05038 9 GNATPELAQRIANRLYTSLGDAAVGRFSDGEVSV-QINENVRGGDVFIIQSTCAPTNDNLMELVVMVDALRRASAGRITA 87 (315)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 8998899999999868984020788879998898-878877899589985899995178999999999998738872699
Q ss_pred EEECCCC--------------CHHH-HHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 7205555--------------7168-98886369989998178878434740798599811799999999871
Q gi|254780409|r 243 YITHGVL--------------SSSS-IERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 243 ~~THgif--------------s~~a-~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
+...--. +... .+-|...|++++++-|-..+.-+....-.+.-++..|++++.+...+
T Consensus 88 ViPY~~YaRQDr~~~~g~~pIsak~vA~ll~~~g~d~vitvDlH~~~i~gfF~iPvdnl~a~~~~~~~~~~~~ 160 (315)
T PRK05038 88 VIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQKN 160 (315)
T ss_pred EECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHHEECHHHHHHHHHHHC
T ss_conf 8325432347755568888701999999998538875999658858986345897111104199999999708
No 92
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.98 E-value=0.00029 Score=48.63 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=90.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCH-H---HHHHHHHHHHH
Q ss_conf 5518851665635789999997099799983267676321000024545574289952132033-6---68889898752
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTG-G---TLCGAADALYE 234 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TG-g---Ti~~aa~~Lk~ 234 (310)
.|++++|= ...-+.|+.+|+.||.++.-+.-+|...||... .+..+|+|++|+|+-.....- . -+.-.++++|+
T Consensus 16 ~n~~ifsg-ss~~~LA~~Ia~~Lg~~l~~~~~~~F~DGE~~v-~i~e~VRg~dV~Iiqs~~~pvnd~lmELll~idA~rr 93 (340)
T PRK00553 16 SNHVIFSL-SKAKKLVDSICRKLSMKPGEIVIQKFADGETYI-RFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKR 93 (340)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 86799977-998899999999859974131789879997898-5278768998899878999952689999999999987
Q ss_pred CCCCCEEEEEECCCC-------------CHHH-HHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 687521787205555-------------7168-98886369989998178878434740798599811799999999871
Q gi|254780409|r 235 QGALSVTAYITHGVL-------------SSSS-IERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 235 ~GA~~V~~~~THgif-------------s~~a-~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
.||++|+++...--. +... .+.|..+|++++++-|-..+.-+....-.+..++..++++.-+....
T Consensus 94 asA~~It~ViPY~~YaRQDrk~~~repIsak~vA~lL~~~G~drvitvDlH~~qiqgfF~iPvd~l~a~~~~~~~~~~~~ 173 (340)
T PRK00553 94 GSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELL 173 (340)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 07882699966666554787678999843999985676358856998435658885216998652106288999999864
No 93
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=97.85 E-value=0.00041 Score=47.64 Aligned_cols=138 Identities=25% Similarity=0.241 Sum_probs=62.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHH----HHHHHHHHHHHCC
Q ss_conf 188516656357899999970997999832676763210000245455742899521320336----6888989875268
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGG----TLCGAADALYEQG 236 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGg----Ti~~aa~~Lk~~G 236 (310)
..+++- .....+|+.+++.|+.++.-..-+|...||.. ..+..+|.|++|.|+........ -+.-.+.+||+.|
T Consensus 5 ~~if~g-~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~-V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~as 82 (314)
T COG0462 5 MKIFSG-SSNPELAEKIAKRLGIPLGKVEVKRFPDGEIY-VRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRAS 82 (314)
T ss_pred EEEEEC-CCCHHHHHHHHHHHCCCCCCCEEEECCCCCEE-EEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 599977-88789999999860998534247786999689-9842652687699990899986889999999999988658
Q ss_pred CCCEEEEEECC-------CC------CHHH-HHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 75217872055-------55------7168-98886369989998178878434740798599811799999999871
Q gi|254780409|r 237 ALSVTAYITHG-------VL------SSSS-IERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 237 A~~V~~~~THg-------if------s~~a-~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
|++|.++.--- .| +... .+.|..+|+++|++.|-..+.-+....-.+.-+.-.|++++-++..+
T Consensus 83 A~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~ 160 (314)
T COG0462 83 AKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY 160 (314)
T ss_pred CCEEEEEEECCHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 865899931651322576568999772999999999729986999707865655667884036404599999999736
No 94
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.81 E-value=0.00019 Score=49.94 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=83.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEECCCCC-CCCCEE--ECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 551885166563578999999709-979998326767-632100--0024545574289952132033668889898752
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLG-CLLAIVDKRREH-PGKIEV--MNIIGKVEGKDCILIDDIVDTGGTLCGAADALYE 234 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~-~~~~~~~K~R~~-~~~v~~--~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~ 234 (310)
.++++|+.=-.|......+.+.+- +..+.+--.|+. +.+... ..+.-|.++|++|++|=|..||||++.|.+.|++
T Consensus 70 ~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~ 149 (210)
T COG0035 70 KKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKK 149 (210)
T ss_pred CCEEEEEEEECCCCHHHHHHHHCCCCEEEEEEEEECCCCCCEEHHHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHH
T ss_conf 82799998624542889999869766388988884376676003587589864688599978614126769999999997
Q ss_pred C-CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 6-8752178720555571689888636998999817887
Q gi|254780409|r 235 Q-GALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQ 272 (310)
Q Consensus 235 ~-GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~ 272 (310)
. |+++|.+.|- +-++..++++.++.=+=-+.|-++.
T Consensus 150 ~G~~~~I~~v~~--vAapeGi~~v~~~~p~v~I~ta~iD 186 (210)
T COG0035 150 RGGPKNIKVVSL--VAAPEGIKAVEKAHPDVEIYTAAID 186 (210)
T ss_pred HCCCCEEEEEEE--EECHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 189752899999--9648999999986899759999804
No 95
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=97.81 E-value=9.3e-05 Score=51.92 Aligned_cols=87 Identities=26% Similarity=0.413 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCE-EEE-ECCCCC--CCCCEEECCCCCCCCCEEEEECHHHC
Q ss_conf 37777876530585551885166563578999999709979-998-326767--63210000245455742899521320
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLL-AIV-DKRREH--PGKIEVMNIIGKVEGKDCILIDDIVD 220 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~-~~~-~K~R~~--~~~v~~~~~~gdV~gr~vIIVDDii~ 220 (310)
...|++-+.+.. +...||+.-.||.--|..+++.||.+. ..+ -+.++. .++..... ..+..|+.++||||++|
T Consensus 19 ~~~LA~kI~~~~--~~d~IV~IaRGGliPA~~ls~~L~i~~i~~i~v~~Y~~~~~~~~~v~~-~~~~~gkkVLIVDDI~D 95 (156)
T PRK09177 19 ARALAWRLLPAG--QWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLK-AAEGDGEGFLVVDDLVD 95 (156)
T ss_pred HHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEEC-CCCCCCCEEEEEECCCC
T ss_conf 999999998508--986699991478315999999859840579999961566556542541-67777862899953436
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 33668889898752
Q gi|254780409|r 221 TGGTLCGAADALYE 234 (310)
Q Consensus 221 TGgTi~~aa~~Lk~ 234 (310)
||.|+..+-+.+.+
T Consensus 96 TG~Tl~~vk~~~~~ 109 (156)
T PRK09177 96 TGGTARAVREMYPK 109 (156)
T ss_pred CCHHHHHHHHHCCC
T ss_conf 63789999986788
No 96
>PRK01132 consensus
Probab=97.80 E-value=0.00067 Score=46.24 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHH---HHHHHHHHCCCCCEEEEE
Q ss_conf 56357899999970997999832676763210000245455742899521320336688---898987526875217872
Q gi|254780409|r 168 VGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLC---GAADALYEQGALSVTAYI 244 (310)
Q Consensus 168 ~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~---~aa~~Lk~~GA~~V~~~~ 244 (310)
..+...|+.+|+.||.++.-+..+|...||... .+..+|+|++|+|+-.... -..++ -.+.+||+.||++|+++.
T Consensus 7 ss~~~LA~~ia~~Lg~~l~~~~~~~F~DGE~~v-~i~~~vrg~dV~iv~s~~~-n~~lmELll~idAlr~~~A~rIt~Vi 84 (286)
T PRK01132 7 SSSMKLASSLAEKLNAEIVNPTERRFPDGELYV-RYDTDLKGRDVFIIGNTHH-DAELIEMILLLSAAYDYKPKSVNIIA 84 (286)
T ss_pred CCCHHHHHHHHHHHCCCEECEEEEECCCCCEEE-EECCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 888999999999969970341889889997899-8378768987999888999-77699999999999874887279982
Q ss_pred ECC-------------CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 055-------------55716898886369989998178878434740798599811799999999871
Q gi|254780409|r 245 THG-------------VLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 245 THg-------------ifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
..- ..+...+-++.++..+++++-|-..+.-.......+.-++..+++++-++...
T Consensus 85 PY~~YsRQDr~~~~ge~isak~vA~ll~~~~d~vitvDlH~~~i~~ff~ip~~nl~a~~~l~~~~~~~~ 153 (286)
T PRK01132 85 PYYGYARQHQRYNPGEPISSQIFTEIIESYSDSIATVDIHDEETLSYSKVPFTDLHAYDSIADYYKNVD 153 (286)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 465423323235898963099999998741666999824605654026897456540089999987338
No 97
>PRK09213 purine operon repressor; Provisional
Probab=97.57 E-value=0.0015 Score=43.95 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=79.6
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC--------------CCCEEECCCCC--CCC
Q ss_conf 77778765305855518851665635789999997099799983267676--------------32100002454--557
Q gi|254780409|r 146 PILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHP--------------GKIEVMNIIGK--VEG 209 (310)
Q Consensus 146 ~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~--------------~~v~~~~~~gd--V~g 209 (310)
.++|..+.+ .+-..|+....-|++.|...|..||+|+.++.|+..-+ ++++.+.+--. -+|
T Consensus 120 ~~fA~~f~~---~~id~VmTveTkGIplA~~vA~~L~VP~Vi~Rk~~kvTeG~tvsinYvSgss~ri~tM~Lskr~L~~g 196 (274)
T PRK09213 120 RIIASAFAD---KKIDAVMTVATKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEG 196 (274)
T ss_pred HHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEHHHCCCC
T ss_conf 999987515---59988999833586189999998099899997678876797089999963665189999876336999
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHCCCCEEEECCCC
Q ss_conf 42899521320336688898987526875217872055557--168988863699899981788
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLS--SSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs--~~a~e~l~~s~i~~iv~TnTi 271 (310)
-.|+||||--..|||+....+.++|.||.-+-+ |+|. ....+|+-+.... ++.-+.+
T Consensus 197 srVLiIDDFmk~Ggt~~Gm~~L~~Ef~a~vvGi----gV~ie~~~~~~klV~dY~S-L~~l~~v 255 (274)
T PRK09213 197 SNVLIVDDFMKAGGTINGMISLLKEFDAEVVGI----GVLVENKEPEERLVDDYVS-LLKLSEV 255 (274)
T ss_pred CEEEEECHHHHCCCHHHHHHHHHHHCCCEEEEE----EEEEECCCCHHHHHHHEEE-EEEEEEC
T ss_conf 839998345447608899999999719879789----9999548803300221014-6897401
No 98
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.52 E-value=0.0019 Score=43.19 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=124.1
Q ss_pred CCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCC
Q ss_conf 20011310233011034311256521477765200002677269951583577652588620001037777876530585
Q gi|254780409|r 79 ARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDI 158 (310)
Q Consensus 79 A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~ 158 (310)
++.+.--+--|-|-||-.-.+ +.+ +|+ ..+..+|+....-.+-|.-|. +-... .+.+.+ .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~--~m 121 (443)
T PTZ00145 61 AKHMKNDLKNFLFFRQPNGDN--EML-------FLN----KAISFCDIGKKNKNNGFHHPL---WRSEE-KRPFEK--KM 121 (443)
T ss_pred HHHHHHHHHHHEEECCCCCCC--EEE-------EEC----CCEEEEECCCCCCCCCCCCCC---CCCCC-CCCHHH--CC
T ss_conf 888888776546725548987--057-------631----644675147756566656832---11333-585234--26
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCH-HH---HHHHHHHHHH
Q ss_conf 5518851665635789999997099799983267676321000024545574289952132033-66---8889898752
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTG-GT---LCGAADALYE 234 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TG-gT---i~~aa~~Lk~ 234 (310)
+|.++.|=.. --..|+.+|+.||++++-+.-+|...||+.. .+..+|+|+||.|+--.+.-- .. +.-.+.++|.
T Consensus 122 ~n~iiFSG~s-np~La~~Ia~~Lg~~LG~~~l~rFsDGEi~V-~i~EsVRG~DVfIIQSt~~PvNdnLMELLImIDA~KR 199 (443)
T PTZ00145 122 ENAILFSGSS-NPLLSKDIADHLGTILGRVHLKRFADGEVSM-QFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRR 199 (443)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHCCCCCCEEEEECCCCCEEE-EECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7659996899-9899999999868963110241006970899-8646324784799899999820369999999999766
Q ss_pred CCCCCEEEEEECCCCC-------------HH-HHHHHHHCCCCEEEECCCCCCCHHHHCC--CCEEEEECHHHHHHHHHH
Q ss_conf 6875217872055557-------------16-8988863699899981788784347407--985998117999999998
Q gi|254780409|r 235 QGALSVTAYITHGVLS-------------SS-SIERIEKSKMKELVITDSIQPTDLVKSS--AKIRILTIAQLMGEAINR 298 (310)
Q Consensus 235 ~GA~~V~~~~THgifs-------------~~-a~e~l~~s~i~~iv~TnTi~~~~~~~~~--~ki~visva~llA~aI~~ 298 (310)
++|++|+++...-=.+ .. --..|..+|+++|++.|-..++-+.... =.+.-+...|++++-+.+
T Consensus 200 ASA~rITAVIPYfGYARQDRK~~~R~PISAKlVAnLL~~aGaDRVITmDLHa~QIQGFFd~nIPVDnL~a~pll~~y~~~ 279 (443)
T PTZ00145 200 ASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTK 279 (443)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 15674699914775246878789998705999999998639884999706856762425899862136524767999984
Q ss_pred HH
Q ss_conf 71
Q gi|254780409|r 299 TF 300 (310)
Q Consensus 299 i~ 300 (310)
..
T Consensus 280 ~~ 281 (443)
T PTZ00145 280 KD 281 (443)
T ss_pred CC
T ss_conf 59
No 99
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=97.37 E-value=0.0015 Score=43.94 Aligned_cols=121 Identities=27% Similarity=0.360 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCC--CCCCCEEECCCC--------------C
Q ss_conf 103777787653058555188516656357899999970997999832676--763210000245--------------4
Q gi|254780409|r 143 YALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRRE--HPGKIEVMNIIG--------------K 206 (310)
Q Consensus 143 ~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~--~~~~v~~~~~~g--------------d 206 (310)
....+|+.+|.++. . .+|+.-..-|++.|...|+-||+|+.+++|-.. ....|++..+-| .
T Consensus 115 ki~~ila~~F~d~~-I--D~V~TV~TKGvPLA~~~A~~LnV~lvivRkD~kvTEGStVSiNYVSGssG~~I~~M~LarrS 191 (269)
T TIGR01743 115 KIGKILASVFIDKE-I--DAVMTVETKGVPLAYAVAKVLNVPLVIVRKDSKVTEGSTVSINYVSGSSGDRIQKMSLARRS 191 (269)
T ss_pred HHHHHHHHHCCCCC-C--CEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 78888754326855-7--87899521882389899876496179998468121053289955676874367888888888
Q ss_pred C-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH--HHHHHHHHCCCCEEEECCCC
Q ss_conf 5-57428995213203366888989875268752178720555571--68988863699899981788
Q gi|254780409|r 207 V-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS--SSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 207 V-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~--~a~e~l~~s~i~~iv~TnTi 271 (310)
+ +|-.|+||||=.-.|||+-.-++.|+|-.|.=+-+ |+|.. ...+++.+.++.=+.++| |
T Consensus 192 Lk~GS~vL~vDDFmkaGGT~~Gm~~LL~EFda~l~Gi----GVli~~~~~~~~~~~~Y~SLl~~~~-i 254 (269)
T TIGR01743 192 LKKGSKVLIVDDFMKAGGTVKGMIELLKEFDAELAGI----GVLIDNEESEEKLVDDYVSLLKLKN-I 254 (269)
T ss_pred HHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE----EEEEECCCCCCCHHHCCEEEEEEEE-E
T ss_conf 8608908999535554870267888887627110232----2133235531000102444678777-5
No 100
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.63 E-value=0.07 Score=32.86 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEE-C---CCCEEE---EE-ECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 68999999999999589104448998-6---997078---88-5678689708998597888046799999999999861
Q gi|254780409|r 6 GNSNRNLAQEICDYLHTSLGKASVTY-F---SDREVF---VE-IGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRS 77 (310)
Q Consensus 6 g~~~~~La~~ia~~lg~~l~~~~~~~-F---~dGE~~---v~-i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~ 77 (310)
-.+.-.-|+..|+.||.+++-+..+| + .+|+-. .. +..+|+||+++|+--+.... .. ++-.+.+||+.
T Consensus 216 D~Ggv~RA~~~A~~L~~~laii~KrR~~s~v~~~~n~i~~~~~lggdV~GK~~IIvDDmIdTg-gT---l~~aA~~Lk~~ 291 (381)
T PRK06827 216 DTGAMDRAKYYSSVLKVPLGLFYKRRDYSTVVNGKNPIVVHELLGRDVEGKDVFIVDDMIASG-GS---VLDAAKELKSR 291 (381)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCC-HH---HHHHHHHHHHC
T ss_conf 997389999999971989899997646764456678436752413556798899972431452-68---99999999987
Q ss_pred CCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECC--CCHHHHHHCCCC-CEECCHHHHHHHHHHH
Q ss_conf 7200113102330110343112565214777652000026772699515--835776525886-2000103777787653
Q gi|254780409|r 78 SARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDL--HAGQVQGFFDIP-TDNLYALPILERDIKE 154 (310)
Q Consensus 78 ~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~Dl--H~~~~~~~F~ip-~~nl~~~~~l~~~l~~ 154 (310)
||++|.+...+=-. . + ...-+-+.++..-.++|++-|. +.+.. -..| ...++.++++++.++.
T Consensus 292 GA~~V~a~aTHgvf-------S-~---a~e~~~~~~e~~~i~~vvvTNti~~~~~l---~~~~ki~vlsva~llAeaI~r 357 (381)
T PRK06827 292 GAKKIICAVSFPFF-------T-E---GLEKFDKAYEEGYIYRIIGTNLVYHPEEL---KSKPWYTEADVSELFARIIFR 357 (381)
T ss_pred CCCEEEEEEECHHC-------C-C---HHHHHHHHHHCCCCCEEEECCCCCCCHHH---HCCCCEEEEEHHHHHHHHHHH
T ss_conf 99889999973660-------4-7---69999764542886489977999899678---158983998869999999999
Q ss_pred H
Q ss_conf 0
Q gi|254780409|r 155 R 155 (310)
Q Consensus 155 ~ 155 (310)
-
T Consensus 358 I 358 (381)
T PRK06827 358 L 358 (381)
T ss_pred H
T ss_conf 8
No 101
>TIGR01744 XPRTase xanthine phosphoribosyltransferase; InterPro: IPR010079 This entry represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; Bacillus subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.; GO: 0016763 transferase activity transferring pentosyl groups, 0043101 purine salvage, 0046110 xanthine metabolic process.
Probab=95.98 E-value=0.087 Score=32.24 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC--C--------------CCEEECCCCC-
Q ss_conf 37777876530585-5518851665635789999997099799983267676--3--------------2100002454-
Q gi|254780409|r 145 LPILERDIKERNDI-SNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHP--G--------------KIEVMNIIGK- 206 (310)
Q Consensus 145 ~~~l~~~l~~~~~~-~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~--~--------------~v~~~~~~gd- 206 (310)
+..+++.|.+++.. -..=|+....-|+.=|=-.|-.||+|+.|..|+++.+ + ++.. -+-++
T Consensus 35 m~~vG~~Fa~~Fa~~g~tKilTIE~SGIAPAiM~a~~l~vP~vFakK~kp~Tl~~~~lta~~~SfTK~~~~~v-~vS~~f 113 (191)
T TIGR01744 35 MREVGEEFARRFADKGITKILTIEASGIAPAIMTALELGVPVVFAKKKKPLTLTDQLLTASVHSFTKSKTSTV-IVSKEF 113 (191)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCEEEE-EEECCC
T ss_conf 9999999998511158974999801584178898785499769998278987656816899999863867999-986143
Q ss_pred C-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHCCC
Q ss_conf 5-57428995213203366888989875268752178720-55557168988863699
Q gi|254780409|r 207 V-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT-HGVLSSSSIERIEKSKM 262 (310)
Q Consensus 207 V-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T-Hgifs~~a~e~l~~s~i 262 (310)
+ ..-+|+|+||=...|++.....+..+++||+=+-.-+. ===|-++ .++|.+.++
T Consensus 114 L~~~D~vl~IDDFLA~G~a~~gL~~i~~qA~A~~~G~G~viEK~Fq~G-r~~L~~~g~ 170 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGDAARGLVDIAEQAGAKIAGIGIVIEKSFQNG-RQELEELGV 170 (191)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCC-HHHHHHCCC
T ss_conf 789988999951346661678899999861995885447998145784-699984899
No 102
>KOG1017 consensus
Probab=94.18 E-value=0.15 Score=30.66 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=49.7
Q ss_pred ECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC-HHHHHHH-HHCCCCEEEECCCCCCCH
Q ss_conf 00245455742899521320336688898987526875217872055557-1689888-636998999817887843
Q gi|254780409|r 201 MNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLS-SSSIERI-EKSKMKELVITDSIQPTD 275 (310)
Q Consensus 201 ~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs-~~a~e~l-~~s~i~~iv~TnTi~~~~ 275 (310)
.....|+..|.|++.=-+++||.|+++|++.|+++|.-.-..+... +|+ +-+.+.+ ++-+--.|++++-.|.-+
T Consensus 181 ArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~s-LF~tP~gak~i~~~fP~itiltseihpvaP 256 (267)
T KOG1017 181 ARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVS-LFITPTGAKNITRKFPYITILTSEIHPVAP 256 (267)
T ss_pred EECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE-EECCCHHHHHHHHHCCEEEEEEECCEECCC
T ss_conf 7469852321689984130478138999999998199960089877-431650567888759736998401201476
No 103
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=90.31 E-value=0.7 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCEEEEECCCCHHH-HHHCCCCCEECCHHHHHHHHHHH
Q ss_conf 77269951583577-65258862000103777787653
Q gi|254780409|r 118 ADRVIMLDLHAGQV-QGFFDIPTDNLYALPILERDIKE 154 (310)
Q Consensus 118 ~d~vit~DlH~~~~-~~~F~ip~~nl~~~~~l~~~l~~ 154 (310)
.|-|+-|=+|.... +-=|| -+.+|++.+.+
T Consensus 113 ~D~IvPVPlh~~R~~~RGfN-------Qa~~lA~~la~ 143 (227)
T PRK11595 113 PDRIVSVPLWQRRHWRRGFN-------QSDLLCRPLAH 143 (227)
T ss_pred CCEEEECCCCHHHHHHCCCC-------HHHHHHHHHHH
T ss_conf 78487238998999873788-------89999999999
No 104
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=88.92 E-value=1.1 Score=25.06 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEECCCCEE-----EEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999999999999589104448998699707-----888567868970899859788804679999999999986172001
Q gi|254780409|r 8 SNRNLAQEICDYLHTSLGKASVTYFSDREV-----FVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRI 82 (310)
Q Consensus 8 ~~~~La~~ia~~lg~~l~~~~~~~F~dGE~-----~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~i 82 (310)
+.-+||..+|..|+.+++--.-++|.-.|. .-+.-.+|.|++|+||--.-.. ...+-| .++++|.+||+.+
T Consensus 97 ~GIPlAt~vA~~l~~~l~iy~P~k~~~~e~~~~G~~s~nfa~V~Gk~VlIVDDViTT-G~T~~e---~ie~l~~~Ga~vv 172 (201)
T PRK02277 97 SGVPLATLMADELGKDLAIYHPKKHQHDEGKKTGSISRNFASVAGKRCVIVDDVITS-GNTMKE---TIEYLKEHGAKPV 172 (201)
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC-CCCHHH---HHHHHHHCCCEEE
T ss_conf 684189999998527611561355566667877621341034378789999702377-824999---9999998699799
Q ss_pred H
Q ss_conf 1
Q gi|254780409|r 83 T 83 (310)
Q Consensus 83 t 83 (310)
-
T Consensus 173 ~ 173 (201)
T PRK02277 173 A 173 (201)
T ss_pred E
T ss_conf 9
No 105
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=88.73 E-value=0.84 Score=25.70 Aligned_cols=64 Identities=23% Similarity=0.405 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECH
Q ss_conf 778765305855518851665---6357899999970997999832676763210000245455742899521
Q gi|254780409|r 148 LERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDD 217 (310)
Q Consensus 148 l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDD 217 (310)
||.++.-...-.++.+++-|. ||+.--+.||+.||+|+-.+.... +......+.+++++|++|-
T Consensus 214 LAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~------~l~~~l~~~~~~d~IlIDT 280 (282)
T TIGR03499 214 LAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPK------ELAKALERLRDKDLILIDT 280 (282)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHH------HHHHHHHHCCCCCEEEEEC
T ss_conf 999999973899679998077767899999999999597489939999------9999998657989999819
No 106
>PRK10200 putative racemase; Provisional
Probab=88.67 E-value=2.1 Score=23.07 Aligned_cols=188 Identities=14% Similarity=0.122 Sum_probs=97.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCC--CCHHHHHCCCCCHHHCCCCCCCCCCHH--HHHHHHHHEECCCCEEEEE
Q ss_conf 089985978880467999999999998617--200113102330110343112565214--7776520000267726995
Q gi|254780409|r 49 DVFIVQSTSCPANDYLMELLIMIDAVRRSS--ARRITGVIPYFGYCRQDRKPSPRTPIS--AKLVANLITQAGADRVIML 124 (310)
Q Consensus 49 dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~--A~~it~ViPY~~YaRqDr~~~~~e~is--ak~~a~ll~~~G~d~vit~ 124 (310)
.+=|+.-+.+..--.+++.+.-.-..+..+ ...+.+-.|-|+=-.+-.....+++.. ..-.|+-|+.+|+|.++..
T Consensus 3 ~IGIlGGmGp~AT~~yy~~i~~~t~a~~~~~h~~~l~~~s~~~~~~~~~~~~~~~d~~~~~L~~~a~~Le~aGAd~i~i~ 82 (230)
T PRK10200 3 TIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLC 82 (230)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 78982667989999999999999988718978872112278857799988679965399999999999998499999964
Q ss_pred C--CC--CHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHH-HHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 1--58--3577652588620001037777876530585551885166563-5789-999997099799983267676321
Q gi|254780409|r 125 D--LH--AGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGG-VVRA-RALAKRLGCLLAIVDKRREHPGKI 198 (310)
Q Consensus 125 D--lH--~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~-~~ra-~~~a~~L~~~~~~~~K~R~~~~~v 198 (310)
- .| .+++|...++|+-|+ ....++++++. +.+++-+.+...-= ..+- ..+++++|....+-+ .....
T Consensus 83 cNTaH~~~d~i~~~~~iP~l~i--~~~t~~~i~~~-g~~~VglLgT~~Tm~~~~Y~~~l~~~~gi~~v~P~----~~~q~ 155 (230)
T PRK10200 83 TNTMHKVADAIESRCSLPFLHI--ADATGRAIAGA-GMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPE----ADERA 155 (230)
T ss_pred CCHHHHHHHHHHHHCCCCEEEH--HHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHCCCEEECCC----HHHHH
T ss_conf 7478999999997569987318--99999999975-99858985145666616889999985798586799----99999
Q ss_pred EEECCC-CCC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEEC-CCC
Q ss_conf 000024-545-574289952132033668889898752687521787205-555
Q gi|254780409|r 199 EVMNII-GKV-EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITH-GVL 249 (310)
Q Consensus 199 ~~~~~~-gdV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~TH-gif 249 (310)
.++..+ .++ +|. +.+ .+-..+...++.|.++||..|.+.||- +++
T Consensus 156 ~v~~~I~~~l~~g~----~~~--~~r~~~~~~~~~L~~~Ga~~vIlgCTElpll 203 (230)
T PRK10200 156 KINQIIFEELCLGQ----FTE--ASRAYYAQVIARLAEQGAQGVIFGCTEIGLL 203 (230)
T ss_pred HHHHHHHHHHHCCC----CCH--HHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 99999999998188----877--8899999999999978999999905778882
No 107
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=88.48 E-value=0.83 Score=25.73 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE----------------ECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 5455742899521320336688898987526875217872----------------055557168988863699899981
Q gi|254780409|r 205 GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI----------------THGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 205 gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~----------------THgifs~~a~e~l~~s~i~~iv~T 268 (310)
|=+|+|.+ |.|++.-.+..|+.+.+.-+-.. .-|--+..-++.|.++|.++|.+-
T Consensus 312 glikn~yv---------gRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~r 382 (471)
T PRK06781 312 GLIKNRYV---------GRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVR 382 (471)
T ss_pred CEEECCCC---------CCCCCCCCHHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 30100201---------443538758899876530110410004898899981660557569999999997799889999
Q ss_pred CCCCCC
Q ss_conf 788784
Q gi|254780409|r 269 DSIQPT 274 (310)
Q Consensus 269 nTi~~~ 274 (310)
-+-||.
T Consensus 383 i~sPpi 388 (471)
T PRK06781 383 IASPPL 388 (471)
T ss_pred ECCCCC
T ss_conf 689985
No 108
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.46 E-value=2.2 Score=22.98 Aligned_cols=121 Identities=10% Similarity=0.131 Sum_probs=68.8
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHH--C
Q ss_conf 77778765305855518851665---635789999997099799983267676321000024545574289952132--0
Q gi|254780409|r 146 PILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIV--D 220 (310)
Q Consensus 146 ~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii--~ 220 (310)
.-++.+++++ ..++.+++-|. ||+..-+.+++.+|+|+-..+...+-..-..........++.|+|++|-.= .
T Consensus 18 aKLA~~~~~~--~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~IlIDTaGr~~ 95 (173)
T cd03115 18 AKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQ 95 (173)
T ss_pred HHHHHHHHHC--CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9999999976--99289997488757799999999997498599227755879999999999875689989997888787
Q ss_pred -CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH---HHH-HCCCCEEEECC
Q ss_conf -33668889898752687521787205555716898---886-36998999817
Q gi|254780409|r 221 -TGGTLCGAADALYEQGALSVTAYITHGVLSSSSIE---RIE-KSKMKELVITD 269 (310)
Q Consensus 221 -TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e---~l~-~s~i~~iv~Tn 269 (310)
-..-+.+..+.++......++++.. +.-..++.+ ++. ..+++.+|.|-
T Consensus 96 ~d~~~~~el~~l~~~~~p~~~~LVl~-a~~~~~~~~~~~~f~~~~~~~~~I~TK 148 (173)
T cd03115 96 IDENLMEELKKIKRVVKPDEVLLVVD-AMTGQDAVNQAKAFNEALGITGVILTK 148 (173)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999999986448972157424-655065899999987427997899971
No 109
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=87.45 E-value=2.5 Score=22.58 Aligned_cols=111 Identities=25% Similarity=0.335 Sum_probs=73.3
Q ss_pred HHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 5200002677269951583577652588620001037777876530-585551885166563578999999709979998
Q gi|254780409|r 110 ANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKER-NDISNLMVVSPDVGGVVRARALAKRLGCLLAIV 188 (310)
Q Consensus 110 a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~-~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~ 188 (310)
.+-|...|+..++ +|+-+- =+|-++-++.|.+-+|+.+- ...-..+|+|= +..+|+..++..||++|.+-
T Consensus 20 ~~~L~~~Gikgvi-~DlDNT------Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 20 PDILKAHGIKGVI-LDLDNT------LVPWDNPDATPELRAWLAELKEAGIKVVVVSN--NKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred HHHHHHCCCCEEE-EECCCC------EECCCCCCCCHHHHHHHHHHHHCCCEEEEEEC--CCHHHHHHHHHHCCCCEEEC
T ss_conf 9999975981899-816675------11046998999999999999865977999818--97888876665259723402
Q ss_pred ECCC-------------CCCCCCEEE------C-CCCCCCCCEEEEECHHHCCHHHHHHHH
Q ss_conf 3267-------------676321000------0-245455742899521320336688898
Q gi|254780409|r 189 DKRR-------------EHPGKIEVM------N-IIGKVEGKDCILIDDIVDTGGTLCGAA 229 (310)
Q Consensus 189 ~K~R-------------~~~~~v~~~------~-~~gdV~gr~vIIVDDii~TGgTi~~aa 229 (310)
-++= ..+.++-+. . .-|+-.|-.+|+|.-++++.+=..+.-
T Consensus 91 A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~n 151 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKIN 151 (175)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHEEEECCHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHH
T ss_conf 2596279999999980998368799851255666413414727999987116640555556
No 110
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=87.10 E-value=0.77 Score=25.97 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCC-------------CEEEE---EECCCCCHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 36688898987526875-------------21787---2055557168988863699899981788784
Q gi|254780409|r 222 GGTLCGAADALYEQGAL-------------SVTAY---ITHGVLSSSSIERIEKSKMKELVITDSIQPT 274 (310)
Q Consensus 222 GgTi~~aa~~Lk~~GA~-------------~V~~~---~THgifs~~a~e~l~~s~i~~iv~TnTi~~~ 274 (310)
|.|++.-.+..|+.+++ +|.++ ..-|--+..-++.|.++|.++|.+--+-||.
T Consensus 312 gRtFI~p~q~~R~~~v~~Klnp~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi 380 (445)
T PRK08525 312 GRTFIEPTQEMRNLKVKLKLNPMRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEI 380 (445)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 630148854455653232300234521798699981761557789999999997799889999689996
No 111
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=87.04 E-value=0.91 Score=25.48 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCC-------------CCEEEE---EECCCCCHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 3668889898752687-------------521787---205555716898886369989998178878
Q gi|254780409|r 222 GGTLCGAADALYEQGA-------------LSVTAY---ITHGVLSSSSIERIEKSKMKELVITDSIQP 273 (310)
Q Consensus 222 GgTi~~aa~~Lk~~GA-------------~~V~~~---~THgifs~~a~e~l~~s~i~~iv~TnTi~~ 273 (310)
|.|++.-.+.+|+.|- |+|.++ ..-|--|..-.+.+.++|.++|.+--.-|+
T Consensus 320 gRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~ 387 (470)
T COG0034 320 GRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPP 387 (470)
T ss_pred CEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 34666886788775030303701788589769997265145766999999999718878899842897
No 112
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=85.47 E-value=1.6 Score=23.87 Aligned_cols=174 Identities=25% Similarity=0.341 Sum_probs=102.2
Q ss_pred CEEEE-E--CCCCCCCHHHHHHHHHHHHHHHHCCCC-HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEE
Q ss_conf 70899-8--597888046799999999999861720-0113102330110343112565214777652000026772699
Q gi|254780409|r 48 EDVFI-V--QSTSCPANDYLMELLIMIDAVRRSSAR-RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIM 123 (310)
Q Consensus 48 ~dV~i-v--qs~~~~~nd~lmeLl~~~~a~k~~~A~-~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit 123 (310)
-+||+ + +.-+.+|=|-+ -+-++.||-|+.--+ --++|-| +++..-|+.+.+|-- -|+.-++|
T Consensus 23 ~~v~~KlE~~NPs~SVKDRi-a~~MI~~AEk~G~lk~G~~IvEp----------TSGNTGIaLAmvAAA---rGYklilt 88 (312)
T TIGR01139 23 ADVFVKLEFFNPSGSVKDRI-ALNMIEDAEKRGLLKPGKTIVEP----------TSGNTGIALAMVAAA---RGYKLILT 88 (312)
T ss_pred CEEEEEEECCCCCCCHHHHH-HHHHHHHHHHCCCCCCCCEEEEC----------CCCCHHHHHHHHHHH---HCCEEEEE
T ss_conf 33899960459898677788-99999999865886888889823----------777326999999987---18949998
Q ss_pred ECCCCHHHHHHCCCCCEECCHH-HHHHHHHHHHCCCCCEEEEECC----CCHHHHHHHHHHHCCCCEEEEECCCCCCCC-
Q ss_conf 5158357765258862000103-7777876530585551885166----563578999999709979998326767632-
Q gi|254780409|r 124 LDLHAGQVQGFFDIPTDNLYAL-PILERDIKERNDISNLMVVSPD----VGGVVRARALAKRLGCLLAIVDKRREHPGK- 197 (310)
Q Consensus 124 ~DlH~~~~~~~F~ip~~nl~~~-~~l~~~l~~~~~~~~~vVVaPD----~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~- 197 (310)
|= -+ .+-. ..+.+. +. -+ +|..|- +|++++|+.+++..+-.|.++.. =+.+-+
T Consensus 89 MP-et-------------MS~ERr~lL~a----yG-Ae-LvLTpg~~GMkGAI~KA~Ei~~~~Pn~y~m~~Q-F~NpANP 147 (312)
T TIGR01139 89 MP-ET-------------MSIERRKLLKA----YG-AE-LVLTPGAEGMKGAIAKAEEIAESTPNSYFMLQQ-FENPANP 147 (312)
T ss_pred CC-CC-------------HHHHHHHHHHH----CC-CE-EEECCCCCCCHHHHHHHHHHHHHCCCCEEECCC-CCCCCHH
T ss_conf 67-43-------------26899999987----09-65-887281237666789999999868792652245-7872214
Q ss_pred -----CEEECCCCCCCCC---EEEEECHHHCCHHHHHHHHHHHHHCCC--CCEEEEEEC----CCCCHH-HHHHHH
Q ss_conf -----1000024545574---289952132033668889898752687--521787205----555716-898886
Q gi|254780409|r 198 -----IEVMNIIGKVEGK---DCILIDDIVDTGGTLCGAADALYEQGA--LSVTAYITH----GVLSSS-SIERIE 258 (310)
Q Consensus 198 -----v~~~~~~gdV~gr---~vIIVDDii~TGgTi~~aa~~Lk~~GA--~~V~~~~TH----gifs~~-a~e~l~ 258 (310)
...-++.-|..|+ |++|- =+-|||||.-+.+.||+.-. +.|.++++= +|+|++ |-|.++
T Consensus 148 ~~Hr~TTg~EIw~d~dg~G~~D~FVa--G~GTGGTITGvG~~LK~~~pkG~~~~~~AVEP~~SPVLSggLAG~~ik 221 (312)
T TIGR01139 148 EIHRKTTGPEIWRDTDGKGRLDAFVA--GVGTGGTITGVGEVLKEKKPKGKDIKIVAVEPAESPVLSGGLAGEEIK 221 (312)
T ss_pred HHHHHCCHHHHHHHHCCCCCEEEEEE--EECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 76162027899996278983117997--323685154789987400789955899987277431344333001026
No 113
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=84.40 E-value=0.95 Score=25.35 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE----------------ECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 5455742899521320336688898987526875217872----------------055557168988863699899981
Q gi|254780409|r 205 GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI----------------THGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 205 gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~----------------THgifs~~a~e~l~~s~i~~iv~T 268 (310)
|=+|+|.+ |.|++.-.+..|+.+.+.-+-.. .-|--+..-++.|.++|.++|.+-
T Consensus 312 glikn~yv---------gRTFI~p~q~~R~~~v~~Kln~~~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~r 382 (475)
T PRK07631 312 GLIKNRYV---------GRTFIQPSQALREQGVKMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVR 382 (475)
T ss_pred HHHCCCEE---------CCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 11001301---------465779758899874420142442003897379974435106419999999997699889999
Q ss_pred CCCCCC
Q ss_conf 788784
Q gi|254780409|r 269 DSIQPT 274 (310)
Q Consensus 269 nTi~~~ 274 (310)
-+-||.
T Consensus 383 i~sPpi 388 (475)
T PRK07631 383 ISSPPI 388 (475)
T ss_pred ECCCCC
T ss_conf 689985
No 114
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=83.36 E-value=2.1 Score=23.13 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=42.2
Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99768999999999999589104448998699707888567868970899859788804679999999999986172001
Q gi|254780409|r 3 IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRI 82 (310)
Q Consensus 3 i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~i 82 (310)
+++.-++...|...+.++ ..++.....-++.+|........+..+|++|+-|..+... |++..+..+|+.|+..|
T Consensus 10 ~~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~----~~~~~~~~a~~~g~~~i 84 (131)
T pfam01380 10 VIGAGTSYAAALELALKL-EEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETR----DLLEAAKLLKARGAKII 84 (131)
T ss_pred EEEECHHHHHHHHHHHHH-HHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCH----HHHHHHHHHHHCCCEEE
T ss_conf 999326999999999999-9868987786365886606756799999999954898657----68987899998499699
No 115
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=83.29 E-value=1.1 Score=25.03 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=39.8
Q ss_pred CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC-------------EEEE---EECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 54557428995213203366888989875268752-------------1787---2055557168988863699899981
Q gi|254780409|r 205 GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS-------------VTAY---ITHGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 205 gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~-------------V~~~---~THgifs~~a~e~l~~s~i~~iv~T 268 (310)
|=+|+|-+ |.|++.-.+.+|+.+.+. |.++ ..-|--+..-++.|.++|.++|.+-
T Consensus 336 glikn~Yv---------gRTFI~p~q~~R~~~vr~Kln~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~r 406 (495)
T PRK07349 336 GLIKNRYV---------GRTFIQPTQAMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 406 (495)
T ss_pred HHHHCCCC---------CCCCCCCCHHHHHHCCCEEEEECHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 01204544---------655518758887632013201367885898599982660557469999999997699889999
Q ss_pred CCCCCC
Q ss_conf 788784
Q gi|254780409|r 269 DSIQPT 274 (310)
Q Consensus 269 nTi~~~ 274 (310)
-+-||.
T Consensus 407 iasPpi 412 (495)
T PRK07349 407 ISSPPV 412 (495)
T ss_pred ECCCCC
T ss_conf 689985
No 116
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=83.23 E-value=3.9 Score=21.28 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=68.3
Q ss_pred HHHCCCCHHHHHCCCCCHHHCC--CCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHH
Q ss_conf 9861720011310233011034--31125652147776520000267726995158357765258862000103777787
Q gi|254780409|r 74 VRRSSARRITGVIPYFGYCRQD--RKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERD 151 (310)
Q Consensus 74 ~k~~~A~~it~ViPY~~YaRqD--r~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~ 151 (310)
+++.+.+ .+|+-+-|--|+= ....+.--.+...-.++|+.+|+|.++.++ |+-.+-++++..-+.+.
T Consensus 38 a~~~~~~--s~v~TF~phP~~vl~~~~~~~~l~~~~ek~~ll~~~Gid~~~~~~---------F~~~~a~ls~e~Fi~~i 106 (303)
T PRK05627 38 ARERGLP--SVVMTFEPHPREFFAPDSAPARLTPLRDKAELLAELGVDYVLVLP---------FDEEFAKLSAEEFIEDL 106 (303)
T ss_pred HHHHCCC--EEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC---------CCHHHHCCCHHHHHHHH
T ss_conf 9984997--899995699999819988861249999999999973998799856---------76787659999999998
Q ss_pred HHHHCCCCCEEEEECC-------CCHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 6530585551885166-------563578999999709979998326767
Q gi|254780409|r 152 IKERNDISNLMVVSPD-------VGGVVRARALAKRLGCLLAIVDKRREH 194 (310)
Q Consensus 152 l~~~~~~~~~vVVaPD-------~G~~~ra~~~a~~L~~~~~~~~K~R~~ 194 (310)
+.+..+. ..+||+.| .|.+..-+.+++.+|..+..+.+....
T Consensus 107 L~~~l~~-k~ivvG~Df~FG~~r~G~~~~L~~~~~~~g~~v~~v~~~~~~ 155 (303)
T PRK05627 107 LVKGLNV-KFVVVGDDFRFGKKRAGDFELLQEAGKEFGFEVEVVPEVCED 155 (303)
T ss_pred HHHCCCC-EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCEEEC
T ss_conf 8726784-499975773336788889999999998749618977567538
No 117
>pfam08468 MTS_N Methyltransferase small domain N-terminal. This domain is found to the N-terminus of the methyltransferase small domain (pfam05175) in bacterial proteins.
Probab=83.04 E-value=4 Score=21.23 Aligned_cols=120 Identities=20% Similarity=0.175 Sum_probs=72.8
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCHHHH-HHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEE
Q ss_conf 7888567868970899859788804679-999999999986172001131023301103431125652147776520000
Q gi|254780409|r 37 VFVEIGENVRGEDVFIVQSTSCPANDYL-MELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQ 115 (310)
Q Consensus 37 ~~v~i~~~vrg~dV~ivqs~~~~~nd~l-meLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~ 115 (310)
.-.|-.+-..|++|+++. +++|.+ -|| . .-+.++++--=|+.|..|-+. +..+.....+.+-..
T Consensus 3 vllR~~~~f~gk~VL~ag----~~~D~l~~~L-------~-~~~~~v~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~~ 67 (155)
T pfam08468 3 VLLRHLELFEGKHVLFAG----EIADDLPQQL-------A-THCSSVHVWTWHFGYQLQLQA---HNNIRFYFGVEAPEV 67 (155)
T ss_pred HHHHHHHHHCCCCEEEEC----CCCCHHHHHH-------H-HHCCEEEEEEEHHHHHHHHHH---CCCCCEEEECCCCCC
T ss_conf 551139987898089953----8640258998-------7-633778997625999998761---458648762467876
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 26772699515835776525886200010377778765305855518851665635789999997099
Q gi|254780409|r 116 AGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGC 183 (310)
Q Consensus 116 ~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~ 183 (310)
..+|-+|..=|-+-+...| +|............+.||+.+.||++.|.++-..++.
T Consensus 68 ~~~D~vi~y~PKaK~e~~~------------lL~~l~s~l~~g~ei~vVGENr~GIkSa~K~L~~~~~ 123 (155)
T pfam08468 68 ADADLLIYYWPKAKQEAEY------------LLNNLLSKLPIGTEIFIVGENRSGVRSAEKMLAAYGP 123 (155)
T ss_pred CCCCEEEEECCCCHHHHHH------------HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 7778899983787899999------------9999997289997799996672307689999874177
No 118
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.85 E-value=4 Score=21.18 Aligned_cols=116 Identities=14% Similarity=0.221 Sum_probs=66.4
Q ss_pred HHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC---
Q ss_conf 778765305855518851665---63578999999709979998326767632100002454557428995213203---
Q gi|254780409|r 148 LERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT--- 221 (310)
Q Consensus 148 l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T--- 221 (310)
||..+.-..+-.++.+|+-|. ||+.--+.||+.||+|+-+++...+ ......+..++++|+||--=.+
T Consensus 230 LAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~------l~~al~~~~~~dlILIDTaG~s~~d 303 (412)
T PRK05703 230 LAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKE------LAKALEQLANCDLILIDTAGRSQRD 303 (412)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHH------HHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 9999999729981799983767777999999999971973798479999------9999987158997999689889789
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCH---HHHHHHHHCCCCEEEECC
Q ss_conf 366888989875268752178720555571---689888636998999817
Q gi|254780409|r 222 GGTLCGAADALYEQGALSVTAYITHGVLSS---SSIERIEKSKMKELVITD 269 (310)
Q Consensus 222 GgTi~~aa~~Lk~~GA~~V~~~~THgifs~---~a~e~l~~s~i~~iv~Tn 269 (310)
..-+-+....+...+.-.++++.+=.-=.. ...+++..-+++.+|.|-
T Consensus 304 ~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~TK 354 (412)
T PRK05703 304 PRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFSRLPLDGLILTK 354 (412)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999999986248871899975989989999999984679998799971
No 119
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=82.62 E-value=4.1 Score=21.13 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=55.5
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH----HHHHHCCCCEEEECCCCCCCHH
Q ss_conf 4557428995213203366888989875268752178720555571689----8886369989998178878434
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSI----ERIEKSKMKELVITDSIQPTDL 276 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~----e~l~~s~i~~iv~TnTi~~~~~ 276 (310)
..+|+.+.++- .+.+-.-+|+..|++....-.++..-||.|+.... ++|.+++-+=+.|-...|.+|.
T Consensus 105 ~~~~~~vfllG---gkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~VgmG~P~QE~ 176 (253)
T COG1922 105 AEEGKRVFLLG---GKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVGMGVPRQEI 176 (253)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 75686499964---8778999999999987899569995178788356899999998559998999569962279
No 120
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=82.25 E-value=4.2 Score=21.03 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=69.6
Q ss_pred HHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHH---HHCCCCEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf 5258862000103777787653058555188516656-357899999---970997999832676763210000245455
Q gi|254780409|r 133 GFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVG-GVVRARALA---KRLGCLLAIVDKRREHPGKIEVMNIIGKVE 208 (310)
Q Consensus 133 ~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ra~~~a---~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~ 208 (310)
.+|......-.-...+++|+.+..+.+++.++.+|.. +...+..+. ++.|..+.... ....+.......+..++
T Consensus 110 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~vaiv~~d~~~g~~~~~~~~~~~~~~g~~v~~~~--~~~~~~~d~~~~i~~l~ 187 (298)
T cd06268 110 YVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEE--TYPPGATDFSPLIAKLK 187 (298)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE--ECCCCCCCHHHHHHHHH
T ss_conf 7899249869999999999998349858999778734679999999998997499899999--64876577799999999
Q ss_pred --CCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf --7428995213203366888989875268752178720555571689888636998999817
Q gi|254780409|r 209 --GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD 269 (310)
Q Consensus 209 --gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn 269 (310)
+-++|++ +..+.......+.+++.|-. .-.+.+++.......+..... .+.++.+-
T Consensus 188 ~~~pd~v~~---~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 245 (298)
T cd06268 188 AAGPDAVFL---AGYGGDAALFLKQAREAGLK-VPIVGGDGAAAPALLELAGDA-AEGVLGTT 245 (298)
T ss_pred HCCCCEEEE---CCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHHHH-HCCEEEEE
T ss_conf 769999999---17626789999999982999-739995677778999978897-58879998
No 121
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.66 E-value=4.5 Score=20.90 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=55.9
Q ss_pred CCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHH--HHHHHHH
Q ss_conf 5855518851665---6357899999970997999832676763210000245455742899521320336--6888989
Q gi|254780409|r 156 NDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGG--TLCGAAD 230 (310)
Q Consensus 156 ~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGg--Ti~~aa~ 230 (310)
++.+++.+|..|. |+..--+.|++.||+|+-.++-. .+......+..+|+.|++|-.=-+-. .+.+-.+
T Consensus 376 ~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~------~~l~~~l~~l~~~~lvliDTaG~~~rd~~~~~~~~ 449 (557)
T PRK12727 376 HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSA------ESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLN 449 (557)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCH------HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 399818999726640879999999999839757982899------99999999836999899949998846999999999
Q ss_pred HHHHC-CCCC--EEEEEECCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 87526-8752--178720555571689888636998999817
Q gi|254780409|r 231 ALYEQ-GALS--VTAYITHGVLSSSSIERIEKSKMKELVITD 269 (310)
Q Consensus 231 ~Lk~~-GA~~--V~~~~THgifs~~a~e~l~~s~i~~iv~Tn 269 (310)
.|... +.++ |..+.+|+--....++++...+++.+|.|-
T Consensus 450 ~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TK 491 (557)
T PRK12727 450 WLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTK 491 (557)
T ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 875147763599996889989999999985379987489961
No 122
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=81.26 E-value=4.6 Score=20.80 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCC-HHHH---HHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--CCCEEEEECH
Q ss_conf 03777787653058555188516656-3578---9999997099799983267676321000024545--5742899521
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDVG-GVVR---ARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV--EGKDCILIDD 217 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~r---a~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~gr~vIIVDD 217 (310)
-...+++|+.++....++.++.+|.. +... .+...++.|..+.... +...+.......+-.+ .+-++|++
T Consensus 130 ~~~~~~~~~~~~~g~k~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~--~~~~~~~Df~~~~~~i~~~~pd~v~~-- 205 (362)
T cd06343 130 EARIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAET--SYEVTEPDFDSQVAKLKAAGADVVVL-- 205 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE--ECCCCCCCHHHHHHHHHHCCCCEEEE--
T ss_conf 99999999998279873899647857779999999999997699688999--45777788899999998549399999--
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 320336688898987526875217872055557168988863699899981788
Q gi|254780409|r 218 IVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 218 ii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
...+.......+.+++.|-+........+.......+..-....+.++.+...
T Consensus 206 -~~~~~~~~~~~~q~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~ 258 (362)
T cd06343 206 -ATTPKFAAQAIRKAAELGWKPTFLLSSVSASVASVLKPAGLEAAEGVIAAAYL 258 (362)
T ss_pred -ECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf -47846899999999976999867987346675899998678875968998763
No 123
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=80.57 E-value=2.5 Score=22.59 Aligned_cols=187 Identities=21% Similarity=0.260 Sum_probs=106.9
Q ss_pred CCEEEEE----EEECCC-CEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH-HHHHCCCCCHHHCC
Q ss_conf 9104448----998699-70788856786897089985978880467999999999998617200-11310233011034
Q gi|254780409|r 22 TSLGKAS----VTYFSD-REVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARR-ITGVIPYFGYCRQD 95 (310)
Q Consensus 22 ~~l~~~~----~~~F~d-GE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~-it~ViPY~~YaRqD 95 (310)
+||.+.. +..=-+ ++++++++.. +-+.+|=|-+ -+-++.+|-++.--+. -++|-|
T Consensus 8 TPLV~L~RCirl~~~~~~~~v~~KLE~~----------NP~gSVKDR~-A~~MI~~AE~~G~lk~G~~iiEa-------- 68 (315)
T TIGR01136 8 TPLVRLNRCIRLSEGCDEAEVLVKLEGF----------NPGGSVKDRI-ALNMILDAEKRGLLKPGTTIIEA-------- 68 (315)
T ss_pred CCEEEEEEEEECCCCCCCCEEEEEEECC----------CCCCCHHHHH-HHHHHHHHHHCCCCCCCCEEEEC--------
T ss_conf 8714410035427898851799997066----------9897665688-89999999865887888889842--------
Q ss_pred CCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCC---CHHH
Q ss_conf 3112565214777652000026772699515835776525886200010377778765305855518851665---6357
Q gi|254780409|r 96 RKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDV---GGVV 172 (310)
Q Consensus 96 r~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~---G~~~ 172 (310)
+++..-|+.+.+|-.. |+.=++||= +|.+-.+- .+.+-+ ..++++..+.. |+++
T Consensus 69 --TSGNTGIaLAMvAAar---GYkliL~MP--------------etmS~ERr---~~l~ay-GA~L~LT~~~~GM~GAi~ 125 (315)
T TIGR01136 69 --TSGNTGIALAMVAAAR---GYKLILTMP--------------ETMSLERR---KLLKAY-GAELILTPAEEGMKGAID 125 (315)
T ss_pred --CCCCHHHHHHHHHHHC---CCCEEEECC--------------CCHHHHHH---HHHHHC-CCEEEEECCCCCCHHHHH
T ss_conf --7784489999999861---991899858--------------87178999---999870-966988373357577899
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCC------CEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCC--CCEEEEE
Q ss_conf 8999999709979998326767632------1000024545574289952132033668889898752687--5217872
Q gi|254780409|r 173 RARALAKRLGCLLAIVDKRREHPGK------IEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA--LSVTAYI 244 (310)
Q Consensus 173 ra~~~a~~L~~~~~~~~K~R~~~~~------v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA--~~V~~~~ 244 (310)
+|+.+++...-.+.+++.-- .+-+ ...-++--|..|+-=..|= =+-|||||.-+.+.||++-. +.|.+++
T Consensus 126 kA~el~~~~p~~~~~l~QF~-NpaNp~~H~~TTGpEIw~dt~G~id~FVa-G~GTGGTItGvgr~LK~~~pkG~~i~i~a 203 (315)
T TIGR01136 126 KAEELAAETPNKYVMLDQFE-NPANPEAHRKTTGPEIWRDTDGRIDHFVA-GVGTGGTITGVGRVLKEQNPKGKNIQIVA 203 (315)
T ss_pred HHHHHHHHCCCCEEECCCCC-CCCHHHHHHCCCHHHHHHHCCCCEEEEEE-ECCCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999985889621033258-85214762305657999732892358997-11567511168989863268996179999
Q ss_pred ECC----CCCHH
Q ss_conf 055----55716
Q gi|254780409|r 245 THG----VLSSS 252 (310)
Q Consensus 245 THg----ifs~~ 252 (310)
.-| +++++
T Consensus 204 vEP~~s~~Ls~G 215 (315)
T TIGR01136 204 VEPAESPVLSGG 215 (315)
T ss_pred EECCCCCHHHHH
T ss_conf 756873010011
No 124
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=79.85 E-value=5.1 Score=20.50 Aligned_cols=153 Identities=21% Similarity=0.299 Sum_probs=87.9
Q ss_pred EEEECCCCHHHHHHHHHHHC--CCEEEEEEE------------ECCCCEEEEEE---CCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 89976899999999999958--910444899------------86997078885---67868970899859788804679
Q gi|254780409|r 2 KIFAGNSNRNLAQEICDYLH--TSLGKASVT------------YFSDREVFVEI---GENVRGEDVFIVQSTSCPANDYL 64 (310)
Q Consensus 2 ~i~~g~~~~~La~~ia~~lg--~~l~~~~~~------------~F~dGE~~v~i---~~~vrg~dV~ivqs~~~~~nd~l 64 (310)
.+|++--+.-+|+++.-+-| .+..|+-+. .|.--|-+.+. ...+|..||+++-|++. .|-.=
T Consensus 42 ~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~~DVliviSnSG-rNpvp 120 (243)
T COG4821 42 YVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRPNDVLIVISNSG-RNPVP 120 (243)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCC
T ss_conf 99648628899999986437800113214771652135210004576531777789996688788899980799-89844
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCHH-HCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHC-----C--
Q ss_conf 9999999999861720011310233011-0343112565214777652000026772699515835776525-----8--
Q gi|254780409|r 65 MELLIMIDAVRRSSARRITGVIPYFGYC-RQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFF-----D-- 136 (310)
Q Consensus 65 meLl~~~~a~k~~~A~~it~ViPY~~Ya-RqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F-----~-- 136 (310)
+|+ ..-.|.-||+-| ++.-+-|| .|--+++.| | +|++.+ | +.+|.|+++--..| +
T Consensus 121 ie~---A~~~rekGa~vI--~vTSl~ySq~~~SRh~SG-----K---~Ly~~a--D--vVlDN~av~GDAvl~~a~~ei~ 183 (243)
T COG4821 121 IEV---AEYAREKGAKVI--AVTSLDYSQSQASRHKSG-----K---LLYEFA--D--VVLDNGAVKGDAVLEIAGSEIK 183 (243)
T ss_pred HHH---HHHHHHCCCEEE--EEEHHHHHHHCHHCCCCH-----H---HHHHHC--C--EEEECCCCCCCHHEEECCCCCC
T ss_conf 389---999986597699--985454323111015415-----6---776521--0--5651798666210135474332
Q ss_pred -CCCEECCHH----HHHHHHHHH--HCCCCCEEEEECCCCHHH
Q ss_conf -862000103----777787653--058555188516656357
Q gi|254780409|r 137 -IPTDNLYAL----PILERDIKE--RNDISNLMVVSPDVGGVV 172 (310)
Q Consensus 137 -ip~~nl~~~----~~l~~~l~~--~~~~~~~vVVaPD~G~~~ 172 (310)
+|+-...+. ..+++.+.. ..++++|+..|-+..|..
T Consensus 184 ~~ptSt~~g~~ilqa~faeai~~mv~~g~~pPvf~S~Nidgad 226 (243)
T COG4821 184 VGPTSTVSGVTILQATFAEAIELMVEKGYTPPVFLSANIDGAD 226 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH
T ss_conf 3674026999999999999999998579999846645788715
No 125
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=79.23 E-value=5.3 Score=20.37 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=70.7
Q ss_pred CCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHH---HHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCC--
Q ss_conf 58862000103777787653058555188516656-35789---9999970997999832676763210000245455--
Q gi|254780409|r 135 FDIPTDNLYALPILERDIKERNDISNLMVVSPDVG-GVVRA---RALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVE-- 208 (310)
Q Consensus 135 F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ra---~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~-- 208 (310)
|.....+-...+.+++|+.+....+++.++.+|.. |...+ +...+++|..+.... +...+.......+..++
T Consensus 115 Fr~~~~~~~~~~~~~~~~~~~~~~kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~--~~~~~~~Df~~~l~~i~~~ 192 (347)
T cd06335 115 FRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVE--WFNWGDKDMTAQLLRAKAA 192 (347)
T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEE--EECCCCCCHHHHHHHHHHC
T ss_conf 96118879999999999998458866999970763668999999999986598675788--4079983489999999866
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf 7428995213203366888989875268752178720555571689888636998999
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELV 266 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv 266 (310)
+-|+|++ ...|.......+.+++.|-+.. .+...++-++...+..... .+.++
T Consensus 193 ~pD~V~~---~~~~~~~~~~~~q~~~~G~~~~-~~g~~~~~~~~~~~~~g~~-a~g~~ 245 (347)
T cd06335 193 GADAIII---VGNGPEGAQIANGMAKLGWKVP-IISHWGLSGGNFIEGAGPA-ANDAL 245 (347)
T ss_pred CCCEEEE---ECCCHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHH-HCCEE
T ss_conf 9999999---4776179999999997199976-7941477758999865664-16728
No 126
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=78.92 E-value=5.5 Score=20.31 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=100.5
Q ss_pred HHHHHHHHEECCCCEEEEECCCCHHHH--HH--C-CCCCEECCHHHHHHHHHHHHCC-CCCEEEEECCCC--HHHHHHHH
Q ss_conf 777652000026772699515835776--52--5-8862000103777787653058-555188516656--35789999
Q gi|254780409|r 106 AKLVANLITQAGADRVIMLDLHAGQVQ--GF--F-DIPTDNLYALPILERDIKERND-ISNLMVVSPDVG--GVVRARAL 177 (310)
Q Consensus 106 ak~~a~ll~~~G~d~vit~DlH~~~~~--~~--F-~ip~~nl~~~~~l~~~l~~~~~-~~~~vVVaPD~G--~~~ra~~~ 177 (310)
++.+-+++...+. .++..+++.|... +. | =+..||..+..++++|+.+... ..++.++.--.| +..|.+-|
T Consensus 74 ~~~I~~~~~~~~~-kliv~ni~tp~~~~~~~~p~~yvg~Dn~~gg~~~a~~l~~~lg~~g~vail~g~~g~~s~~R~~GF 152 (280)
T cd06303 74 RKLIERVLASGKT-KIILQNITTPVKAWLKHQPLLYVGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTF 152 (280)
T ss_pred HHHHHHHHHCCCC-CEEEEECCCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 7789999974899-589994788612340468755870763999999999999975999759999678874277899889
Q ss_pred HHHCCC--CEEEEECCCCCCCCCEEE-------CCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC-CEEEEEECC
Q ss_conf 997099--799983267676321000-------0245455742899521320336688898987526875-217872055
Q gi|254780409|r 178 AKRLGC--LLAIVDKRREHPGKIEVM-------NIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL-SVTAYITHG 247 (310)
Q Consensus 178 a~~L~~--~~~~~~K~R~~~~~v~~~-------~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~-~V~~~~THg 247 (310)
.+.++. .+-++...-....+.+.. .-.-|+++ |. +..-..-..++++|++.|-. +|.+...-|
T Consensus 153 ~~~~~~~~~i~iv~~~~~~~~r~~a~~~a~~~L~~~Pdi~~---I~----a~nd~mAlGa~~Al~~ag~~~~i~vvG~dg 225 (280)
T cd06303 153 IDCVHARNNWTLTSEFYTDATRQKAYQATSDILSNNPDVDF---IY----ACSTDIALGASDALKELGREDDILINGWGG 225 (280)
T ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCE---EE----ECCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 99998689967998852776689999999999986989309---99----789457899999999739878879997279
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCCC
Q ss_conf 557168988863699899981788784347407985998117999999998718887
Q gi|254780409|r 248 VLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRTFEERS 304 (310)
Q Consensus 248 ifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i~~~~S 304 (310)
+..+++.|++..++- |+-+.. -|.+-..||||+..-+|.+
T Consensus 226 --~~~~l~ai~~G~l~a-----Tv~r~~----------dd~g~~~aeaik~~leg~~ 265 (280)
T cd06303 226 --GSAELDAIQQGELDV-----TVMRMN----------DDTGVAMAEAIKLDLEGRS 265 (280)
T ss_pred --CHHHHHHHHCCCCEE-----EEEECC----------CCHHHHHHHHHHHHHCCCC
T ss_conf --999999998499858-----984026----------6421999999999865898
No 127
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=77.50 E-value=6 Score=20.04 Aligned_cols=102 Identities=15% Similarity=0.253 Sum_probs=63.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCC
Q ss_conf 70899859788804679999999999986172001131023301103431125652147776520000267726995158
Q gi|254780409|r 48 EDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLH 127 (310)
Q Consensus 48 ~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH 127 (310)
++|+++.-. .|...|| +.++|+.|. ++++|+. +. ..|+-+...|+|+|+++|-+
T Consensus 5 ~~vwVf~e~----~~~~~EL---lg~Ar~Lg~-~v~avv~--G~----------------~~a~~l~~~Gad~V~~~~~~ 58 (312)
T PRK11916 5 NSVWVFSDN----PERYAEL---FGGAQQWGQ-QVYAIVQ--NT----------------DQAQAVMPYGPKCIYVLEQN 58 (312)
T ss_pred CCEEEEEEC----CCCHHHH---HHHHHHHCC-EEEEEEE--CC----------------CHHHHHHHCCCCEEEEEECC
T ss_conf 778999967----8888999---999987388-2799996--68----------------06999986199889995164
Q ss_pred CHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 3577652588620001037777876530585551885166563578999999709979
Q gi|254780409|r 128 AGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLL 185 (310)
Q Consensus 128 ~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~ 185 (310)
... + . .+. -...+.+.+++. . .+.++++....|...+..+|.+|+.++
T Consensus 59 ~~~-~-~----~~~--y~~~l~~li~~~-~-P~~vL~~aT~~GRdlA~rlAarL~~gl 106 (312)
T PRK11916 59 DAL-Q-R----TEN--YAESIAALLKDK-H-PAMLLLAATKRGKALAARLSVQLNAAL 106 (312)
T ss_pred HHH-C-C----CHH--HHHHHHHHHHHC-C-CCEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 121-0-3----068--999999999864-9-999998678116678999999849982
No 128
>PRK05723 flavodoxin; Provisional
Probab=77.17 E-value=4.7 Score=20.75 Aligned_cols=113 Identities=19% Similarity=0.112 Sum_probs=57.2
Q ss_pred EEECC---CCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCC--CCHHHHHHHHHHHHHHHHC
Q ss_conf 99768---999999999999589104448998699707888567868970899859788--8046799999999999861
Q gi|254780409|r 3 IFAGN---SNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSC--PANDYLMELLIMIDAVRRS 77 (310)
Q Consensus 3 i~~g~---~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~--~~nd~lmeLl~~~~a~k~~ 77 (310)
|+.|| +++.+|+++++.|.-.=..+ ..++..+... ......+.++||.||+. ..-|+...++- +++..
T Consensus 5 IlygS~tGnAe~vA~~~~~~l~~~g~~~--~~~~~~~~~~--~~~~~~~~~livtST~G~Gd~Pdn~~~f~~---~l~~~ 77 (151)
T PRK05723 5 ILSGSVYGTAEEVARHAESLLKAAGFEA--WHNPRASLQD--LLAFAPEALLAVTSTTGMGELPDNLMPLYS---AIRDQ 77 (151)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCE--EECCCCCHHH--HHCCCCCCEEEEECCCCCCCCCCCHHHHHH---HHHCC
T ss_conf 9997683489999999999999759952--6415554435--643688828999867899989822999999---99744
Q ss_pred CCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEE
Q ss_conf 7200113102330110343112565214777652000026772699
Q gi|254780409|r 78 SARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIM 123 (310)
Q Consensus 78 ~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit 123 (310)
.+....- +.|---+==|+-....=+-..|.+-+.|+..|+.+|.-
T Consensus 78 ~~~~L~~-l~yaVlgLGDSsY~d~FC~agk~ld~~l~~lGA~~i~~ 122 (151)
T PRK05723 78 LPAAWRG-LPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQP 122 (151)
T ss_pred CCCCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 8866799-98999961376258899699999999999869927146
No 129
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=77.16 E-value=6.1 Score=19.98 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=62.3
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHC--
Q ss_conf 77778765305855518851665---6357899999970997999832676763210000245455742899521320--
Q gi|254780409|r 146 PILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVD-- 220 (310)
Q Consensus 146 ~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~-- 220 (310)
.-|+.+++.+ ..++.+++-|. ||+..-+.+++.+|+|+.......+.........-....+++|+|++|--=.
T Consensus 19 aKLAa~~~~~--~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~~D~IlIDTaGr~~ 96 (196)
T pfam00448 19 AKLAAYLKKQ--GKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAENYDVVLVDTAGRLQ 96 (196)
T ss_pred HHHHHHHHHC--CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9999999977--99289997587768899999999986398178148777878999999999884689999998999874
Q ss_pred CHHH-HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH---H-HHCCCCEEEECC
Q ss_conf 3366-88898987526875217872055557168988---8-636998999817
Q gi|254780409|r 221 TGGT-LCGAADALYEQGALSVTAYITHGVLSSSSIER---I-EKSKMKELVITD 269 (310)
Q Consensus 221 TGgT-i~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~---l-~~s~i~~iv~Tn 269 (310)
.-.. +.+..+.+.......++++..-.. ..++.+. . ...+++.+|.|-
T Consensus 97 ~d~~~~~el~~~~~~~~~~~~~LVl~a~~-~~~~~~~~~~f~~~~~~~~~I~TK 149 (196)
T pfam00448 97 NDKNLMDELKKIKRVIAPDEVLLVLDATT-GQNALNQAKAFNEAVGITGVILTK 149 (196)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 76778999999985228730289985677-821378999876004776268884
No 130
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=77.09 E-value=6.1 Score=19.97 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCC
Q ss_conf 80467999999999998617200113102330110343112565214777652000026772699515835776525886
Q gi|254780409|r 59 PANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIP 138 (310)
Q Consensus 59 ~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip 138 (310)
|.+.+.+|. ...+|+.|. .+|++. -|.+-+... .+-..++|+|+++.++-.. ..+|
T Consensus 19 ~~d~~Ale~---A~~lke~~~-~v~~v~-------------~G~~~~~~~-l~~~~a~GaD~v~~v~~~~--~~~~---- 74 (181)
T cd01985 19 PLDLEAVEA---ALRLKEYGG-EVTALV-------------IGPPAAEVA-LREALAMGADKVLLVEDPA--LAGY---- 74 (181)
T ss_pred CCCHHHHHH---HHHHHHCCC-CEEEEE-------------ECCCHHHHH-HHHHHHCCCCEEEEECCCC--CCCC----
T ss_conf 036999999---998644499-689999-------------788168999-9999772897899981674--4576----
Q ss_pred CEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 2000103777787653058555188516656357899999970997999
Q gi|254780409|r 139 TDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI 187 (310)
Q Consensus 139 ~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~ 187 (310)
+.......|++.+++. + .+.++.+-..-+-..+-.+|.+||.++..
T Consensus 75 -~~~~~a~~la~~i~~~-~-~dlVl~g~~s~g~~~~~~lA~~L~~~~v~ 120 (181)
T cd01985 75 -DPEATAKALAALIKKE-K-PDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred -CHHHHHHHHHHHHHHC-C-CCEEEECCCHHHCCHHHHHHHHHCCCCCC
T ss_conf -8899999999999860-9-98999604102225899999985997312
No 131
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit; InterPro: IPR005970 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme . ; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=76.85 E-value=0.71 Score=26.18 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=27.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCC--------CCCCCCHHHHHHHHHHEEC
Q ss_conf 68970899859788804679999999999986172001131023301103431--------1256521477765200002
Q gi|254780409|r 45 VRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRK--------PSPRTPISAKLVANLITQA 116 (310)
Q Consensus 45 vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~--------~~~~e~isak~~a~ll~~~ 116 (310)
+..+.+++|.|.. |.+..-| ---+++.|-..+. |||-+|-++- ..+=+|.=.+..+.|-..-
T Consensus 185 ~~~~~lv~~GSv~----D~~~~~l--~~e~~~LGi~~~~----flPa~~~~~lP~i~pgt~~a~~qPyL~~ta~~L~~eR 254 (458)
T TIGR01279 185 VDQRKLVLVGSVN----DIVADQL--RLELKQLGIPVVG----FLPASRFTELPVIGPGTVVAPLQPYLSDTATTLRRER 254 (458)
T ss_pred CCCCCEEEEECCC----CHHHHHH--HHHHHHCCCCCCC----CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHC
T ss_conf 2786568994355----1236779--9999837886434----2774334557687986169833741889999998502
Q ss_pred CCCEEEEE
Q ss_conf 67726995
Q gi|254780409|r 117 GADRVIML 124 (310)
Q Consensus 117 G~d~vit~ 124 (310)
|+..+-++
T Consensus 255 ~~~~L~~~ 262 (458)
T TIGR01279 255 GAKVLSAL 262 (458)
T ss_pred CCEEECCC
T ss_conf 66561157
No 132
>PRK10867 signal recognition particle protein; Provisional
Probab=76.14 E-value=2.5 Score=22.51 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=19.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEE
Q ss_conf 77778765305855518851665---635789999997099799
Q gi|254780409|r 146 PILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLA 186 (310)
Q Consensus 146 ~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~ 186 (310)
.-||.|++++ +..++.++|-|. +|+..-+.+++++++|+.
T Consensus 118 aKLA~~lk~k-~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~ 160 (453)
T PRK10867 118 GKLGKFLREK-HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (453)
T ss_pred HHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999973-898379855887705899999999985198043
No 133
>pfam06300 Tsp45I Tsp45I type II restriction enzyme. This family consists of several type II restriction enzymes.
Probab=74.33 E-value=0.71 Score=26.20 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=76.3
Q ss_pred HCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHC--------
Q ss_conf 102330110343112565214777652000026772699515835776525886200010377778765305--------
Q gi|254780409|r 85 VIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERN-------- 156 (310)
Q Consensus 85 ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~-------- 156 (310)
==||++|-..|+..-.+.|-|.+.+|..+..||...++ +..-.-+-.|-...|++-+|++++.
T Consensus 69 kdsY~aylk~dk~aiernP~ti~ri~~~lyemGl~~i~---------ek~~epke~nrqigpmfk~w~~~k~~gv~p~d~ 139 (261)
T pfam06300 69 KDSYLAYLKSDKAALERNPRTINRICGRLYEMGLNKII---------EKLSEPKETNRQIGPMFKRWYKEKSLGVEPVDL 139 (261)
T ss_pred CCCHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHH---------HHHCCCCCCCHHHCHHHHHHHHHHCCCCCCCCH
T ss_conf 64068998548888862979999999999998899999---------984498301402157899998764158787633
Q ss_pred -----CCCCEEEEECCCCHHHHHHHHHHH-CC----CCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHH
Q ss_conf -----855518851665635789999997-09----97999832676763210000245455742899521320336688
Q gi|254780409|r 157 -----DISNLMVVSPDVGGVVRARALAKR-LG----CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLC 226 (310)
Q Consensus 157 -----~~~~~vVVaPD~G~~~ra~~~a~~-L~----~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~ 226 (310)
..++.++.|-|.-= +.||++ || .++.++-+.+.. .++|+.| ++-|------..+.
T Consensus 140 ~~f~~n~~~~Il~aSD~~m----kdfAke~lgY~~~KGLDFiAr~n~k-------yiiGEaK----FlTDfGGhQnaq~~ 204 (261)
T pfam06300 140 APFIANEEDAILTASDEAM----KDFAKENLGYGHEKGLDFYARFNRS-------YLIGEAK----FLTDFGGHQNAQFN 204 (261)
T ss_pred HHHHCCCCCCEEECCHHHH----HHHHHHHCCCCCCCCCEEEEEECCC-------EEEEEEE----EEECCCCCCCHHHH
T ss_conf 1565143252577468999----9999986599855683079986371-------6776557----74045786307899
Q ss_pred HHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 89898752687521787205555
Q gi|254780409|r 227 GAADALYEQGALSVTAYITHGVL 249 (310)
Q Consensus 227 ~aa~~Lk~~GA~~V~~~~THgif 249 (310)
-|...++..+-+.+..+.--|+.
T Consensus 205 DA~~ti~~~~~n~ikI~IlDGV~ 227 (261)
T pfam06300 205 DAIATIEADEKRAIKVAILDGVL 227 (261)
T ss_pred HHHHHHHCCCCCEEEEEEECCEE
T ss_conf 99998625776515899962468
No 134
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=73.27 E-value=2.2 Score=22.87 Aligned_cols=67 Identities=28% Similarity=0.352 Sum_probs=44.3
Q ss_pred CCCCCC-----CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE--ECC-CCCHHHHHHHHHCCCC----EEEECCCC
Q ss_conf 454557-----42899521320336688898987526875217872--055-5571689888636998----99981788
Q gi|254780409|r 204 IGKVEG-----KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI--THG-VLSSSSIERIEKSKMK----ELVITDSI 271 (310)
Q Consensus 204 ~gdV~g-----r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~--THg-ifs~~a~e~l~~s~i~----~iv~TnTi 271 (310)
.-+.+| |---+|= -+-|||||..+++.||+.-.-+|.++- -|| +++++ |.|++++.. |=|.=|=+
T Consensus 168 ~~q~EGlnlfdk~~~~VA-g~GTGGTItGi~ryLK~~~~~~~~ivGaDP~GSila~p--E~LN~t~~t~Y~VEGiGyDF~ 244 (527)
T TIGR01137 168 LEQCEGLNLFDKLDMFVA-GVGTGGTITGIARYLKDESNPKVRIVGADPEGSILAQP--EELNKTGRTPYKVEGIGYDFI 244 (527)
T ss_pred HHHHCCCCHHCCCCEEEE-CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEECCC--CCCCCCCCCCEEEEEECCCCC
T ss_conf 986057301212117885-05788315545565432138933899876985332176--465557898314876214776
Q ss_pred CC
Q ss_conf 78
Q gi|254780409|r 272 QP 273 (310)
Q Consensus 272 ~~ 273 (310)
|+
T Consensus 245 P~ 246 (527)
T TIGR01137 245 PT 246 (527)
T ss_pred CC
T ss_conf 85
No 135
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=72.80 E-value=7.9 Score=19.26 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8889898752687521787205555716898886369989998178
Q gi|254780409|r 225 LCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS 270 (310)
Q Consensus 225 i~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT 270 (310)
+-+..+.|++.|+..|.+. .=|+.+.+-.++|++.++++++...|
T Consensus 80 ~~~lve~lre~G~~~i~v~-~GGvip~~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 80 VPGLVEALREAGVEDILVV-VGGVIPPGDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHHHHHHCCCCEEEE-ECCCCCCHHHHHHHHHCCCEEECCCC
T ss_conf 9999999998197554886-56866813679999818665468999
No 136
>CHL00194 ycf39 Ycf39; Provisional
Probab=71.75 E-value=8.3 Score=19.11 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=60.7
Q ss_pred CEEEECCCCHHHHHHHHHHH---CCCEEEEEEEE------CC-CCEEEEE--------ECCCCCCCEEEEECCCCCCCHH
Q ss_conf 98997689999999999995---89104448998------69-9707888--------5678689708998597888046
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYL---HTSLGKASVTY------FS-DREVFVE--------IGENVRGEDVFIVQSTSCPAND 62 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~l---g~~l~~~~~~~------F~-dGE~~v~--------i~~~vrg~dV~ivqs~~~~~nd 62 (310)
|+|+---++..++..|.+.| |.++- +-.|. +. -|-..+. +.+.+.|-|+++..++..|.+.
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~G~~Vr-~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~~~~~ 79 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDEGYQVK-CLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAIIDASTSRPSDL 79 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 9799989985899999999996889089-995786763234215967999427887789999659967999456677886
Q ss_pred H-HH-----HHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCC-HHHH-HHHHHHEECCCCEEEE
Q ss_conf 7-99-----99999999986172001131023301103431125652-1477-7652000026772699
Q gi|254780409|r 63 Y-LM-----ELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTP-ISAK-LVANLITQAGADRVIM 123 (310)
Q Consensus 63 ~-lm-----eLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~-isak-~~a~ll~~~G~d~vit 123 (310)
. .. .-.-+++||+++|.+|+. |++--.-|+. +..| ..+| ..-+.|...|.+..|.
T Consensus 80 ~~~~~vd~~g~~~li~AAk~aGVkr~V----~lS~lga~~~--~~~p~~~~K~~~E~~L~~Sgl~~TIl 142 (319)
T CHL00194 80 NNAYQIDLEGKLALIEAAKAAKVKRFI----FFSILNAEQY--PQVPLMKIKSDIEEKLKQSGINYTIF 142 (319)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEE----EECCCCCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 208898898899999999984998899----9613566668--87567787999999998679985998
No 137
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways . This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown. PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=71.66 E-value=5.8 Score=20.13 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=111.4
Q ss_pred CCCHHH-HHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCC
Q ss_conf 880467-9999999999986172001131023301103431125652147776520000267726995158357765258
Q gi|254780409|r 58 CPANDY-LMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFD 136 (310)
Q Consensus 58 ~~~nd~-lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ 136 (310)
.+.||. +-||+-+++.+.++.--==.||=--=|| |.==+||.+++=|+..|+-.|=.=|---|.+-.||+
T Consensus 48 RDsnEASWt~lv~vve~~sDavdGvPvLvDgDtGy---------GNFNnARr~arkle~~GaaG~ClEDk~FPK~NSf~g 118 (272)
T TIGR02320 48 RDSNEASWTQLVEVVETMSDAVDGVPVLVDGDTGY---------GNFNNARRLARKLEDRGAAGVCLEDKVFPKMNSFFG 118 (272)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC---------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
T ss_conf 53203208999999864312588801685378798---------714679999999974686322203555764133427
Q ss_pred CCCEECCHHHHHHHHHHH---HCCCCCEEEEE---------CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCC
Q ss_conf 862000103777787653---05855518851---------665635789999997099799983267676321000024
Q gi|254780409|r 137 IPTDNLYALPILERDIKE---RNDISNLMVVS---------PDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNII 204 (310)
Q Consensus 137 ip~~nl~~~~~l~~~l~~---~~~~~~~vVVa---------PD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~ 204 (310)
.....|-..++++--|+. .....+.|||| |-..+.+||+.|++. |.+=-++|-++..+.++....
T Consensus 119 drahpLAdi~EFcgkikAcKD~~~DpdFv~VAR~EAlIag~g~dEAL~RA~AYaeA-GADAiliHSrk~~p~qI~aF~-- 195 (272)
T TIGR02320 119 DRAHPLADIEEFCGKIKACKDAQRDPDFVVVARVEALIAGLGLDEALKRAEAYAEA-GADAILIHSRKADPEQIAAFM-- 195 (272)
T ss_pred CCCCCCCCHHHHHCCHHEEECCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHH-CHHHHHHHHCCCCHHHHHHHH--
T ss_conf 88887888154404100200678997536623047764389866899999998851-312455631348887999999--
Q ss_pred CCCCCCE-EEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 5455742-8995213203366888989875268752178720555
Q gi|254780409|r 205 GKVEGKD-CILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGV 248 (310)
Q Consensus 205 gdV~gr~-vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgi 248 (310)
--++|.. |+||=----+ -.+...+..|-.-| .++-|-+
T Consensus 196 ~aW~n~~PVvIvPTkYy~-----tpvd~fra~Gis~v-IWANHnm 234 (272)
T TIGR02320 196 KAWENSLPVVIVPTKYYK-----TPVDDFRALGISTV-IWANHNM 234 (272)
T ss_pred HHHCCCCCEEEECCCCCC-----CCHHHHHHCCCCEE-HHHHHHH
T ss_conf 964289877883476789-----97677863774233-0200337
No 138
>KOG2091 consensus
Probab=71.17 E-value=8.5 Score=19.02 Aligned_cols=53 Identities=19% Similarity=0.436 Sum_probs=23.4
Q ss_pred HHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCH---HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 77652000026772699515835776525886200010---3777787653058555188516
Q gi|254780409|r 107 KLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYA---LPILERDIKERNDISNLMVVSP 166 (310)
Q Consensus 107 k~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~---~~~l~~~l~~~~~~~~~vVVaP 166 (310)
+.+++.-...|+|.++ +|+-| |..+. ..+..+ ...+++.+.++ .+.-+.+|.|
T Consensus 174 ~tlv~~ck~~~fdGlV-levws-q~a~~----i~d~~al~~v~hl~k~Lhkq-~l~~iLvvPp 229 (392)
T KOG2091 174 QTLVNFCKKHGFDGLV-LEVWS-QLADV----IADKDALELVEHLGKALHKQ-ELQAILVVPP 229 (392)
T ss_pred HHHHHHHHHCCCCEEE-HHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHH-HEEEEEEECC
T ss_conf 9999999876888564-87999-99998----75258999999999999874-4179998179
No 139
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=69.92 E-value=9.1 Score=18.85 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCCEEEEECHHHCCHH-HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 5742899521320336-688898987526875217872055557168988863699899981788
Q gi|254780409|r 208 EGKDCILIDDIVDTGG-TLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 208 ~gr~vIIVDDii~TGg-Ti~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
++-++|-+--+-.+.- -+-+..+.|+++|...+.+++- |+..+.-.+.|.+.|+++++.+.|=
T Consensus 49 e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~vG-G~Ip~~d~~~l~~~Gv~~vf~pgt~ 112 (122)
T cd02071 49 EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG-GIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 399899996465544789999999999769998469994-5649899999997799889895889
No 140
>pfam08981 consensus
Probab=68.30 E-value=9.7 Score=18.65 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 66563578999999709
Q gi|254780409|r 166 PDVGGVVRARALAKRLG 182 (310)
Q Consensus 166 PD~G~~~ra~~~a~~L~ 182 (310)
-..||+.+++.+|+.|.
T Consensus 101 ~kfgG~~p~eiiA~tLR 117 (181)
T pfam08981 101 NKFGGISPVEIIAETLR 117 (181)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 00479798999999999
No 141
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=66.46 E-value=11 Score=18.39 Aligned_cols=119 Identities=11% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--CCCEEEEECHHH
Q ss_conf 77778765305855518851665----635789999997099799983267676321000024545--574289952132
Q gi|254780409|r 146 PILERDIKERNDISNLMVVSPDV----GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV--EGKDCILIDDIV 219 (310)
Q Consensus 146 ~~l~~~l~~~~~~~~~vVVaPD~----G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~gr~vIIVDDii 219 (310)
..+++|+.+....+++.++.+|. +..+..+...+++|..+..-. ....+.......+..+ .+-|+|++ .
T Consensus 120 ~~~~~~~~~~~g~k~vavi~~d~~~G~~~~~~~~~~~~~~G~~vv~~~--~~~~~~~Dfs~~l~~i~~~~pD~v~~---~ 194 (333)
T cd06358 120 APAIPWLAEEKGARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEE--YVPLGTTDFTSVLERIAASGADAVLS---T 194 (333)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEE--ECCCCCCCHHHHHHHHHHCCCCEEEE---C
T ss_conf 999999998379978999926834658899999999997498599998--27999978999999999749899999---3
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 033668889898752687521787205555716898886369989998178
Q gi|254780409|r 220 DTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS 270 (310)
Q Consensus 220 ~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT 270 (310)
..|.......+.+++.|-+.-.... -+.+..+....+.....+.++++..
T Consensus 195 ~~~~~~~~~~~q~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~ 244 (333)
T cd06358 195 LVGQDAVAFNRQFAAAGLRDRILRL-SPLMDENMLLASGAEAAEGLYSSSG 244 (333)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEE-ECCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 7772399999999976999874666-4567879998633575487899623
No 142
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=66.39 E-value=11 Score=18.38 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=48.1
Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99768999999999999589104448998699707888567868970899859788804679999999999986172001
Q gi|254780409|r 3 IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRI 82 (310)
Q Consensus 3 i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~i 82 (310)
+|-|.++-.-+...++++=-+++.+...-+...|....-+..+..++++|.-|-.... -|++-.+..+|+.|++-|
T Consensus 3 ~~vG~GtSy~a~~~a~~~~e~~~~i~v~~~~asef~~~~~~~~~~~~lvi~iS~SG~T----~e~i~a~~~ak~~g~~ti 78 (120)
T cd05710 3 FFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNT----KETVAAAKFAKEKGATVI 78 (120)
T ss_pred EEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCCCCCCEEEEECCCCCC----HHHHHHHHHHHHCCCEEE
T ss_conf 9999619999999999999866781799985101243698767999699998379897----899999999998699599
Q ss_pred H
Q ss_conf 1
Q gi|254780409|r 83 T 83 (310)
Q Consensus 83 t 83 (310)
.
T Consensus 79 a 79 (120)
T cd05710 79 G 79 (120)
T ss_pred E
T ss_conf 9
No 143
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=66.29 E-value=11 Score=18.37 Aligned_cols=47 Identities=32% Similarity=0.401 Sum_probs=35.3
Q ss_pred CCCEEEEE-----CHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC---CCCHHHHHHHH
Q ss_conf 57428995-----21320336688898987526875217872055---55716898886
Q gi|254780409|r 208 EGKDCILI-----DDIVDTGGTLCGAADALYEQGALSVTAYITHG---VLSSSSIERIE 258 (310)
Q Consensus 208 ~gr~vIIV-----DDii~TGgTi~~aa~~Lk~~GA~~V~~~~THg---ifs~~a~e~l~ 258 (310)
.-|.|||. ||+||-|||+.+.+ ++|-.--.++-|-| |+..++...++
T Consensus 376 ~~krviIFSPHPDDDVISMGGT~~RLv----~QGHeVHVAYqTSGNIAV~D~da~rf~~ 430 (660)
T PRK02122 376 YPKRVVIFSPHPDDDVISMGGTFRRLV----EQGHDVHVAYQTSGNIAVGDEEVIRFAR 430 (660)
T ss_pred CCCEEEEECCCCCCCEECCCHHHHHHH----HCCCEEEEEEECCCCEEECCHHHHHHHH
T ss_conf 876189968999867540547799999----6698579999657732225289999999
No 144
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=66.04 E-value=7.6 Score=19.34 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 57428995213203366888989875268752178
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~ 242 (310)
+++.++++ |.+|.+-..+++.|++.|-+.|+.
T Consensus 55 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~v~~ 86 (96)
T cd01444 55 RDRPVVVY---CYHGNSSAQLAQALREAGFTDVRS 86 (96)
T ss_pred CCCCEEEE---ECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 89818998---089668999999999828983399
No 145
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=65.74 E-value=11 Score=18.30 Aligned_cols=131 Identities=12% Similarity=0.102 Sum_probs=70.9
Q ss_pred HCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--
Q ss_conf 258862000103777787653058555188516656----35789999997099799983267676321000024545--
Q gi|254780409|r 134 FFDIPTDNLYALPILERDIKERNDISNLMVVSPDVG----GVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV-- 207 (310)
Q Consensus 134 ~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G----~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV-- 207 (310)
+|.....+-.-...+++|+.++. .++..++.+|.. ..+..+...++.|..+....+... +.......+-.+
T Consensus 112 ~Fr~~~~~~~~~~~~~~~~~~~~-~kkva~i~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~--~~~Dfs~~l~~i~~ 188 (334)
T cd06327 112 TFHWAYDTYMLANGTAPALVKAG-GKKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPL--GTSDFSSYLLQAQA 188 (334)
T ss_pred EEEECCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC--CCCCHHHHHHHHHH
T ss_conf 79844885999999999999707-9879999537456699999999999965987999996289--97556899988775
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 5742899521320336688898987526875217872055557168988863699899981788
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
.+-++|++ +..|.-.....+.+++.|-..-...+....+... ...+.....+.++.|...
T Consensus 189 ~~pD~v~~---~~~~~~~~~~~~q~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 248 (334)
T cd06327 189 SGADVLVL---ANAGADTVNAIKQAAEFGLTKGQKLAGLLLFLTD-VHSLGLDAAQGLYLTTAW 248 (334)
T ss_pred CCCCEEEE---ECCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHH-HHHHHHHHHCCEEEEECC
T ss_conf 59999999---1665479999999997499888678864677799-987527861857997056
No 146
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=65.60 E-value=11 Score=18.28 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=12.9
Q ss_pred CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 545574289952132033668889898752687521787
Q gi|254780409|r 205 GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 205 gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
|+++||.++|+ -+|+.-..+++.|++.|+++|+++
T Consensus 8 ~~l~~~~vlVI----GaG~~~~~~~~~L~~~g~~~i~v~ 42 (134)
T pfam01488 8 GDLKGKKVLLI----GAGEMARLAAKHLLSKGAKKITIA 42 (134)
T ss_pred CCCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 88148989999----960999999999997599889995
No 147
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=64.75 E-value=11 Score=18.18 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999995891
Q gi|254780409|r 10 RNLAQEICDYLHTS 23 (310)
Q Consensus 10 ~~La~~ia~~lg~~ 23 (310)
..-+.++++.|+-.
T Consensus 14 ~~~~~~l~~~l~~~ 27 (231)
T PRK00230 14 KEEALAFLDQLDPA 27 (231)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999971775
No 148
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=64.50 E-value=12 Score=18.15 Aligned_cols=201 Identities=10% Similarity=0.051 Sum_probs=104.3
Q ss_pred CCCCCCHHHHHHHHHHEECCCCEEEEE---CCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 125652147776520000267726995---15835776525886200010377778765305855518851665635789
Q gi|254780409|r 98 PSPRTPISAKLVANLITQAGADRVIML---DLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRA 174 (310)
Q Consensus 98 ~~~~e~isak~~a~ll~~~G~d~vit~---DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra 174 (310)
+.|..+.++..+..+-.+..+=+|.+- +......+-.+....+ -...+++-+ +.++|+.++++--+.-|..|.
T Consensus 67 ~Gp~s~~~~~~v~si~~~l~IP~I~~~~~~~~~~~~~~~~~~~~P~---~~~Ai~dlV-~~~~W~~v~~iYd~d~gl~~l 142 (382)
T cd06380 67 FGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQFVLQMRPS---LIQALVDLI-EHYGWRKVVYLYDSDRGLLRL 142 (382)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCC---HHHHHHHHH-HHCCCCEEEEEEECCHHHHHH
T ss_conf 9778564799999997346897686015889766666226992787---799999999-977994899999580778899
Q ss_pred HHHHHHCC---CCEEEEEC-CCCCCCCCEEECCCC--CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 99999709---97999832-676763210000245--4557428995213203366888989875268752178720555
Q gi|254780409|r 175 RALAKRLG---CLLAIVDK-RREHPGKIEVMNIIG--KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGV 248 (310)
Q Consensus 175 ~~~a~~L~---~~~~~~~K-~R~~~~~v~~~~~~g--dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgi 248 (310)
+.+-+.+. ..+.+-.. .+............- +-++..+||+|=-.+++.++.+.|+.+.-.+..-+|.+.+-.+
T Consensus 143 q~l~~~l~~~~~~i~v~~~~~~~~~~~~~~~~~L~~i~~~~~r~iIld~~~~~~~~il~qa~~lgM~~~~y~~Iit~ld~ 222 (382)
T cd06380 143 QQLLDYLREKDNKWQVTARRVDNVTDEEEFLRLLEDLDRRKEKRIVLDCESERLNKILEQIVDVGKNRKGYHYILANLGF 222 (382)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 99999986449955899984268887278999999987358749999888589999999999843026762899922421
Q ss_pred CCHHHHHHHHHCCC--C--EEEECCCCCCCHHH----H---------CCCCEE-----EEECHHHHHHHHHHHHCCC
Q ss_conf 57168988863699--8--99981788784347----4---------079859-----9811799999999871888
Q gi|254780409|r 249 LSSSSIERIEKSKM--K--ELVITDSIQPTDLV----K---------SSAKIR-----ILTIAQLMGEAINRTFEER 303 (310)
Q Consensus 249 fs~~a~e~l~~s~i--~--~iv~TnTi~~~~~~----~---------~~~ki~-----visva~llA~aI~~i~~~~ 303 (310)
.+-+ .+.+..+++ . +++..++-...+.. + ....+. ..|---++|+|++.+...+
T Consensus 223 ~~~d-l~~~~~~~~NITg~rl~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~~al~yDaV~~~a~Al~~l~~~~ 298 (382)
T cd06380 223 DDID-LSKFLFGGVNITGFQLVDNTNPTVQKFLQRWKKLDPREWPGAGTSPIKYTAALAHDAVLVMAEAFRSLRRQR 298 (382)
T ss_pred CCCC-HHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3465-676624651378998536886578999999986031346777877744166676312999999999998716
No 149
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=63.64 E-value=11 Score=18.28 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 574289952132033668889898752687521787
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
+++.+++ +|.+|+.-..+++.|++.|-++|+..
T Consensus 57 ~d~~iv~---~C~~G~rS~~aa~~L~~~G~~~V~~L 89 (101)
T cd01528 57 PDKDIVV---LCHHGGRSMQVAQWLLRQGFENVYNL 89 (101)
T ss_pred CCCCEEE---ECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8980899---83898159999999998599777984
No 150
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.28 E-value=12 Score=18.00 Aligned_cols=284 Identities=14% Similarity=0.201 Sum_probs=124.2
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCC-EEEEEECCCCCC-----------------CEEEEECCCCC-CCH
Q ss_conf 98997689999999999995891044489986997-078885678689-----------------70899859788-804
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDR-EVFVEIGENVRG-----------------EDVFIVQSTSC-PAN 61 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dG-E~~v~i~~~vrg-----------------~dV~ivqs~~~-~~n 61 (310)
+|-|.+.+.++--+.|-+.||-+-.=+..++-++| |+-.-..+++.. ........... ..+
T Consensus 3 VKrf~a~~m~eAl~~Vr~eLG~DAVILStr~v~~GvEv~Aa~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (404)
T PRK06995 3 IRKFTGATSRDALRLVREALGADAVILSNRTVDGGVEIVALADSDLAALAAAAAAAAARPRLAADAAAAVADAVKARIED 82 (404)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECEEECCCEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57997699999999999997899399979497796599999466322113565555556786655454544432245440
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECC--------CCHHH--
Q ss_conf 67999999999998617200113102330110343112565214777652000026772699515--------83577--
Q gi|254780409|r 62 DYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDL--------HAGQV-- 131 (310)
Q Consensus 62 d~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~Dl--------H~~~~-- 131 (310)
..+-++.-=+..+|+.=...+. ..+.+++ ..+.|..+.++-+|+. +|++.-+.-++ ...+.
T Consensus 83 ~~~~~l~~El~~lr~~l~~ql~------~~~~~~~--~~~~p~~~~l~~~L~~-~g~~~~la~~l~~~l~~~~~~~~~~~ 153 (404)
T PRK06995 83 IVNATVMQELGSMRGMLEEQLA------GLAWGDR--QRRDPVRGALFRHLLA-AGFSAQLVRMLLENLPAGDDAQAAMD 153 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHCCC--CCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 5589999999999999999999------8641264--4258079999999998-79999999999984703389789999
Q ss_pred --HH----------------------HCCCCCE---ECCHHHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHC
Q ss_conf --65----------------------2588620---0010377778765305855518851665---6357899999970
Q gi|254780409|r 132 --QG----------------------FFDIPTD---NLYALPILERDIKERNDISNLMVVSPDV---GGVVRARALAKRL 181 (310)
Q Consensus 132 --~~----------------------~F~ip~~---nl~~~~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L 181 (310)
+. .|=+|.- .-....+-+++... ++..++-+|.-|. ||+.--+.||+.|
T Consensus 154 ~~~~~l~~~l~~~~~~~~~~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~-~g~~kVaLIT~DTYRIgAvEQLktYa~Il 232 (404)
T PRK06995 154 WARSVLASNLPVLGSEDALMERGGVFALVGPTGVGKTTTTAKLAARCVMR-HGASKVALLTTDSYRIGGHEQLRIYGKIL 232 (404)
T ss_pred HHHHHHHHHCCCCCCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99999997466666653101147558986688876375899999999998-38983799976875478999999999875
Q ss_pred CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHH--HHHHHHHHHHCCC-CCEEEEEEC---CCCCHHHHH
Q ss_conf 9979998326767632100002454557428995213203366--8889898752687-521787205---555716898
Q gi|254780409|r 182 GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGT--LCGAADALYEQGA-LSVTAYITH---GVLSSSSIE 255 (310)
Q Consensus 182 ~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgT--i~~aa~~Lk~~GA-~~V~~~~TH---gifs~~a~e 255 (310)
|+|+-.++...+ ......+.++|++|+||-.=.+-.- +.+-.+.|.+.+. -.++++.+= +-=....++
T Consensus 233 gvPv~vv~~~~e------L~~aL~~l~~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~ 306 (404)
T PRK06995 233 GVPVHAVKDAAD------LRLALAELRNKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQ 306 (404)
T ss_pred CCEEEEECCHHH------HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 955999599999------99999970899999980999897688899999999735788528999779899999999999
Q ss_pred HHHHCCCCEEEECCCCCCC--------------------HHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 8863699899981788784--------------------34740798599811799999999871
Q gi|254780409|r 256 RIEKSKMKELVITDSIQPT--------------------DLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 256 ~l~~s~i~~iv~TnTi~~~--------------------~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
++..-+++.+|.|--=+.. ...+-.+-|++-+-..|+.+|++.-.
T Consensus 307 ~f~~~~~~~~I~TKLDEt~~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~ 371 (404)
T PRK06995 307 AYRGPGLAGCILTKLDEAASLGGALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAPR 371 (404)
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCCC
T ss_conf 84469998399830406797239999999978985998189958421210898999999862645
No 151
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=63.14 E-value=12 Score=17.98 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=107.9
Q ss_pred HHHHHHHHCCCEEEE--EEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCCHHHHHCCCC
Q ss_conf 999999958910444--899869970788856786897089985978880467999999999998-61720011310233
Q gi|254780409|r 13 AQEICDYLHTSLGKA--SVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVR-RSSARRITGVIPYF 89 (310)
Q Consensus 13 a~~ia~~lg~~l~~~--~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k-~~~A~~it~ViPY~ 89 (310)
|-.+|..||+++..+ .+..|.--+...++.+...| +.||..++. -+.--+.-.++.+. +...+|-++|+--|
T Consensus 297 A~ava~~lGv~~~~i~~~L~~~~p~~~Rlev~~g~~g--~~iIdDsYN---AnP~Sm~aALdtL~~~~~~~RrI~ILgDM 371 (824)
T PRK11930 297 CLAVALYLMYSADQITKRFARLEPVEMRLEVKEGINN--CTLINDSYN---SDLASLDIALDFLERRKQSKKKTLILSDI 371 (824)
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCC--CEEEECCCC---CCHHHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 9999998399999999998418965451379997998--099956666---99899999999997403578569998774
Q ss_pred CHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCC-CCEECCHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 011034311256521477765200002677269951583577652588-6200010377778765305855518851665
Q gi|254780409|r 90 GYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDI-PTDNLYALPILERDIKERNDISNLMVVSPDV 168 (310)
Q Consensus 90 ~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~i-p~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~ 168 (310)
.=.=|+... --+-+++|++..|+|+++.+-..-...+..|+. ...-......+.+++.....-+..+++ +
T Consensus 372 lElG~~~~~------ly~~Vg~l~~~~~i~~ligiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iLi---k 442 (824)
T PRK11930 372 LQSGQSPEE------LYRKVAQLISSAKINRVIGIGEEISSEAKKFEGIEKYFFKDTEAFLASLEKKKFSNELILI---K 442 (824)
T ss_pred HHCCCCCHH------HHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCCEEEE---E
T ss_conf 432876078------9999999999768878998188999999864577658956899997427411368977998---0
Q ss_pred CHHH-HHHHHHHHCCCCEEEEECCCCCCCCCEEECCC-------CCC-CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 6357-89999997099799983267676321000024-------545-57428995213203366888989875268752
Q gi|254780409|r 169 GGVV-RARALAKRLGCLLAIVDKRREHPGKIEVMNII-------GKV-EGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 (310)
Q Consensus 169 G~~~-ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~-------gdV-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~ 239 (310)
|+.+ +-+.+.+.|..+ .++..=++....+. .-+ .+-.++-|=--=..|.=..+.++.|.+.|+.-
T Consensus 443 Gar~~~~e~i~~~l~~~------~h~T~lEIdL~Ai~~N~~~~r~~l~p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~ 516 (824)
T PRK11930 443 GSRKFQFEQISERLELK------VHETILEINLDAIVHNLNYYRSKLKPETKMMCMVKAFAYGAGSYEIAKTLQEHRVDY 516 (824)
T ss_pred CCCCCCHHHHHHHHHHC------CCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCE
T ss_conf 55456689999999645------588589998899999999999747999769999963446634999999999849999
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCE-EEECC
Q ss_conf 1787205555716898886369989-99817
Q gi|254780409|r 240 VTAYITHGVLSSSSIERIEKSKMKE-LVITD 269 (310)
Q Consensus 240 V~~~~THgifs~~a~e~l~~s~i~~-iv~Tn 269 (310)
.-++. ...|++ |.++|++. |.+-+
T Consensus 517 ~aVA~-----~~Ea~~-LR~~Gi~~pIlvl~ 541 (824)
T PRK11930 517 LAVAV-----ADEGSE-LRKAGITLPIMVMN 541 (824)
T ss_pred EEEEE-----HHHHHH-HHHCCCCCCEEEEC
T ss_conf 99925-----999999-99749999879934
No 152
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.06 E-value=12 Score=17.97 Aligned_cols=204 Identities=17% Similarity=0.253 Sum_probs=93.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCC-----CCCCCHHHHHHHHHHEECCCCE-
Q ss_conf 9708998597888046799999999999861720011310233011034311-----2565214777652000026772-
Q gi|254780409|r 47 GEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKP-----SPRTPISAKLVANLITQAGADR- 120 (310)
Q Consensus 47 g~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~-----~~~e~isak~~a~ll~~~G~d~- 120 (310)
+.|++|+.+.-++.|. + +..+++.+..-++=+- +.|.-.+++. ..|-.-|+.+++.+|+.+|.+-
T Consensus 72 ~~d~vV~SPgI~~~~p-~------~~~a~~~~i~v~~~~e--l~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~ 142 (450)
T PRK02472 72 NFDLMVKNPGIPYDNP-M------VEEALEKGIPIITEVE--LAYLISEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGL 142 (450)
T ss_pred CCCEEEECCCCCCCCH-H------HHHHHHCCCCEEEHHH--HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 8879998998799999-9------9999986996743878--88875159789982799973199999999997499739
Q ss_pred --------------------EEEECCCCHHHHHH--C--------CCCCEECCHHHHHHHHHHHH------CCCCCEEEE
Q ss_conf --------------------69951583577652--5--------88620001037777876530------585551885
Q gi|254780409|r 121 --------------------VIMLDLHAGQVQGF--F--------DIPTDNLYALPILERDIKER------NDISNLMVV 164 (310)
Q Consensus 121 --------------------vit~DlH~~~~~~~--F--------~ip~~nl~~~~~l~~~l~~~------~~~~~~vVV 164 (310)
++.+++-|-|+... | |+.-|||+-..-+.+|++.+ ....+..|+
T Consensus 143 ~~GNiG~p~~~~~~~~~~~d~~VlE~SSfql~~~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~v~ 222 (450)
T PRK02472 143 LAGNIGYPASEVAQKATADDTLVTELSSFQLMGVETFRPHIAVITNIFEAHLDYHGTFENYVAAKWNIQKNQTEDDYLVL 222 (450)
T ss_pred EEEECCCCCHHHHHCCCCCCEEEEEECCCCHHHHCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99416764124554478987799990655141002258868999368877976634899999999999955996877999
Q ss_pred ECCCCHHHHHHHHHHHCCCCEEEEECCCC-------------------------CCCC----------------------
Q ss_conf 16656357899999970997999832676-------------------------7632----------------------
Q gi|254780409|r 165 SPDVGGVVRARALAKRLGCLLAIVDKRRE-------------------------HPGK---------------------- 197 (310)
Q Consensus 165 aPD~G~~~ra~~~a~~L~~~~~~~~K~R~-------------------------~~~~---------------------- 197 (310)
.-|.- ....++.........+..... -+|.
T Consensus 223 n~Dd~---~~~~l~~~~~~~~i~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaAia~a~~lGi~~~~ 299 (450)
T PRK02472 223 NADQE---EVKELAKQTKATVVPFSTTKEVDGAYIKDGALYFKGEKIMAADDIVLPGEHNLENILAAIAVAKLAGVSNEA 299 (450)
T ss_pred ECCCH---HHHHHHHHCCCEEEEECCCCCCCCCEEECCEEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 58879---999999757970898536754665176278799888456642323677553499999999999982998789
Q ss_pred -----------CEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH--CCCCE
Q ss_conf -----------10000245455742899521320336688898987526875217872055557168988863--69989
Q gi|254780409|r 198 -----------IEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEK--SKMKE 264 (310)
Q Consensus 198 -----------v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~--s~i~~ 264 (310)
..-++.+++++ .+..+||--+| .+-.+..+|+.-. ++|++++ .|.--+.-.+.|.. ..++.
T Consensus 300 i~~aL~~F~Gl~hRlE~v~~~~--Gv~~iNDSKaT--N~~at~~Al~~~~-~~iilI~-GG~~Kg~d~~~l~~~~~~vk~ 373 (450)
T PRK02472 300 IAEVLSTFTGVKHRLQYVGTIN--GRKFYNDSKAT--NILATQKALSGFN-QPVILLA-GGLDRGNEFDELIPYLKNVKA 373 (450)
T ss_pred HHHHHHHCCCCCEEEEEEEEEC--CEEEEECCCCC--CHHHHHHHHHCCC-CCEEEEE-ECCCCCCCHHHHHHHHHCCCE
T ss_conf 9999874488433799999974--77898268888--9999999984589-9879999-155568887999999737689
Q ss_pred EEEC
Q ss_conf 9981
Q gi|254780409|r 265 LVIT 268 (310)
Q Consensus 265 iv~T 268 (310)
+++-
T Consensus 374 v~~~ 377 (450)
T PRK02472 374 MVVF 377 (450)
T ss_pred EEEE
T ss_conf 9996
No 153
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.93 E-value=10 Score=18.45 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=66.3
Q ss_pred HHHHHHHHEECCCCEEEEECC------CCHHHHHHCC--CCCE----------ECC----HHHHHHHHHHHHCCCCCEEE
Q ss_conf 777652000026772699515------8357765258--8620----------001----03777787653058555188
Q gi|254780409|r 106 AKLVANLITQAGADRVIMLDL------HAGQVQGFFD--IPTD----------NLY----ALPILERDIKERNDISNLMV 163 (310)
Q Consensus 106 ak~~a~ll~~~G~d~vit~Dl------H~~~~~~~F~--ip~~----------nl~----~~~~l~~~l~~~~~~~~~vV 163 (310)
.+.+-+||+.+|++-++..|+ |...-...|. .+++ |+. ....++++++++++. +...
T Consensus 176 ~~eik~ll~~~Gi~~~vl~D~s~~ld~~~~~~~~~~~ggt~~~~i~~~~~A~~ni~l~~~~~~~~a~~Le~~~gi-P~~~ 254 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKV-PVET 254 (435)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCC-CEEE
T ss_conf 999999999869977994052002477667763006999869999975248499997777899999999998599-8696
Q ss_pred EECCC---CHHHHHHHHHHHCCCCEEE-EECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 51665---6357899999970997999-8326767632100002454557428995213203366888989875268752
Q gi|254780409|r 164 VSPDV---GGVVRARALAKRLGCLLAI-VDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALS 239 (310)
Q Consensus 164 VaPD~---G~~~ra~~~a~~L~~~~~~-~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~ 239 (310)
+..-- .--+|-+.+++.+|.+..- +.++|.+.- -.+....--..||.+.|+ .-+......++.|.+.|..-
T Consensus 255 ~~~P~G~~~Td~flr~l~~~~g~~~~~~i~~er~r~~-d~~~d~~~~l~gkrvai~----g~~~~~~~l~~~l~elG~~~ 329 (435)
T cd01974 255 LNMPIGVAATDEFLMALSELTGKPIPEELEEERGRLV-DAMTDSHQYLHGKKFALY----GDPDFLIGLTSFLLELGMEP 329 (435)
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCEEEEE----CCHHHHHHHHHHHHHCCCEE
T ss_conf 0776456999999999999858994699999999999-999999887429679998----88289999999999889978
Q ss_pred EEEEEECCC
Q ss_conf 178720555
Q gi|254780409|r 240 VTAYITHGV 248 (310)
Q Consensus 240 V~~~~THgi 248 (310)
+.++++.+-
T Consensus 330 ~~vv~~~~~ 338 (435)
T cd01974 330 VHVLTGNGG 338 (435)
T ss_pred EEEEECCCC
T ss_conf 999979997
No 154
>pfam06574 FAD_syn FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.
Probab=62.82 E-value=12 Score=17.95 Aligned_cols=100 Identities=21% Similarity=0.280 Sum_probs=62.8
Q ss_pred HHHCCCCCHHHC----CCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCC
Q ss_conf 131023301103----4311256521477765200002677269951583577652588620001037777876530585
Q gi|254780409|r 83 TGVIPYFGYCRQ----DRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDI 158 (310)
Q Consensus 83 t~ViPY~~YaRq----Dr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~ 158 (310)
.+|+-+-|.-|. ++. +.--.+...-.++|+.+|+|.++.++- +-.+-++++..-+-+++.+..+.
T Consensus 40 ~~viTF~phP~~~l~~~~~--~~~l~~~~~K~~~l~~~Gid~~~~i~F---------~~~~~~ls~e~Fi~~iL~~~l~~ 108 (158)
T pfam06574 40 SVVVTFEPHPREVFAPDKA--PERLTTLREKIELLAELGVDRLLVLPF---------DKEFAKLSAEEFIENILVKGLGA 108 (158)
T ss_pred EEEEEECCCHHHHHCCCCC--CHHCCCHHHHHHHHHHCCCCEEEEEHH---------HHHHHCCCHHHHHHHHHHHCCCE
T ss_conf 8999964987786087666--410157999999999669999998225---------79987499999999998716762
Q ss_pred CCEEEEECC-------CCHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 551885166-------563578999999709979998326767
Q gi|254780409|r 159 SNLMVVSPD-------VGGVVRARALAKRLGCLLAIVDKRREH 194 (310)
Q Consensus 159 ~~~vVVaPD-------~G~~~ra~~~a~~L~~~~~~~~K~R~~ 194 (310)
.-+||+.| .|.+..-+.+++..|..+.++.+....
T Consensus 109 -~~ivvG~df~FG~~r~G~~~~L~~~~~~~g~~v~~i~~~~~~ 150 (158)
T pfam06574 109 -KHVVVGFDFRFGKGRAGDVELLKELGAKYGFEVTVVPPVTLD 150 (158)
T ss_pred -EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEC
T ss_conf -489973650157999879999999998769489996989729
No 155
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=62.76 E-value=12 Score=17.94 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=4.5
Q ss_pred HHHHHHHHHCC
Q ss_conf 78999999709
Q gi|254780409|r 172 VRARALAKRLG 182 (310)
Q Consensus 172 ~ra~~~a~~L~ 182 (310)
.+|....+.+|
T Consensus 227 ~~a~~~~~~~G 237 (376)
T PRK04338 227 KKADKALENLG 237 (376)
T ss_pred HHHHHHHHHCC
T ss_conf 88888997487
No 156
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.99 E-value=9.6 Score=18.68 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEE
Q ss_conf 377778765305855518851665---63578999999709979998
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIV 188 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~ 188 (310)
..-|+.|+++ ...++.+||-|. +|++--+.++++.++||.-.
T Consensus 117 ~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 117 AGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred HHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECC
T ss_conf 9999999997--49945898505678689999999998609853167
No 157
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.55 E-value=13 Score=17.80 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=73.8
Q ss_pred HCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--
Q ss_conf 258862000103777787653058555188516656----35789999997099799983267676321000024545--
Q gi|254780409|r 134 FFDIPTDNLYALPILERDIKERNDISNLMVVSPDVG----GVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV-- 207 (310)
Q Consensus 134 ~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G----~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV-- 207 (310)
+|.....+-...+.+++|+.++.+.+++.++.+|.. ..+..+..++.+|.++.. ..+...+.......+..+
T Consensus 111 ~f~~~~~~~~~~~~~~~~~~~~~g~k~v~i~~~~~~~g~~~~~~~~~~~~~~g~~iv~--~~~~~~~~~d~s~~v~~l~~ 188 (340)
T cd06349 111 IFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVA--HEEYVPGEKDFRPTITRLRD 188 (340)
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEE--EECCCCCCCCHHHHHHHHHH
T ss_conf 7941588799999999999973498379998368617789999999999974996999--86258666757999999986
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 574289952132033668889898752687521787205555716898886369989998178
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS 270 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT 270 (310)
.|-++|++ +..+.......+.+++.|-.. ..+...+..++.-.+ +.....+.++.+..
T Consensus 189 ~~~d~v~~---~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ 246 (340)
T cd06349 189 ANPDAIIL---ISYYNDGAPIARQARAVGLDI-PVVASSSVYSPKFIE-LGGDAVEGVYTPTA 246 (340)
T ss_pred CCCCEEEE---ECCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHH-HHHHHHCCEEEEEC
T ss_conf 69999999---157535999999999769997-099854767878887-52787588699962
No 158
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=61.51 E-value=13 Score=17.79 Aligned_cols=14 Identities=0% Similarity=0.143 Sum_probs=6.3
Q ss_pred HHHHHHHHHCCCCE
Q ss_conf 16898886369989
Q gi|254780409|r 251 SSSIERIEKSKMKE 264 (310)
Q Consensus 251 ~~a~e~l~~s~i~~ 264 (310)
.+|.++|.+.++|-
T Consensus 332 ~~A~~Kl~~K~~D~ 345 (392)
T PRK05579 332 EYARAKLKRKGLDL 345 (392)
T ss_pred HHHHHHHHHCCCCE
T ss_conf 99999999759899
No 159
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.90 E-value=13 Score=17.73 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=61.0
Q ss_pred HHHHHHHHHC--CCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCC
Q ss_conf 7778765305--855518851665---63578999999709979998326767632100002454557428995213203
Q gi|254780409|r 147 ILERDIKERN--DISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDT 221 (310)
Q Consensus 147 ~l~~~l~~~~--~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~T 221 (310)
-||.++.-+. ...++.+++-|. ||+.--+.+|+.+|+|+-.+....+ ........+++|+|++|--=.+
T Consensus 193 KLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~d------l~~~l~~~~~~D~IlIDTAGrs 266 (388)
T PRK12723 193 KLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKD------LKEEITQSKDFDLVLIDTIGKS 266 (388)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHH------HHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999862676773799980787588999999999997880698578899------9999997249999999589988
Q ss_pred HHH---HHHHHHHHHHCCCC-CEEEEEECCCCCHH---HHHHHHHCCCCEEEECC
Q ss_conf 366---88898987526875-21787205555716---89888636998999817
Q gi|254780409|r 222 GGT---LCGAADALYEQGAL-SVTAYITHGVLSSS---SIERIEKSKMKELVITD 269 (310)
Q Consensus 222 GgT---i~~aa~~Lk~~GA~-~V~~~~THgifs~~---a~e~l~~s~i~~iv~Tn 269 (310)
..- +.+..+.+...+.. .++++.+-.-=..+ ..+++..-+++.+|.|-
T Consensus 267 ~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I~TK 321 (388)
T PRK12723 267 PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 5689999999999974189845999987989999999999984279998499983
No 160
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=60.72 E-value=13 Score=17.70 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEECC-CCCHHHHHHHHHCCCCEE-EECCCC
Q ss_conf 88898987526875217872055-557168988863699899-981788
Q gi|254780409|r 225 LCGAADALYEQGALSVTAYITHG-VLSSSSIERIEKSKMKEL-VITDSI 271 (310)
Q Consensus 225 i~~aa~~Lk~~GA~~V~~~~THg-ifs~~a~e~l~~s~i~~i-v~TnTi 271 (310)
+...++.|++..+-.+...-||| +++....+.|.++|++++ ++-|++
T Consensus 177 l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aL 225 (414)
T COG2100 177 LVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDAL 225 (414)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999743898428998507644459999999970875588620237
No 161
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=60.51 E-value=14 Score=17.68 Aligned_cols=134 Identities=18% Similarity=0.257 Sum_probs=72.2
Q ss_pred HHHHHHHHHEECCCCEEEEECC------CCH--------------HHHHHCCCCCEEC----CHHHHHHHHHHHHCCCCC
Q ss_conf 4777652000026772699515------835--------------7765258862000----103777787653058555
Q gi|254780409|r 105 SAKLVANLITQAGADRVIMLDL------HAG--------------QVQGFFDIPTDNL----YALPILERDIKERNDISN 160 (310)
Q Consensus 105 sak~~a~ll~~~G~d~vit~Dl------H~~--------------~~~~~F~ip~~nl----~~~~~l~~~l~~~~~~~~ 160 (310)
..+-+-+||+.+|+.-++..|+ |.. +++..=+- .-|+ .....++++++++++..
T Consensus 170 D~~eik~ll~~~Gl~v~~l~d~s~~ld~~~~~~~~~~~~ggt~~~~i~~~~~A-~~ni~~~~~~~~~~a~~L~~~~giP- 247 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNA-KATIALGEYSGRKAAKALEEKFGVP- 247 (428)
T ss_pred HHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHCCC-
T ss_conf 59999999998499169815712114776667652016899869999865659-9999988889999999999985998-
Q ss_pred EEEEECCC----CHHHHHHHHHHHCCCCEEE-EECCCCCCCCCE-EECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 18851665----6357899999970997999-832676763210-00024545574289952132033668889898752
Q gi|254780409|r 161 LMVVSPDV----GGVVRARALAKRLGCLLAI-VDKRREHPGKIE-VMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYE 234 (310)
Q Consensus 161 ~vVVaPD~----G~~~ra~~~a~~L~~~~~~-~~K~R~~~~~v~-~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~ 234 (310)
.+..|-. +--+|.+.+++.+|.+..- +.++|. .-.+ +....--..||.+.|+= -+......++.|.+
T Consensus 248 -~~~~~~P~G~~~T~~~l~~la~~~g~~~~~~~~~er~--r~~d~~~d~~~~l~gkrvai~~----~~~~~~~l~~~L~e 320 (428)
T cd01965 248 -YILFPTPIGLKATDEFLRALSKLSGKPIPEELERERG--RLLDAMLDSHFYLGGKRVAIAG----DPDLLLGLSRFLLE 320 (428)
T ss_pred -EEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEEC----CCHHHHHHHHHHHH
T ss_conf -4843776467999999999999848995599999999--9999999999860797899988----81889999999998
Q ss_pred CCCCCEEEEEECC
Q ss_conf 6875217872055
Q gi|254780409|r 235 QGALSVTAYITHG 247 (310)
Q Consensus 235 ~GA~~V~~~~THg 247 (310)
.|..-+.++++++
T Consensus 321 lG~~~~~~~~~t~ 333 (428)
T cd01965 321 MGAEPVAAVTGTD 333 (428)
T ss_pred CCCEEEEEEEECC
T ss_conf 5995679998179
No 162
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=60.46 E-value=14 Score=17.69 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCC----------CCCCHHHHH---HHHHHEECCCCEEEEECC
Q ss_conf 99999998617200113102330110343112----------565214777---652000026772699515
Q gi|254780409|r 68 LIMIDAVRRSSARRITGVIPYFGYCRQDRKPS----------PRTPISAKL---VANLITQAGADRVIMLDL 126 (310)
Q Consensus 68 l~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~----------~~e~isak~---~a~ll~~~G~d~vit~Dl 126 (310)
+.++.||+++|-+.|-+ ||.-||--+ =||+-|+|. +++.|+++-....-.++|
T Consensus 15 ~RIiRAC~ElGi~TVAV------yS~aD~dalHV~LADEavCIGea~S~kSYL~IpnI~aAA~~tG~~AiHP 80 (451)
T TIGR00514 15 LRIIRACKELGIATVAV------YSTADRDALHVLLADEAVCIGEAPSAKSYLNIPNIIAAAEITGADAIHP 80 (451)
T ss_pred HHHHHHHHHCCCCEEEE------CCHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCEECC
T ss_conf 89999888649863986------0044133234343025300686221124411588999887748807628
No 163
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=60.24 E-value=14 Score=17.65 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=21.2
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 67868970899859788804679999999999986172001131
Q gi|254780409|r 42 GENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGV 85 (310)
Q Consensus 42 ~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~V 85 (310)
..++.||.+++.=+.+ + .-..-+.+++.+++.||. |.+|
T Consensus 66 ~~~l~GKkIlLgVtGs--I--AAYKa~~LvR~L~k~Ga~-V~vv 104 (476)
T PRK13982 66 QASLGSKRITLIIGGG--I--AAYKALDLIRRLKERGAE-VRCV 104 (476)
T ss_pred CCCCCCCEEEEEECCH--H--HHHHHHHHHHHHHHCCCE-EEEE
T ss_conf 7688899799996748--9--999999999999978998-9999
No 164
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=58.09 E-value=8 Score=19.21 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=15.2
Q ss_pred EEEEECC-CCHHHHHHHHHHHCCCCE
Q ss_conf 1885166-563578999999709979
Q gi|254780409|r 161 LMVVSPD-VGGVVRARALAKRLGCLL 185 (310)
Q Consensus 161 ~vVVaPD-~G~~~ra~~~a~~L~~~~ 185 (310)
.+.++|= .|=...|+.+|+.||+.|
T Consensus 530 FLF~GPTGVGKTElak~LA~~LGv~l 555 (774)
T TIGR02639 530 FLFVGPTGVGKTELAKQLAEELGVHL 555 (774)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCHH
T ss_conf 88647989625788999999708200
No 165
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=57.96 E-value=15 Score=17.40 Aligned_cols=133 Identities=21% Similarity=0.259 Sum_probs=72.0
Q ss_pred HHHHHHHHHEECCCCEEEEECCC--CHHHHHHCCCCCEECC----HHHHHHHHHHHHCCCCCEEEEECCCC---HHHHHH
Q ss_conf 47776520000267726995158--3577652588620001----03777787653058555188516656---357899
Q gi|254780409|r 105 SAKLVANLITQAGADRVIMLDLH--AGQVQGFFDIPTDNLY----ALPILERDIKERNDISNLMVVSPDVG---GVVRAR 175 (310)
Q Consensus 105 sak~~a~ll~~~G~d~vit~DlH--~~~~~~~F~ip~~nl~----~~~~l~~~l~~~~~~~~~vVVaPD~G---~~~ra~ 175 (310)
....+-+||+.+|.+-+..++.- -..+...=+- --|+- ....+++++++++.. +.+.+.| -| -.+|-+
T Consensus 167 d~~ei~~ll~~~Gi~v~~~~~~~~~~~~i~~~~~A-~~nl~~~~~~~~~~a~~l~~~~g~-p~~~~~p-~G~~~T~~~l~ 243 (399)
T cd00316 167 DLRELKRLLEEMGIRVNALFDGGTTVEELRELGNA-KLNLVLCRESGLYLARYLEEKYGI-PYILINP-IGLEATDAFLR 243 (399)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCC-CEEEEECHHHHHHHHHHHHHHHCC-CEEECCC-CCHHHHHHHHH
T ss_conf 09999999998699058976999997999752635-389996765799999999986098-5560588-78699999999
Q ss_pred HHHHHCCCCEEE---EECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 999970997999---8326767632100002454557428995213203366888989875268752178720
Q gi|254780409|r 176 ALAKRLGCLLAI---VDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT 245 (310)
Q Consensus 176 ~~a~~L~~~~~~---~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T 245 (310)
.+++.+|.+-.+ +.++|..... .+....-..+||.+.|+=| +......++.|++.|..-+.+.++
T Consensus 244 ~i~~~~g~~~~~~~~i~~e~~~~~~-~~~~~~~~l~gkrv~i~~~----~~~~~~l~~~l~elG~~v~~~~~~ 311 (399)
T cd00316 244 KLAELFGIEKEVPEVIARERARLLD-ALADYHEYLGGKKVAIFGD----GDLLLALARFLLELGMEVVAAGTT 311 (399)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHCCCEEEEECC----CHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 9999848986448999999999999-9999988745988999888----278999999999879967799984
No 166
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=57.93 E-value=15 Score=17.40 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHH----------HCCCCCHHHCCCC----CCCCCCHHHHHHHHHHEECCCCEE-EEECCCC
Q ss_conf 999999999998617200113----------1023301103431----125652147776520000267726-9951583
Q gi|254780409|r 64 LMELLIMIDAVRRSSARRITG----------VIPYFGYCRQDRK----PSPRTPISAKLVANLITQAGADRV-IMLDLHA 128 (310)
Q Consensus 64 lmeLl~~~~a~k~~~A~~it~----------ViPY~~YaRqDr~----~~~~e~isak~~a~ll~~~G~d~v-it~DlH~ 128 (310)
+=|.+-+++.+++.|...|++ +.-.+.|++.-.. ...|..++-. .++.|..+|+++| |++|=+.
T Consensus 49 ~~e~~~~id~l~~~Gv~~v~~tGGEPllr~D~~ei~~~a~~~G~~~~l~TNG~lit~~-~a~~L~~~gl~~v~vSlDg~~ 127 (375)
T PRK05301 49 TAEWIRVLREARALGVLQLHFSGGEPLLRKDLEELVAHARRLGLYTNLITSGVGLTEA-RLAALKAAGLDHIQLSFQDSD 127 (375)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHH-HHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999999998699889961865245668999999999769758996067455799-999998509988999567798
Q ss_pred HHHHHHCCCCCEECCHHHHHHHHHHHH-CCC-CCEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 577652588620001037777876530-585-551885166563578999999709979
Q gi|254780409|r 129 GQVQGFFDIPTDNLYALPILERDIKER-NDI-SNLMVVSPDVGGVVRARALAKRLGCLL 185 (310)
Q Consensus 129 ~~~~~~F~ip~~nl~~~~~l~~~l~~~-~~~-~~~vVVaPD~G~~~ra~~~a~~L~~~~ 185 (310)
++++..|..---.....-.-.+.+++. ... =+.+|-.-+..-+.-.-.++..||++.
T Consensus 128 ~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~~la~~lGv~~ 186 (375)
T PRK05301 128 PELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADR 186 (375)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 77877763788629999999999997498169998723056888999999999729982
No 167
>PRK02947 hypothetical protein; Provisional
Probab=57.77 E-value=15 Score=17.38 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=83.6
Q ss_pred EEECCCCHHHHHHHHHHHC--CCEEEEEEEE--CCCCEEEEE-----------E--CCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 9976899999999999958--9104448998--699707888-----------5--678689708998597888046799
Q gi|254780409|r 3 IFAGNSNRNLAQEICDYLH--TSLGKASVTY--FSDREVFVE-----------I--GENVRGEDVFIVQSTSCPANDYLM 65 (310)
Q Consensus 3 i~~g~~~~~La~~ia~~lg--~~l~~~~~~~--F~dGE~~v~-----------i--~~~vrg~dV~ivqs~~~~~nd~lm 65 (310)
+|+..-+.-+++++.-+-| .+..|+.... |.+|-..-- + .-.++..||+||-|.+. .|-..+
T Consensus 46 ~fGtGHS~~~a~E~f~RAGGla~~~pI~~~~l~~~~g~~~s~~~ER~~g~a~~il~~~~i~~~Dvlii~SnSG-~N~~pV 124 (247)
T PRK02947 46 VFGTGHSHMAAEEVFYRAGGLAPFNPILEPSLMLHEGAVASSYLERIEGYAKLILDRYPIRPGDVLIIVSNSG-RNAVPI 124 (247)
T ss_pred EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCEEEEEECCC-CCHHHH
T ss_conf 9888516489998741147643313003411025478666531222550999999867999998899996787-776899
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCHHHCC-CCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCC--------
Q ss_conf 999999999861720011310233011034-31125652147776520000267726995158357765258--------
Q gi|254780409|r 66 ELLIMIDAVRRSSARRITGVIPYFGYCRQD-RKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFD-------- 136 (310)
Q Consensus 66 eLl~~~~a~k~~~A~~it~ViPY~~YaRqD-r~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~-------- 136 (310)
|+ +..+|+.|++-| .+--+.||++- .++..|.-+ ..+|+ +++|.|.|.--...+
T Consensus 125 E~---A~~ak~~G~~VI--aiTS~~~s~~~~srH~SGkkL--~d~aD----------iviDN~~p~GDA~l~i~g~~~kv 187 (247)
T PRK02947 125 EM---ALEAKERGAKVI--AVTSLAYSKSVASRHSSGKRL--YEVAD----------VVIDNGAPKGDAVLEIEGLEAKV 187 (247)
T ss_pred HH---HHHHHHCCCEEE--EEECHHHHCCCCCCCCCCCEE--HHHCC----------EEEECCCCCCCEEEEECCCCCCC
T ss_conf 99---999998699699--996678816789989766711--56366----------78657999876589878977775
Q ss_pred CCCEECCHHHH-------HHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHC
Q ss_conf 86200010377-------778765305855518851665-6357899999970
Q gi|254780409|r 137 IPTDNLYALPI-------LERDIKERNDISNLMVVSPDV-GGVVRARALAKRL 181 (310)
Q Consensus 137 ip~~nl~~~~~-------l~~~l~~~~~~~~~vVVaPD~-G~~~ra~~~a~~L 181 (310)
.|+-.+.+.-+ .++.+.++ +.++|+..|.+. |+-++-..+-+++
T Consensus 188 gp~STi~g~~i~n~i~~e~~~~L~~~-G~~pPv~~S~N~~ggde~N~~l~~~Y 239 (247)
T PRK02947 188 GPTSTVVGVAILNAIFAEAAEELVER-GIDPPVFLSANIDGGDEHNRALVEKY 239 (247)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEECCCCCCCHHHHHHHHHHH
T ss_conf 75778999999999999999999977-99998676278888389999999999
No 168
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=57.13 E-value=15 Score=17.31 Aligned_cols=126 Identities=21% Similarity=0.129 Sum_probs=66.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEEC
Q ss_conf 89708998597888046799999999999861720011310233011034311256521477765200002677269951
Q gi|254780409|r 46 RGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLD 125 (310)
Q Consensus 46 rg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~D 125 (310)
.|..+++|+|-.+.+++.+.++-.... .....|+|- ..+|....-++..+.+.++..|+..|+.... ++
T Consensus 28 ~g~~~vvV~sa~~~it~~l~~~~~~~~---~~~~~~~t~-------~~~~~i~~~g~~~~~~~l~~~L~~~g~~a~~-l~ 96 (248)
T cd02115 28 EGGRVVVVHGAGPQITDELLAHGELLG---YARGLRITD-------RETDALAAMGEGMSNLLIAAALEQHGIKAVP-LD 96 (248)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHH---HHCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EE
T ss_conf 899989996984453299998653543---313678998-------9999999999999999999999856998169-86
Q ss_pred CCCHHH---HHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-------------HHHHHHHHHHHCCCCEEE
Q ss_conf 583577---65258862000103777787653058555188516656-------------357899999970997999
Q gi|254780409|r 126 LHAGQV---QGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVG-------------GVVRARALAKRLGCLLAI 187 (310)
Q Consensus 126 lH~~~~---~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-------------~~~ra~~~a~~L~~~~~~ 187 (310)
.....+ ..++..++..+... .+.+.+ +...+.|++|..+ +=.-|..+|..|+++..+
T Consensus 97 ~~~~~~~~~~~~~~~~v~~~~~~-~l~~~l----~~~~ipVi~g~~~~~~~~~~~l~~~~sD~~Aa~lA~~l~A~~li 169 (248)
T cd02115 97 LTQAGFASPNQGHVGKITKVSTD-RLKSLL----ENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLV 169 (248)
T ss_pred EEECCEECCCCCCCCCCCCCCHH-HHHHHH----HCCCCEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCHHH
T ss_conf 55323313664443210226899-999877----41676681363455567776330788789999999994966553
No 169
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=56.78 E-value=15 Score=17.50 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 80467999999999998617200113102
Q gi|254780409|r 59 PANDYLMELLIMIDAVRRSSARRITGVIP 87 (310)
Q Consensus 59 ~~nd~lmeLl~~~~a~k~~~A~~it~ViP 87 (310)
|..-++-|+..-...++++|-. |+.+-|
T Consensus 19 ~TG~~l~El~~Py~~l~~aG~~-VdiASp 46 (231)
T cd03147 19 NTGVFFSEALHPFNVFREAGFE-VDFVSE 46 (231)
T ss_pred CCCCCHHHHHHHHHHHHHCCCE-EEEECC
T ss_conf 4422599999999999987987-999889
No 170
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=56.25 E-value=16 Score=17.22 Aligned_cols=190 Identities=22% Similarity=0.271 Sum_probs=120.5
Q ss_pred EECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCC------------
Q ss_conf 98699707888567868970899859788804679999999999986172001131023301103431------------
Q gi|254780409|r 30 TYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRK------------ 97 (310)
Q Consensus 30 ~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~------------ 97 (310)
+=|.+|=+..++++.--|+.|=||.|. |.. |=.++-|.||| ..||+ |=|.||.
T Consensus 134 kgf~EGWv~P~PP~krTGkkVAVVGSG--PAG------LAaA~qLnrAG-H~VTV------fER~DR~GGLL~YGIPnmK 198 (517)
T TIGR01317 134 KGFQEGWVQPRPPKKRTGKKVAVVGSG--PAG------LAAADQLNRAG-HTVTV------FEREDRVGGLLRYGIPNMK 198 (517)
T ss_pred HHHCCCCEECCCCCCCCCCEEEEECCC--HHH------HHHHHHHHHCC-CCEEE------EECCCCCCCCCCCCCCCCC
T ss_conf 131178630468874478668997567--579------99999985358-83899------7436788863024888743
Q ss_pred CCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 12565214777652000026772699515835776525886200010377778765305855518851665635789999
Q gi|254780409|r 98 PSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARAL 177 (310)
Q Consensus 98 ~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~ 177 (310)
-..+|.|--|+ ++|++=|+|-+.=+++=.-. -+-.+.||+-..+=++.|++.+| -||.+. |...-+.+
T Consensus 199 LdK~e~v~RRi--~~l~aEG~~FvtnteiGdWd----enskitnlsk~di~~~~L~~~fD---AVVLa~---Ga~~pRDL 266 (517)
T TIGR01317 199 LDKEEIVDRRI--DLLEAEGVDFVTNTEIGDWD----ENSKITNLSKKDISADELKEDFD---AVVLAT---GATKPRDL 266 (517)
T ss_pred CCHHHHHHHHH--HHHHHCCCCCCCCCCCCCCC----CCCCEECCCCCCCCHHHHHHHCC---EEEEEC---CCCCCCCC
T ss_conf 37388999999--99874784201783004653----44420002234268799871469---389833---78860103
Q ss_pred H---HHC-CCCEEEEE---CCCCCCC-CCEE-E-CCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9---970-99799983---2676763-2100-0-0245455742899521320336688898987526875217872055
Q gi|254780409|r 178 A---KRL-GCLLAIVD---KRREHPG-KIEV-M-NIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHG 247 (310)
Q Consensus 178 a---~~L-~~~~~~~~---K~R~~~~-~v~~-~-~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THg 247 (310)
. +.| |+.||+=. .+|...+ +... . ...-+.+||+|||| -.|-|=.-++..-..+||++|+=+=.||
T Consensus 267 pI~GREL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvI----GGGDTG~DCvGTs~RhGA~sV~qFE~mP 342 (517)
T TIGR01317 267 PIPGRELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVI----GGGDTGADCVGTSLRHGAASVHQFEIMP 342 (517)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEE----CCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 557766466037865546754856088536667887354228678997----5787562245632355435523025688
Q ss_pred CCC
Q ss_conf 557
Q gi|254780409|r 248 VLS 250 (310)
Q Consensus 248 ifs 250 (310)
=..
T Consensus 343 ~PP 345 (517)
T TIGR01317 343 KPP 345 (517)
T ss_pred CCC
T ss_conf 877
No 171
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=55.01 E-value=17 Score=17.08 Aligned_cols=128 Identities=23% Similarity=0.235 Sum_probs=73.4
Q ss_pred HCCC-CCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHH---HHHHHCCCCEEEEECCCCCCCCCEEECCCCCC-
Q ss_conf 2588-62000103777787653058555188516656-357899---99997099799983267676321000024545-
Q gi|254780409|r 134 FFDI-PTDNLYALPILERDIKERNDISNLMVVSPDVG-GVVRAR---ALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV- 207 (310)
Q Consensus 134 ~F~i-p~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ra~---~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV- 207 (310)
||.. |.+.. ....+++|++++ ..+++.++.+|.. |...++ ...+++|..+..- .....+.......+..+
T Consensus 114 ~fr~~~~~~~-~~~~~a~~~~~~-g~kkvail~~~~~yG~~~~~~~~~~~~~~G~~vv~~--~~~~~~~~Dfs~~l~ki~ 189 (312)
T cd06346 114 FFRTAPSDAL-QGQALAQLAAER-GYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNV--VAHEEGKSSYSSEVAAAA 189 (312)
T ss_pred EEEEECCHHH-HHHHHHHHHHHH-CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEE--EECCCCCCCHHHHHHHHH
T ss_conf 9997467278-899999999982-996489999577266999999999999879989999--966999845599999998
Q ss_pred -CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf -57428995213203366888989875268752178720555571689888636998999817
Q gi|254780409|r 208 -EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD 269 (310)
Q Consensus 208 -~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn 269 (310)
.+-++|++ +..+.......+.+++.|-+.- .+.+.|..+...++......++.++.+.
T Consensus 190 ~~~pD~v~~---~~~~~~~~~~~kq~~~~G~~~~-~~~~~g~~~~~~~~~~g~~~~~g~~~~~ 248 (312)
T cd06346 190 AGGPDALVV---IGYPETGSGILRSAYEQGLFDK-FLLTDGMKSDSFLPADGGYILAGSYGTS 248 (312)
T ss_pred HCCCCEEEE---ECCCHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHCCEEEEC
T ss_conf 669999999---4673479999999997599997-7964455687899987799748568927
No 172
>pfam02633 Creatininase Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyses the hydrolysis of creatinine to creatine.
Probab=54.99 E-value=17 Score=17.08 Aligned_cols=97 Identities=22% Similarity=0.308 Sum_probs=54.3
Q ss_pred CCCCEEEE--ECCCC-----CCCH-HHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHH--CCCCCCCCCCHHHHHHH----
Q ss_conf 68970899--85978-----8804-67999999999998617200113102330110--34311256521477765----
Q gi|254780409|r 45 VRGEDVFI--VQSTS-----CPAN-DYLMELLIMIDAVRRSSARRITGVIPYFGYCR--QDRKPSPRTPISAKLVA---- 110 (310)
Q Consensus 45 vrg~dV~i--vqs~~-----~~~n-d~lmeLl~~~~a~k~~~A~~it~ViPY~~YaR--qDr~~~~~e~isak~~a---- 110 (310)
++..++.| +.|+- -|.+ |.++--.+.-.++++.+. .+|+|-++|.- ..+.|-+.-+++...+.
T Consensus 13 ~~~~~~vilPvGs~EqHGpHLPlgtD~~ia~~ia~~va~~~~~---~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~ 89 (235)
T pfam02633 13 LKRGDTAILPVGSTEQHGPHLPLGTDTLIAEAIAERVAERLGD---VLVLPTIPYGYSPEHMGFPGTISLSPETLIALLR 89 (235)
T ss_pred HCCCCEEEEEEECEECCCCCCCCHHHHHHHHHHHHHHHHHCCC---EEEECCCCCCCCHHHCCCCCEEEECHHHHHHHHH
T ss_conf 4589989996657304588666124899999999999986799---6996887567786772889736509999999999
Q ss_pred ---HHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHH
Q ss_conf ---200002677269951583577652588620001037777876530
Q gi|254780409|r 111 ---NLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKER 155 (310)
Q Consensus 111 ---~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~ 155 (310)
+-|...|+.+++.++-|-. |..+....++.++..
T Consensus 90 di~~sl~~~Gf~~ivilNgHgG-----------N~~~l~~~~~~l~~~ 126 (235)
T pfam02633 90 DIGRSLARHGFRRLVIVNGHGG-----------NIALLQEAARELRAE 126 (235)
T ss_pred HHHHHHHHCCCCEEEEEECCCC-----------CHHHHHHHHHHHHHH
T ss_conf 9999999779758999916877-----------489999999999977
No 173
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=54.47 E-value=16 Score=17.15 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=26.8
Q ss_pred CCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 245455742899521320336688898987526875217872
Q gi|254780409|r 203 IIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 203 ~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
..|+++|+.+++| -+|..-..+++.|++.|+++|+++-
T Consensus 176 ~~~~l~~~~vlvi----GaGem~~l~~k~L~~~g~~~i~v~n 213 (429)
T PRK00045 176 IFGDLSGKKVLVI----GAGEMGELVAKHLAEKGVRKITVAN 213 (429)
T ss_pred HCCCCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6478120659997----6748999999999855998499975
No 174
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=52.86 E-value=13 Score=17.76 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=26.5
Q ss_pred ECCCCHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 768999999999999589104448998699
Q gi|254780409|r 5 AGNSNRNLAQEICDYLHTSLGKASVTYFSD 34 (310)
Q Consensus 5 ~g~~~~~La~~ia~~lg~~l~~~~~~~F~d 34 (310)
+|.+-.++|+++|+.++.|..+++..+|--
T Consensus 59 TGvGKTeIARrLAkl~~aPFvkveATk~TE 88 (442)
T PRK05201 59 TGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (442)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 886678999999998489858752131000
No 175
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=52.58 E-value=18 Score=16.83 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 4557428995213203366888989875268752178720
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT 245 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T 245 (310)
++++|+|+|+ -+||+-..++..|.+.|+++|+++.-
T Consensus 16 ~~~~k~vlIl----GaGGaarai~~aL~~~g~~~I~i~nR 51 (155)
T cd01065 16 ELKGKKVLIL----GAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8579999998----67589999999999719982288608
No 176
>PRK09814 hypothetical protein; Provisional
Probab=52.55 E-value=18 Score=16.83 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEE--------EECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 6899999999999958910444899869970788--------85678689708998597888046799999999999861
Q gi|254780409|r 6 GNSNRNLAQEICDYLHTSLGKASVTYFSDREVFV--------EIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRS 77 (310)
Q Consensus 6 g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v--------~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~ 77 (310)
|+-.+.-.+.|++.+|..- ..+.++++..... .+...++..|++++|.-.. +..... +.++..+|+.
T Consensus 17 g~KAk~Dv~~i~~~~G~~~--l~~~~~~~~~~~~~~~~~~~~~i~~~l~~gDivi~QyP~~--~~~~~~-~~l~~~lk~~ 91 (337)
T PRK09814 17 GLKAKNDVTDIAKQLGFKE--LGIYFYNDKSDSLAERSQRIDGILASLNRGDIVVFQYPTY--NGFEFD-LLFIDKLKKK 91 (337)
T ss_pred HHHHHHHHHHHHHHCCCEE--EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC--CHHHHH-HHHHHHHHHC
T ss_conf 7888999999999779968--5665046630029999999999995779999999978987--078899-9999999975
Q ss_pred CCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHC---CC---CCEECCHHHHHHHH
Q ss_conf 7200113102330110343112565214777652000026772699515835776525---88---62000103777787
Q gi|254780409|r 78 SARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFF---DI---PTDNLYALPILERD 151 (310)
Q Consensus 78 ~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F---~i---p~~nl~~~~~l~~~ 151 (310)
++|-|+ +|--+..-|..+- .....+-.-++|+. +|-+| .|++++..++ .+ |+..+...+-+..-
T Consensus 92 ~~K~i~-~IHDie~LR~~~~----~~~~~~~ei~~ln~--aD~iI---vhn~~M~~~L~~~G~~~~kiv~l~ifDYl~~~ 161 (337)
T PRK09814 92 QIKIII-LIHDIEPLRFGKS----NYYLMKEEIDMLNL--SDVVI---VHNKKMTDWLVEEGVTVDKIIDQEIFDYLVDI 161 (337)
T ss_pred CCEEEE-EECCCHHHHCCCC----CHHHHHHHHHHHHH--CCEEE---ECCHHHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 987999-9776589865677----70367999999852--89999---79999999999779986864785787758875
Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHC-CCCEEEE
Q ss_conf 653058555188516656357899999970-9979998
Q gi|254780409|r 152 IKERNDISNLMVVSPDVGGVVRARALAKRL-GCLLAIV 188 (310)
Q Consensus 152 l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L-~~~~~~~ 188 (310)
-.+....++.+++| |...++.-+.+.. +.++.+.
T Consensus 162 ~~~~~~~~k~I~fA---GNL~Ks~fL~~~~~~~~l~lY 196 (337)
T PRK09814 162 DLETPSFQKKIIFA---GNLSKSPFLKKWSENIKLNVF 196 (337)
T ss_pred CCCCCCCCCEEEEE---CCHHHHHHHHHCCCCCCEEEE
T ss_conf 55665677439981---672434678847668877997
No 177
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=52.54 E-value=18 Score=16.83 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=70.8
Q ss_pred CCCEECCHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--CCC
Q ss_conf 86200010377778765305855518851665----635789999997099799983267676321000024545--574
Q gi|254780409|r 137 IPTDNLYALPILERDIKERNDISNLMVVSPDV----GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV--EGK 210 (310)
Q Consensus 137 ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~----G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~gr 210 (310)
.+..+..... +++|+.++.+.+.+.++++|- +..+..+...+++|..+..-. ....+.......+-.+ .+-
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~--~~~~g~~Dfs~~l~kik~a~p 190 (359)
T TIGR03407 114 GAAPNQQIIP-AVDYLLSKKGAKRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGED--YTPLGHTDFQTIINKIKAFKP 190 (359)
T ss_pred CCCCHHHHHH-HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCHHHHHHHHHHCCC
T ss_conf 2682799999-9999998569987999945873058999999999997599737788--257987558999999997699
Q ss_pred EEEEECHHHCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 2899521320336688898987526875-217872055557168988863699899981
Q gi|254780409|r 211 DCILIDDIVDTGGTLCGAADALYEQGAL-SVTAYITHGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 211 ~vIIVDDii~TGgTi~~aa~~Lk~~GA~-~V~~~~THgifs~~a~e~l~~s~i~~iv~T 268 (310)
|+|+. ...|+......+.+++.|-+ +.......++. .+....+.....+..+++
T Consensus 191 D~v~~---~~~~~~~~~~~kq~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~ 245 (359)
T TIGR03407 191 DVVFN---TLNGDSNVAFFKQLKNAGITAKDVPVVSFSVA-EEEIRGIGPENLVGHLAA 245 (359)
T ss_pred CEEEE---ECCCCCHHHHHHHHHHHCCCCCCCEEEEEECC-HHHHHHCCCCCCCCEEEE
T ss_conf 99999---37462057999999982899767758985057-898874061022235898
No 178
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=52.47 E-value=18 Score=16.82 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=32.2
Q ss_pred EECC-HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 0001-0377778765305855518851665635789999997099799983267
Q gi|254780409|r 140 DNLY-ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRR 192 (310)
Q Consensus 140 ~nl~-~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R 192 (310)
|-.+ ++|.|.+.+|+++.+ |+= .=..||++--+++|+++..+|---
T Consensus 121 DvFDiP~PgLpkpiR~hf~D---Vme----dP~eWArKcVK~fGAdmvTiHlIs 167 (401)
T TIGR00381 121 DVFDIPMPGLPKPIREHFED---VME----DPAEWARKCVKEFGADMVTIHLIS 167 (401)
T ss_pred EECCCCCCCCCHHHHHHHHH---HHC----CHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 51368757876677776566---302----833588888876276638864433
No 179
>PRK06740 histidinol-phosphatase; Validated
Probab=52.32 E-value=18 Score=16.81 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=92.5
Q ss_pred CCCEE-EEEEEECCCCEEEEE-ECCCCCCCEEEEECCCC------------------CCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89104-448998699707888-56786897089985978------------------88046799999999999861720
Q gi|254780409|r 21 HTSLG-KASVTYFSDREVFVE-IGENVRGEDVFIVQSTS------------------CPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 21 g~~l~-~~~~~~F~dGE~~v~-i~~~vrg~dV~ivqs~~------------------~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
|+++- .++...||++|-.++ +...- .=| |+|.|.+ .++++-..+-+-.+..+-++|-=
T Consensus 139 gi~lKLGIEaDY~pG~E~~l~~lL~~Y-pfD-YvIGSVHFl~gWgFDnPe~~~~~~~~Dl~~iy~~YF~~ve~~A~SGLF 216 (338)
T PRK06740 139 GVTLKLGIEADYFIGGEQELQSLLALG-DFD-YVIGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAVRSELF 216 (338)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCC-CCC-EEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 873588877404788599999997449-975-599888860787888978998885089999999999999999975997
Q ss_pred HHHH---HCCCCCHHHCCCCCCCCCCH--HHHHHHHHHEECCCCEEEEECCCCHHHHH-HCCCCCEECCHHHHHHHHHHH
Q ss_conf 0113---10233011034311256521--47776520000267726995158357765-258862000103777787653
Q gi|254780409|r 81 RITG---VIPYFGYCRQDRKPSPRTPI--SAKLVANLITQAGADRVIMLDLHAGQVQG-FFDIPTDNLYALPILERDIKE 154 (310)
Q Consensus 81 ~it~---ViPY~~YaRqDr~~~~~e~i--sak~~a~ll~~~G~d~vit~DlH~~~~~~-~F~ip~~nl~~~~~l~~~l~~ 154 (310)
.|.. .+--|+| | .+...+ -.+-.++.+..+| +.+++- .| ++.-|+..+++++.+.+.+.+
T Consensus 217 DIiGHlDlIK~Fg~-r-----p~~~~~~~~~e~~a~aik~~~----~avEIN----AGLg~RkPV~EiYPs~~~Le~~~~ 282 (338)
T PRK06740 217 DIIAHLDNIKVFNY-R-----LDENEQLSYYKEIARALVETN----TATEIN----AGLYYRYPVREMCPSPLYLQVLAK 282 (338)
T ss_pred CEECCHHHHHHCCC-C-----CCCHHHHHHHHHHHHHHHHCC----CEEEEE----CCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 26236216766188-8-----991258999999999999749----379982----675346874456887999999997
Q ss_pred HCCCCCEEEEECCCCH-------HHHHHHHHHHCCCC-EEEEECCCC
Q ss_conf 0585551885166563-------57899999970997-999832676
Q gi|254780409|r 155 RNDISNLMVVSPDVGG-------VVRARALAKRLGCL-LAIVDKRRE 193 (310)
Q Consensus 155 ~~~~~~~vVVaPD~G~-------~~ra~~~a~~L~~~-~~~~~K~R~ 193 (310)
. .=|++++-|+-. .+.|..+++.+|.. ++++.|++.
T Consensus 283 ~---gIPItlgSDAH~Pe~VG~~~~ea~~llk~~Gytela~F~kRkR 326 (338)
T PRK06740 283 H---GVPITLSSDAHYPNDLGKYVEENVKTLRNHGISHLATFTKRVR 326 (338)
T ss_pred C---CCCEEEECCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf 6---9987851688996785665999999999749825899715632
No 180
>pfam01012 ETF Electron transfer flavoprotein domain. This family includes the homologous domain shared between the alpha and beta subunits of the electron transfer flavoprotein.
Probab=52.11 E-value=19 Score=16.78 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCC
Q ss_conf 80467999999999998617200113102330110343112565214777652000026772699515835776525886
Q gi|254780409|r 59 PANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIP 138 (310)
Q Consensus 59 ~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip 138 (310)
..+..-.|++-....+++..-.+++++.. |.. ....+..+..+|+|+++.++ .+...+|
T Consensus 12 ~l~~~~~eal~~A~~l~~~~g~~v~~v~~-------------G~~--~~~~~~~~~~~Gad~v~~~~--~~~~~~~---- 70 (161)
T pfam01012 12 KLNPVDLEALEAARQLAEALGGEVTAVVV-------------GPV--PAAAEALLAAMGADKVLVVE--DPALAGY---- 70 (161)
T ss_pred EECHHHHHHHHHHHHHHHHCCCEEEEEEE-------------CCC--HHHHHHHHHHCCCCEEEEEC--CHHHCCC----
T ss_conf 84888999999999999863985999995-------------394--79999998755999999978--7121246----
Q ss_pred CEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 20001037777876530585551885166563578999999709979
Q gi|254780409|r 139 TDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLL 185 (310)
Q Consensus 139 ~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~ 185 (310)
+.......+++.+++. + .+.++.+-...+-..+..+|.+||.++
T Consensus 71 -~~~~~a~~l~~~i~~~-~-~~~Vl~~~s~~g~~~~~rlA~~L~~~~ 114 (161)
T pfam01012 71 -DAEAYAAALAALIKKE-G-PDLVLAGATSIGKDLAPRLAALLGAPL 114 (161)
T ss_pred -CHHHHHHHHHHHHHCC-C-CCEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf -8688999999975413-9-979997040787614699999959986
No 181
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=51.84 E-value=19 Score=16.76 Aligned_cols=129 Identities=9% Similarity=0.171 Sum_probs=73.8
Q ss_pred HHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--CC
Q ss_conf 5258862000103777787653058555188516656-35789999997099799983267676321000024545--57
Q gi|254780409|r 133 GFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVG-GVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV--EG 209 (310)
Q Consensus 133 ~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~g 209 (310)
.+|.....+-.....+++|+.+. ..+++.++++|-. +...++.+.+.++..+... .....+.......+..+ .+
T Consensus 110 ~~Fr~~~~~~~~~~~~~~~~~~~-~~kkvail~~d~~~g~~~~~~~~~~~~~~vv~~--~~~~~~~~Df~~~l~~i~~~~ 186 (333)
T cd06332 110 NFFRTSWQNDQVHEAMGKYAADK-GYKKVVIIAPDYAAGKDAVAGFKRTFKGEVVEE--VYTPLGQLDFSAELAQIRAAK 186 (333)
T ss_pred CEEEECCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEE--EECCCCCCCHHHHHHHHHHCC
T ss_conf 66971598699999999999971-897799995786476999999999727041346--754788655899999998669
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 42899521320336688898987526875-217872055557168988863699899981
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQGAL-SVTAYITHGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~GA~-~V~~~~THgifs~~a~e~l~~s~i~~iv~T 268 (310)
-|+|++ ...|+......+.+++.|-+ ++..+...++.....++...+ ..+.++.+
T Consensus 187 pD~v~~---~~~~~~~~~~~~q~~~~g~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~ 242 (333)
T cd06332 187 PDAVFV---FLPGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQDTLPAQGD-AAVGVLTA 242 (333)
T ss_pred CCEEEE---ECCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH-HHCCEEEE
T ss_conf 799999---357537999999999749987861898605478889985676-41767998
No 182
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.70 E-value=19 Score=16.74 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEE
Q ss_conf 7778765305855518851665---6357899999970997999
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAI 187 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~ 187 (310)
-||.|++++ ..++.+++-|. ||+.--+.+|+.+|+|+..
T Consensus 94 KLA~~~~~~--~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~ 135 (270)
T PRK06731 94 KMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA 135 (270)
T ss_pred HHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEC
T ss_conf 999999867--990899983888888999999999981995354
No 183
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=51.68 E-value=19 Score=16.74 Aligned_cols=136 Identities=23% Similarity=0.202 Sum_probs=68.4
Q ss_pred HHHHHHEECCCCEEEEEC--CCC--HHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHHCC
Q ss_conf 765200002677269951--583--577652588620001037777876530585551885166563-578999999709
Q gi|254780409|r 108 LVANLITQAGADRVIMLD--LHA--GQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGG-VVRARALAKRLG 182 (310)
Q Consensus 108 ~~a~ll~~~G~d~vit~D--lH~--~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~-~~ra~~~a~~L~ 182 (310)
-.++.|..+|+|.|+.-= .|. .+++..+++|+.++ .+...++++ ..+.+++-|++|..-- .++.+.+-+..|
T Consensus 55 ~~~~~l~~~g~d~iviaCnt~~~~~~~~~~~~~ipvi~~--~~a~~~a~~-~~~~~ri~vl~t~~t~~~~~~~~~l~~~g 131 (212)
T pfam01177 55 EAARRLAKAGADAIVIACNTAHALAGELREATDIPVIGI--VEAALKALA-LLGAKRVGVLATYGTIVSGLYQELLAEAG 131 (212)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCEEEH--HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 999999867999999917659999999998729989854--789999999-71898089995642443799999999759
Q ss_pred CCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 979998326767632100002454557428995213203366888989875268752178720555571689888636
Q gi|254780409|r 183 CLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKS 260 (310)
Q Consensus 183 ~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s 260 (310)
....... ........ ...|.+.+. .-..+.++++.+.+.|+..|...|||--+--+..++++..
T Consensus 132 ~~~~~~~---~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~d~ivLgCT~l~~~~~~~~~l~~~ 195 (212)
T pfam01177 132 IEVVAPA---IRLGIVEV-LELGRIEEA----------SVEALAAALERLAEDGADAVILGCTELPLLLELIEALEPE 195 (212)
T ss_pred CCEEECC---CCCCCHHH-HHHCCCCHH----------HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9278524---35532559-992899999----------9999999998875289899998588828799999998650
No 184
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=51.24 E-value=19 Score=16.70 Aligned_cols=146 Identities=21% Similarity=0.173 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHH---H--CCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHE-
Q ss_conf 678689708998597888-0467999999999998---6--17200113102330110343112565214777652000-
Q gi|254780409|r 42 GENVRGEDVFIVQSTSCP-ANDYLMELLIMIDAVR---R--SSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLIT- 114 (310)
Q Consensus 42 ~~~vrg~dV~ivqs~~~~-~nd~lmeLl~~~~a~k---~--~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~- 114 (310)
-..+-|.+||| +.-|-. .++-+-|-+.-+-+++ | .+-++-. .-.|.+.-....==.|=-.|.+-+.+-
T Consensus 30 f~l~~g~~VyI-C~eC~~lc~~~l~e~~~~~~~~~~gerd~~~~~~~~----~~~~~~~~~~~~lP~P~eik~~LD~YVI 104 (452)
T TIGR00382 30 FKLIAGPGVYI-CDECIELCHDILEEELNSLLALKTGERDGTRLRRKE----SKEVEEELELSELPTPKEIKAHLDEYVI 104 (452)
T ss_pred EEEECCCCCEE-CHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHH----HHHHHHHHHHHCCCCCHHHHHHHCCCCC
T ss_conf 99972898227-512899888877665420000002543102356542----0245666665247882799997213612
Q ss_pred -ECCCCEEEEECCCCH--HHHHHC-CCCCEECCHHHHHHHHHHHH-CCCCCEEEEECCCCH-HHHHHHHHHHCCCCEEEE
Q ss_conf -026772699515835--776525-88620001037777876530-585551885166563-578999999709979998
Q gi|254780409|r 115 -QAGADRVIMLDLHAG--QVQGFF-DIPTDNLYALPILERDIKER-NDISNLMVVSPDVGG-VVRARALAKRLGCLLAIV 188 (310)
Q Consensus 115 -~~G~d~vit~DlH~~--~~~~~F-~ip~~nl~~~~~l~~~l~~~-~~~~~~vVVaPD~G~-~~ra~~~a~~L~~~~~~~ 188 (310)
.=-+.+|++|=..++ ++.-.- +-..||-++.-. .+++.+- ..-.|..+|+|=--| .-.|+.+|+.|++||++.
T Consensus 105 GQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nve-lehleeVEL~KSNILLiGPTGSGKTLLAqTLA~~L~VPfAiA 183 (452)
T TIGR00382 105 GQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVE-LEHLEEVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 183 (452)
T ss_pred CCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf 3101052543241124666532430455588400023-544444333006624546888526899999998738874211
Q ss_pred ECCCC
Q ss_conf 32676
Q gi|254780409|r 189 DKRRE 193 (310)
Q Consensus 189 ~K~R~ 193 (310)
+-+--
T Consensus 184 DATtL 188 (452)
T TIGR00382 184 DATTL 188 (452)
T ss_pred CHHHH
T ss_conf 11102
No 185
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=51.07 E-value=18 Score=16.95 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=25.0
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 574289952132033668889898752687521787
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
++|.+|+ +|.+|+.-..|++.|+++|-++|+-.
T Consensus 60 ~~~~iv~---~C~~G~RS~~aa~~L~~~Gy~~v~~l 92 (103)
T cd01447 60 EDKPFVF---YCASGWRSALAGKTLQDMGLKPVYNI 92 (103)
T ss_pred CCCEEEE---ECCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf 8887999---86998059999999998598443884
No 186
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.81 E-value=8.7 Score=18.96 Aligned_cols=26 Identities=31% Similarity=0.165 Sum_probs=13.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 55188516656357899999970997
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCL 184 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~ 184 (310)
..++=|-+|..++.-++.-+.+++..
T Consensus 69 ~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 69 SRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 17999936989999999888860884
No 187
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=50.63 E-value=20 Score=16.63 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHCCC
Q ss_conf 999999999995891
Q gi|254780409|r 9 NRNLAQEICDYLHTS 23 (310)
Q Consensus 9 ~~~La~~ia~~lg~~ 23 (310)
+.+.+.++++.++-.
T Consensus 9 ~~~~~~~i~~~~~~~ 23 (216)
T cd04725 9 DEEFALALIDALGPY 23 (216)
T ss_pred CHHHHHHHHHHHCCC
T ss_conf 999999999973785
No 188
>KOG0814 consensus
Probab=49.89 E-value=15 Score=17.35 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHHEECCCCEEEEECCCCH
Q ss_conf 777652000026772699515835
Q gi|254780409|r 106 AKLVANLITQAGADRVIMLDLHAG 129 (310)
Q Consensus 106 ak~~a~ll~~~G~d~vit~DlH~~ 129 (310)
++-=++++...|.+-+..++-|-+
T Consensus 44 ~~RD~qlikdLgl~LiYa~NTH~H 67 (237)
T KOG0814 44 VSRDAQLIKDLGLDLIYALNTHVH 67 (237)
T ss_pred CCCHHHHHHHCCCEEEEEECCEEE
T ss_conf 530579998618001442304032
No 189
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=49.85 E-value=20 Score=16.55 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=20.4
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5574289952132033668889898752687521787
Q gi|254780409|r 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 207 V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
-|||.+|||+- .|.+-.++++.|.+.|-.+|+..
T Consensus 63 ~Kgk~VViV~~---~g~~a~~fa~~Lvk~Gf~rVcvL 96 (105)
T cd01525 63 YKGKIIVIVSH---SHKHAALFAAFLVKCGVPRVCIL 96 (105)
T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 58982999889---98679999999998499869993
No 190
>pfam01972 SDH_sah Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.
Probab=49.78 E-value=20 Score=16.55 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=47.6
Q ss_pred HHHHHHHEECCCCEEEEECCCCHHHHHHCCCCC---EECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHH-HHHHHHHCC
Q ss_conf 776520000267726995158357765258862---0001037777876530585551885166563578-999999709
Q gi|254780409|r 107 KLVANLITQAGADRVIMLDLHAGQVQGFFDIPT---DNLYALPILERDIKERNDISNLMVVSPDVGGVVR-ARALAKRLG 182 (310)
Q Consensus 107 k~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~---~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~r-a~~~a~~L~ 182 (310)
+.+.++=+. .-.||||+ .|.....+||.+|+ -|+.-+..+.++++...+.-+.-++---.||.-. |..+|+.|.
T Consensus 39 ~~i~~ie~k-r~srVItl-IHRQE~is~lGiP~~ryI~ieDSE~VLRAIr~Tp~d~PIDlIlHTPGGlvLAa~QIA~AL~ 116 (286)
T pfam01972 39 RCIREIERK-RGSRVITM-IHRQESIGFLGIPIYKFITIEDSEEILRAIRLTPKDMPIDLIIHTPGGLALAATQIAKALK 116 (286)
T ss_pred HHHHHHHHH-HCCEEEEE-EEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 999999997-38869998-5201246543852743226232899999997599999857998579616899999999999
No 191
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=49.09 E-value=21 Score=16.48 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=19.8
Q ss_pred HHHHHHHHHEECCCC-EEEEECCCC
Q ss_conf 477765200002677-269951583
Q gi|254780409|r 105 SAKLVANLITQAGAD-RVIMLDLHA 128 (310)
Q Consensus 105 sak~~a~ll~~~G~d-~vit~DlH~ 128 (310)
|+-.+|.||+..|.+ +|+++|+.-
T Consensus 46 S~l~~A~~l~~~~~~~~VigiDi~i 70 (202)
T pfam04989 46 SALFFASMLELLGSDGKVLGIDIDI 70 (202)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8999999999738998799995764
No 192
>TIGR00070 hisG ATP phosphoribosyltransferase; InterPro: IPR001348 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions . ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the two forms of ATP phosphoribosyltransferase: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity . The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined , . The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplamsic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process.
Probab=48.90 E-value=21 Score=16.46 Aligned_cols=45 Identities=33% Similarity=0.536 Sum_probs=24.0
Q ss_pred CCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE--CCCCC
Q ss_conf 32100002454557428995213203366888989875268752178720--55557
Q gi|254780409|r 196 GKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT--HGVLS 250 (310)
Q Consensus 196 ~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T--Hgifs 250 (310)
|.+|..+..| +..-|.| =|+++||.|| |+.|.+.|-.++. |..|-
T Consensus 165 GSvE~Ap~~G-~PeAD~I--~DLvstG~TL-------~~NgL~~id~i~~ks~a~LI 211 (317)
T TIGR00070 165 GSVELAPLIG-IPEADAI--VDLVSTGTTL-------RENGLREIDVILDKSSARLI 211 (317)
T ss_pred CCEEEECCCC-CCCCCEE--EEEECCHHHH-------HHCCCEEEEEEECCEEEEEE
T ss_conf 6386001278-9730002--5421112789-------75396889888424037884
No 193
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=48.14 E-value=21 Score=16.38 Aligned_cols=62 Identities=16% Similarity=0.306 Sum_probs=50.5
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 5742899521320336688898987526875217872055557168988863699899981788784
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPT 274 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~ 274 (310)
.|-|+|+.|.| +..+|..+++.++.++. .+.+=|+=|+-..+ ++.+...++|= |++=.+.+.
T Consensus 205 AGADiImLDNm--~p~~~~~av~~~~~~~p-~~~~EaSGGitl~n-~~~ya~~gVD~-IS~G~lThs 266 (276)
T TIGR00078 205 AGADIIMLDNM--KPEEIKEAVELLKGRNP-NVLVEASGGITLDN-IEEYAETGVDV-ISSGALTHS 266 (276)
T ss_pred CCCCEEECCCC--CHHHHHHHHHHHHHCCC-EEEEEEECCCCHHH-HHHHHHCCCCE-EECCCHHHE
T ss_conf 09959980698--94799999999970299-08999836998789-99984089758-832741120
No 194
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=48.01 E-value=21 Score=16.37 Aligned_cols=161 Identities=18% Similarity=0.229 Sum_probs=85.5
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEE
Q ss_conf 86897089985978880467999999999998617200113102330110343112565214777652000026772699
Q gi|254780409|r 44 NVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIM 123 (310)
Q Consensus 44 ~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit 123 (310)
.+.|+.+..+ +..|.-- --+-+--|+.+.|..-|. + .-++-....||++ +..++.|+.+|+|-++.
T Consensus 41 ~L~gk~v~~l--F~epSTR---TR~SFe~A~~~LGg~~i~-----l--~~~~s~~~kgEsi--~DTarvls~y~~D~iv~ 106 (304)
T PRK00856 41 LLRGKTVANL--FFEPSTR---TRLSFELAAKRLGADVIN-----F--SASTSSVSKGETL--ADTIRTLSAMGADAIVI 106 (304)
T ss_pred CCCCCEEEEE--EECCCCH---HHHHHHHHHHHCCCEEEE-----C--CCCCCCCCCCCCH--HHHHHHHHHHCCCEEEE
T ss_conf 5689889999--7158740---578899999838966987-----0--6664655689789--99999999727979999
Q ss_pred ECCCCH---HHHHHCCCCCEEC------CHHHHHHHHH--HHH-CCCC--CEEEEECCC-CHHHHH-HHHHHHCCCCEEE
Q ss_conf 515835---7765258862000------1037777876--530-5855--518851665-635789-9999970997999
Q gi|254780409|r 124 LDLHAG---QVQGFFDIPTDNL------YALPILERDI--KER-NDIS--NLMVVSPDV-GGVVRA-RALAKRLGCLLAI 187 (310)
Q Consensus 124 ~DlH~~---~~~~~F~ip~~nl------~~~~~l~~~l--~~~-~~~~--~~vVVaPD~-G~~~ra-~~~a~~L~~~~~~ 187 (310)
=..... .+..+.++|+-|- ++...|++.+ .+. ...+ ++++++.=. +.+.+. -..+..+|..+.+
T Consensus 107 R~~~~~~~~~~a~~s~vPVINagdg~~eHPtQaLaDl~Ti~e~~g~l~glki~~vGD~~n~rv~~Sl~~~~~~~g~~~~~ 186 (304)
T PRK00856 107 RHPQSGAARLLAEKVNVPVINAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRL 186 (304)
T ss_pred ECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 16865699999986899889799997768469998799999863877787699984787456799999999976986999
Q ss_pred EECCCCCC----CCCEEECCCCC-CCCCEEEEECHH
Q ss_conf 83267676----32100002454-557428995213
Q gi|254780409|r 188 VDKRREHP----GKIEVMNIIGK-VEGKDCILIDDI 218 (310)
Q Consensus 188 ~~K~R~~~----~~v~~~~~~gd-V~gr~vIIVDDi 218 (310)
+...--.+ +.++......+ ++|.|||..-++
T Consensus 187 ~~P~~~~p~~~~~~~~~~~d~~~av~~aDvvy~trv 222 (304)
T PRK00856 187 IAPPTLLPEGIELGVRVHTDLEEVIEEADVVMMLRV 222 (304)
T ss_pred ECCCCCCCHHHCCCEEEECCHHHHHCCCCEEEEEHH
T ss_conf 778533884446983998699999626989998557
No 195
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=47.99 E-value=21 Score=16.37 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCC
Q ss_conf 8689708998597888046799999999999861720011310233011034
Q gi|254780409|r 44 NVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQD 95 (310)
Q Consensus 44 ~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqD 95 (310)
++.|+.|.+-=+.+--.=+..++ +++.+++.||. |.|-|.++-|.
T Consensus 2 ~L~gK~I~lgvTGSiaay~kv~~---~ir~L~~~GA~----V~~ImS~~a~~ 46 (195)
T PRK08305 2 SLKGKRIGFGLTGSHCTYEEVMP---QIEKLVAEGAE----VRPIVSYTVQT 46 (195)
T ss_pred CCCCCEEEEEECCHHHHHHHHHH---HHHHHHHCCCE----EEEEECHHHHH
T ss_conf 76898899996727998999999---99999987996----99997544775
No 196
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=47.62 E-value=22 Score=16.33 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHC
Q ss_conf 78880467999999999998617200113102330110343112565214777652000026772699515835776525
Q gi|254780409|r 56 TSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFF 135 (310)
Q Consensus 56 ~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F 135 (310)
-....++.-.|++- ++|+.|. .+++|+. |.. ....+.-+...|+|+|+.++- +....|
T Consensus 9 ~~g~l~~~s~Ell~---~A~~L~~-~v~avv~-------------G~~--~~~~~~~l~~~Ga~~V~~~~~--~~l~~~- 66 (168)
T cd01715 9 RNGELRELTLEAVT---AARKLGG-EVTALVI-------------GSG--AEAVAAALKAYGADKVLVAED--PALAHY- 66 (168)
T ss_pred CCCEECHHHHHHHH---HHHHHCC-CEEEEEE-------------CCC--CHHHHHHHHHCCCCEEEEECC--CCCCCC-
T ss_conf 69999889999999---9998599-7699995-------------785--446799986569889999568--102045-
Q ss_pred CCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 8862000103777787653058555188516656357899999970997999
Q gi|254780409|r 136 DIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAI 187 (310)
Q Consensus 136 ~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~ 187 (310)
+ .-.-...+.+.+.+. + ...++++-..-|...+-.+|-+|+.++..
T Consensus 67 ~----~~~~~~~l~~~~~~~-~-p~~Vl~~~t~~grdlaprlAa~l~a~~vs 112 (168)
T cd01715 67 L----AEPYAPALVALAKKE-K-PSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred C----HHHHHHHHHHHHHCC-C-CCEEEECCCHHHHHHHHHHHHHHCCCEEC
T ss_conf 7----789999999987523-9-97899648875878999999986987244
No 197
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=47.47 E-value=20 Score=16.52 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 5455742899521320336688898987526875217872
Q gi|254780409|r 205 GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 205 gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
-|++||.|+++ -.|-|-.-+++.--.+||++|+|+=
T Consensus 288 ~~~~Gk~VVVL----GGGDTaMDCvRTaiR~GA~~VTC~Y 323 (480)
T TIGR01318 288 IDVEGKRVVVL----GGGDTAMDCVRTAIRLGAKKVTCAY 323 (480)
T ss_pred CCCCCCEEEEE----CCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 23477668985----8887525788999981776131266
No 198
>KOG1481 consensus
Probab=46.89 E-value=20 Score=16.59 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=19.2
Q ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20336688898987526875217872055
Q gi|254780409|r 219 VDTGGTLCGAADALYEQGALSVTAYITHG 247 (310)
Q Consensus 219 i~TGgTi~~aa~~Lk~~GA~~V~~~~THg 247 (310)
+-||||+...++.||++.-.+|.++..-|
T Consensus 221 ~GTGGTiaGVskyLkek~~~~v~~~laDP 249 (391)
T KOG1481 221 TGTGGTIAGVSKYLKEKSDGRVAVFLADP 249 (391)
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68885128789987632788448999679
No 199
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=46.51 E-value=23 Score=16.22 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHEECCCCEEEE--ECCCCHHHHHHCCCCCE-----ECCHHHHHHHHHHHHCCCCCEEEEE-----CC
Q ss_conf 565214777652000026772699--51583577652588620-----0010377778765305855518851-----66
Q gi|254780409|r 100 PRTPISAKLVANLITQAGADRVIM--LDLHAGQVQGFFDIPTD-----NLYALPILERDIKERNDISNLMVVS-----PD 167 (310)
Q Consensus 100 ~~e~isak~~a~ll~~~G~d~vit--~DlH~~~~~~~F~ip~~-----nl~~~~~l~~~l~~~~~~~~~vVVa-----PD 167 (310)
.|-...+.-+|..+..+| .+|+. .|++.|+++.+|+.+-. -|.....+.+.+... ...+.-|+. |+
T Consensus 543 EGKSt~a~nLA~~~A~~G-~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~-~~~~ldvl~aG~~p~n 620 (726)
T PRK09841 543 SGKTFVSSTLAAVIAQSD-QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHF-GKGGFDVITRGQVPPN 620 (726)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCC-CCCCEEEEECCCCCCC
T ss_conf 977999999999998479-95999828877710776159999987799838999889933027-9899899828999979
Q ss_pred CC---HHHHHHHHHHHCCC--CEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 56---35789999997099--79998326767632100002454557428995213203366888989875268752178
Q gi|254780409|r 168 VG---GVVRARALAKRLGC--LLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 (310)
Q Consensus 168 ~G---~~~ra~~~a~~L~~--~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~ 242 (310)
.. +.+|-..+-+.|.. ++.++|- .--.-+.-..+++...+..+++|.--..+-+.+..+.+.|.+.|++-+-+
T Consensus 621 P~elL~s~~~~~ll~~l~~~yD~IIiDt--PPvl~v~Da~~l~~~~D~~l~Vvr~g~T~~~~~~~a~~~l~~~~~~v~G~ 698 (726)
T PRK09841 621 PSELLMRDRMRQLLEWANDHYDLVIVDT--PPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGA 698 (726)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCEEEEEC--CCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999587699999999981399999919--99653415999999789599999799688999999999999789975899
Q ss_pred EE
Q ss_conf 72
Q gi|254780409|r 243 YI 244 (310)
Q Consensus 243 ~~ 244 (310)
+.
T Consensus 699 vl 700 (726)
T PRK09841 699 IL 700 (726)
T ss_pred EE
T ss_conf 98
No 200
>PRK03881 hypothetical protein; Provisional
Probab=46.48 E-value=23 Score=16.22 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=52.0
Q ss_pred ECCCCHHHHHHHHHHH---CCCEEEEEEEE----CCCCE----EEEE---ECCC-CCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 7689999999999995---89104448998----69970----7888---5678-6897089985978880467999999
Q gi|254780409|r 5 AGNSNRNLAQEICDYL---HTSLGKASVTY----FSDRE----VFVE---IGEN-VRGEDVFIVQSTSCPANDYLMELLI 69 (310)
Q Consensus 5 ~g~~~~~La~~ia~~l---g~~l~~~~~~~----F~dGE----~~v~---i~~~-vrg~dV~ivqs~~~~~nd~lmeLl~ 69 (310)
.-..+.+|+++|++.. |++.+.+..+. ..+.| ..|- +.+. ...+-|.|-.|.-+ .+ +++.
T Consensus 86 ~~~~D~eL~~~I~~~A~~~gipv~~~~~~~~~~~~~~~~LDHGt~VPLyFL~k~~~~~~lV~is~~~ls--~e---~ly~ 160 (467)
T PRK03881 86 DFPNDLELVEEIIEEAKKEGIPVVEVDEELLRRYGLSGELDHGAIVPLYFLRKAGSQFKLVHISYGLLS--DE---ELYK 160 (467)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCEEEEECCCCC--HH---HHHH
T ss_conf 733769999999998876599768604200244567766775424209988765678876998269999--89---9999
Q ss_pred HHHHHHH---CCCCHHHHHC------------CCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCC
Q ss_conf 9999986---1720011310------------233011034311256521477765200002677269951583
Q gi|254780409|r 70 MIDAVRR---SSARRITGVI------------PYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHA 128 (310)
Q Consensus 70 ~~~a~k~---~~A~~it~Vi------------PY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~ 128 (310)
+-.++++ ..-+++.+|. || +|+- .-+.-=+.+.++|+..-++.++.+|.-.
T Consensus 161 fG~~I~~a~e~~~rr~~~IASGDLSHrL~~dgPy-Gy~P-------~G~~FD~~i~~~l~~gd~~~ll~id~~l 226 (467)
T PRK03881 161 FGMAIRDAAEESKRKVALIASGDLSHRLTEDGPY-GYHP-------DGEEFDKALVDLLRKGDVEGIINIDEDL 226 (467)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-CCCC-------CHHHHHHHHHHHHHCCCHHHHHCCCHHH
T ss_conf 9999999999728868999825701034889998-8897-------5177899999998657988873189777
No 201
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=46.47 E-value=23 Score=16.22 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 4557428995213203366888989875268752178720555
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGV 248 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgi 248 (310)
+.+||+|+++ -.|.|-.-+++..+.+||++|+++.--.-
T Consensus 465 ~~~GK~VvVI----GGGntAmDcaRtA~RlGA~~Vt~vYRR~~ 503 (654)
T PRK12769 465 NTAGLNVVVL----GGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 5557558998----88724699999999759983660454672
No 202
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=46.32 E-value=23 Score=16.20 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=37.9
Q ss_pred CCEEEEECHHHCCHHHHHH-HHHHHHHCCCCCEEEEEECCCCC-----HHHHHHHHHCCCCEEEECCCC
Q ss_conf 7428995213203366888-98987526875217872055557-----168988863699899981788
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCG-AADALYEQGALSVTAYITHGVLS-----SSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~-aa~~Lk~~GA~~V~~~~THgifs-----~~a~e~l~~s~i~~iv~TnTi 271 (310)
+-++|.+--+.-.+.+.+. ..+.|+++|.+.+.+++-=.+-. ..-.++|.+.|++.++...|-
T Consensus 50 ~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~di~vvvGG~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~ 118 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTP 118 (128)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 999999823202562489999999996799999899789867783104899999996696857499879
No 203
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=45.87 E-value=19 Score=16.72 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=6.6
Q ss_pred HHHEECCCCEEEEECCC
Q ss_conf 20000267726995158
Q gi|254780409|r 111 NLITQAGADRVIMLDLH 127 (310)
Q Consensus 111 ~ll~~~G~d~vit~DlH 127 (310)
+....+|++.++.++..
T Consensus 70 ~a~~~LGv~~~~~l~~~ 86 (237)
T COG2120 70 AAARVLGVRETIFLGFP 86 (237)
T ss_pred HHHHHCCCCCEEECCCC
T ss_conf 99997499863877788
No 204
>pfam12303 SNDH Membrane bound L-sorbosone dehydrogenase. This domain family is found in bacteria, and is approximately 140 amino acids in length. There are two conserved sequence motifs: LPNGD and LLRD. SNDH converts L-sorbosone to 2-keto-L-gulonic acid.
Probab=45.56 E-value=9.6 Score=18.69 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=33.2
Q ss_pred EEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCH------HHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 48998699707888567868970899859788804------679999999999986172001131
Q gi|254780409|r 27 ASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPAN------DYLMELLIMIDAVRRSSARRITGV 85 (310)
Q Consensus 27 ~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~n------d~lmeLl~~~~a~k~~~A~~it~V 85 (310)
..+.+|++|=.+.|-.--+-+.||+|..|-.++.. +.+|.+..--......||.|||+.
T Consensus 53 l~V~~fA~gL~hPRwlyvLPNGDVLVAEs~~p~~~~~~~i~~~i~~~~m~~aga~~~SanRItLL 117 (140)
T pfam12303 53 LKVTAFATGLDHPRWLYVLPNGDVLVAESNAPPKPPKGKIRGWIMKLVMKRAGAGGPSANRITLL 117 (140)
T ss_pred CEEHHHHHCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 59478742478973478778898898815788888763078899999998605889998847986
No 205
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=45.44 E-value=23 Score=16.11 Aligned_cols=129 Identities=20% Similarity=0.218 Sum_probs=68.5
Q ss_pred HHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHH
Q ss_conf 99998617200113102330110343112565214777652000026772699515835776525886200010377778
Q gi|254780409|r 71 IDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILER 150 (310)
Q Consensus 71 ~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~ 150 (310)
++.+-++||..||.=. -......-..+.+...|+..=+++.|++| ++. .+
T Consensus 77 i~~fa~agad~It~H~--------------E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp---------~~~-------i~ 126 (220)
T COG0036 77 IEAFAKAGADIITFHA--------------EATEHIHRTIQLIKELGVKAGLVLNPATP---------LEA-------LE 126 (220)
T ss_pred HHHHHHHCCCEEEEEE--------------CCCCCHHHHHHHHHHCCCEEEEEECCCCC---------HHH-------HH
T ss_conf 9999981999899971--------------27768999999999759857799789997---------789-------99
Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHH
Q ss_conf 76530585551885166563578999999709979998326767632100002454557428995213203366888989
Q gi|254780409|r 151 DIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAAD 230 (310)
Q Consensus 151 ~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~ 230 (310)
|+.+..|.=-+.=|-|..||-++-...-+++..--.+. ++ +|...|=|| ||-=.+.++
T Consensus 127 ~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~----------------~~-~~~~~IeVD-----GGI~~~t~~ 184 (220)
T COG0036 127 PVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMI----------------DE-RLDILIEVD-----GGINLETIK 184 (220)
T ss_pred HHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH----------------CC-CCCEEEEEE-----CCCCHHHHH
T ss_conf 89865789999857799866314799999999999974----------------02-477599996-----896988899
Q ss_pred HHHHCCCCCEEEEEECCCCCHHH
Q ss_conf 87526875217872055557168
Q gi|254780409|r 231 ALYEQGALSVTAYITHGVLSSSS 253 (310)
Q Consensus 231 ~Lk~~GA~~V~~~~THgifs~~a 253 (310)
.+.++||. ++++.| ++|.++.
T Consensus 185 ~~~~AGad-~~VaGS-alF~~~d 205 (220)
T COG0036 185 QLAAAGAD-VFVAGS-ALFGADD 205 (220)
T ss_pred HHHHCCCC-EEEEEE-EEECCCC
T ss_conf 99973999-999977-7867811
No 206
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=44.35 E-value=24 Score=16.00 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=102.9
Q ss_pred CCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEEC---C--HHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 25652147776520000267726995158357765258862000---1--037777876530585551885166563578
Q gi|254780409|r 99 SPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNL---Y--ALPILERDIKERNDISNLMVVSPDVGGVVR 173 (310)
Q Consensus 99 ~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl---~--~~~~l~~~l~~~~~~~~~vVVaPD~G~~~r 173 (310)
.+|.|. +|+.|..+|.++.+.||.-......--.+|+-|+ - +...+.+-+.. ..+-.+|.|-++ ++.
T Consensus 63 ~GRNP~----l~~~l~~~G~~g~VaVD~kEA~~l~~~gl~vghvGHLVQiP~~~v~~iv~~--~PeviTVfS~ek--A~e 134 (382)
T cd06811 63 FGRNPF----LARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGHLVQIPRHQVPAVLAM--RPEVITVYSLEK--ARE 134 (382)
T ss_pred CCCCHH----HHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH--CCCEEEEEEHHH--HHH
T ss_conf 589989----999999739985689609999999985998344157136857689999974--997899920999--999
Q ss_pred HHHHHHHCCCCEEEEECCCC-----CCCCCEEECC-------------CC-C---CCCCEEEEECHHH------CCHHHH
Q ss_conf 99999970997999832676-----7632100002-------------45-4---5574289952132------033668
Q gi|254780409|r 174 ARALAKRLGCLLAIVDKRRE-----HPGKIEVMNI-------------IG-K---VEGKDCILIDDIV------DTGGTL 225 (310)
Q Consensus 174 a~~~a~~L~~~~~~~~K~R~-----~~~~v~~~~~-------------~g-d---V~gr~vIIVDDii------~TGgTi 225 (310)
....|.++|..=.++-|.-+ .+|...+..+ .| . |.-=-|++.|+-- ..=.|+
T Consensus 135 is~aA~~~g~~Q~illrV~~~~D~~Y~GQegGf~l~eL~~v~~~i~~l~gi~i~GvT~FPc~L~d~~~~~~~pT~N~~Tl 214 (382)
T cd06811 135 ISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGLTSFPCFLYDEEQGDIAPTPNLFTL 214 (382)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEECEEEEEECCCCCCCCCCCCHHHH
T ss_conf 99999981973326999964898463775377548999999999972899679664320068774777951158529999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEE----EECCCCCCCHHHHCCCCEEEEEC
Q ss_conf 8898987526875217872055557168988863699899----98178878434740798599811
Q gi|254780409|r 226 CGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKEL----VITDSIQPTDLVKSSAKIRILTI 288 (310)
Q Consensus 226 ~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~i----v~TnTi~~~~~~~~~~ki~visv 288 (310)
.+|.+.|+++|-.. .-.-.-+--|...+..|.+.|..+- -.|-|+|-.....+..|...+=+
T Consensus 215 ~~A~~~L~~~G~~~-~qvN~PSaTs~~tlp~La~~G~Th~EPGHaLTGTtP~ha~~d~pE~pA~vYv 280 (382)
T cd06811 215 LKAKELLEKRGIEI-LQLNAPSATSCATLPLLAEYGVTHGEPGHALTGTTPLHAVGDQPEKPAMVYV 280 (382)
T ss_pred HHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 99999999759862-7950685114765999998488667887412478855456778876139999
No 207
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=44.23 E-value=24 Score=15.99 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=18.0
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 45574289952132033668889898752687521
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
.++..|++|+=..-..-..+.++++.+|+.|++-|
T Consensus 57 ~~~~~d~~i~iS~sg~~~~~~~~~~~ak~~g~~ii 91 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVI 91 (139)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 59999999997686363789999999998699799
No 208
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=44.09 E-value=20 Score=16.60 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=26.4
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---HHHHHHHHHCCCCEEEECC
Q ss_conf 320336688898987526875217872055557---1689888636998999817
Q gi|254780409|r 218 IVDTGGTLCGAADALYEQGALSVTAYITHGVLS---SSSIERIEKSKMKELVITD 269 (310)
Q Consensus 218 ii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs---~~a~e~l~~s~i~~iv~Tn 269 (310)
++.|+|| ++.|++.|-. +...|+-.. ++..+.+++..++-||.|-
T Consensus 16 l~AT~GT----a~~L~~~Gi~---v~~l~~ki~~g~~~i~~~i~~~~IdlVInt~ 63 (90)
T smart00851 16 LVATGGT----AKFLREAGLP---VKTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred EEECCHH----HHHHHHCCCC---CEEEECCCCCCCCCHHHHHCCCCEEEEEEEC
T ss_conf 9981258----9999975997---1043024435610489981978879999846
No 209
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=43.99 E-value=25 Score=15.97 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=35.2
Q ss_pred ECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEC-HHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 1665635789999997099799983267676321000024545574289952-132033668889898752687521787
Q gi|254780409|r 165 SPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILID-DIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 165 aPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVD-Dii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
-|...|...|+.+++. |.+..++- |++--.-+....-=+=|-|.|.-| -++.--||..-|. ..++.|. .++++
T Consensus 154 RP~~eG~~~ak~L~~~-gI~~~~I~---Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~-~A~e~~~-Pf~v~ 227 (301)
T COG1184 154 RPRGEGRIMAKELRQS-GIPVTVIV---DSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLAL-AARELRV-PFYVV 227 (301)
T ss_pred CCCCHHHHHHHHHHHC-CCCEEEEE---CHHHHHHHHHCCEEEECCCCEECCCCEEECCCHHHHHH-HHHHHCC-CEEEE
T ss_conf 8862379999999974-99559985---15889999748989988201214773786033699999-9998399-88998
Q ss_pred EE
Q ss_conf 20
Q gi|254780409|r 244 IT 245 (310)
Q Consensus 244 ~T 245 (310)
+-
T Consensus 228 ae 229 (301)
T COG1184 228 AE 229 (301)
T ss_pred EE
T ss_conf 54
No 210
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=43.97 E-value=22 Score=16.28 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=16.1
Q ss_pred HHHHHH-HHHHCCCCCEEEEECCCC---HHHHHHHHHHHCCCCEEE
Q ss_conf 777787-653058555188516656---357899999970997999
Q gi|254780409|r 146 PILERD-IKERNDISNLMVVSPDVG---GVVRARALAKRLGCLLAI 187 (310)
Q Consensus 146 ~~l~~~-l~~~~~~~~~vVVaPD~G---~~~ra~~~a~~L~~~~~~ 187 (310)
.-||.| ++++ ..++|.+||-|.= |+.==+.++++.|+|+..
T Consensus 120 gKLA~~ll~kk-~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~ 164 (439)
T TIGR00959 120 GKLALYLLKKK-EGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFA 164 (439)
T ss_pred HHHHHHHHHHH-CCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999986-3897034032103478999999976752887110
No 211
>PRK08841 aspartate kinase; Validated
Probab=43.40 E-value=18 Score=16.89 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=36.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHC-CCCCCCCCCHHHHHHHHHHEECCCCEE
Q ss_conf 8970899859788804679999999999986172001131023301103-431125652147776520000267726
Q gi|254780409|r 46 RGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQ-DRKPSPRTPISAKLVANLITQAGADRV 121 (310)
Q Consensus 46 rg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRq-Dr~~~~~e~isak~~a~ll~~~G~d~v 121 (310)
.|.++++|-|-..-.-|.|++|.--++. .+.+|+ |..-.-||-+|++++|..|+..|++..
T Consensus 32 ~~~~vvVVvSAm~g~Td~Ll~la~~i~~---------------~~~~relD~lls~GE~lS~~lla~~L~~~G~~a~ 93 (392)
T PRK08841 32 DGNQVVVVVSAMAGETNRLLGLAKQVDS---------------VPTARELDVLLSAGEQVSMALLAMTLNKLGYKAR 93 (392)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 6998999962899968999999986325---------------9998999999976599999999999986799757
No 212
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=43.38 E-value=25 Score=15.91 Aligned_cols=122 Identities=22% Similarity=0.266 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHCCCCHH--HHHCCCCCHHHCCCCC-------CCC-C--C-----HHHHHHHHHHEECCCCEEEEECC
Q ss_conf 9999999999986172001--1310233011034311-------256-5--2-----14777652000026772699515
Q gi|254780409|r 64 LMELLIMIDAVRRSSARRI--TGVIPYFGYCRQDRKP-------SPR-T--P-----ISAKLVANLITQAGADRVIMLDL 126 (310)
Q Consensus 64 lmeLl~~~~a~k~~~A~~i--t~ViPY~~YaRqDr~~-------~~~-e--~-----isak~~a~ll~~~G~d~vit~Dl 126 (310)
.=|++.++.++.+.|.++| |-=-|-+ |+|=.. .+| + . +-..-.|+-|..+|.++| .+-|
T Consensus 53 ~eEi~~i~~~~~~lGi~kiRlTGGEPLl---R~di~~li~~l~~~~gi~~v~lTTNG~lL~~~a~~Lk~aGL~ri-NISL 128 (334)
T PRK00164 53 LEEIERLVRAFAALGVRKIRLTGGEPLL---RKDLEDIIARLAALPGIRDLALTTNGYLLARRAAALKDAGLTRV-NVSL 128 (334)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCC---CCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCEE-EEEE
T ss_conf 9999999999997096279860788432---35789999998632797517884448899999999998599869-9711
Q ss_pred CCHHHHHHCCC-CCEECCH-HHHHHHHHHHHCC-C-CCEEEE-ECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 83577652588-6200010-3777787653058-5-551885-1665635789999997099799983
Q gi|254780409|r 127 HAGQVQGFFDI-PTDNLYA-LPILERDIKERND-I-SNLMVV-SPDVGGVVRARALAKRLGCLLAIVD 189 (310)
Q Consensus 127 H~~~~~~~F~i-p~~nl~~-~~~l~~~l~~~~~-~-~~~vVV-aPD~G~~~ra~~~a~~L~~~~~~~~ 189 (310)
|+-.-+.|..+ ....+.. ..-+...+..... . =|.|++ +-+..-+.---.|+...+.++-+++
T Consensus 129 DsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~vKiN~V~~~g~N~dEi~~li~~~~~~~i~vRFIE 196 (334)
T PRK00164 129 DSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPVKVNAVLMKGVNDDEIPDLLRWAKDRGIQLRFIE 196 (334)
T ss_pred EECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 31899999998489975999999999995898761689996379898999999999964696599999
No 213
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=43.32 E-value=25 Score=15.90 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=20.5
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCC-CEE
Q ss_conf 5742899521320336688898987526875-217
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGAL-SVT 241 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~-~V~ 241 (310)
+++.++++ |.+|++-..|++.|++.|-+ .|+
T Consensus 71 ~d~~Ivv~---C~~G~rS~~Aa~~L~~~G~~~~V~ 102 (122)
T cd01526 71 KDSPIYVV---CRRGNDSQTAVRKLKELGLERFVR 102 (122)
T ss_pred CCCCEEEE---CCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 99878998---499965999999999819986478
No 214
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=42.72 E-value=23 Score=16.18 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHEECCCCEEEEECCCCH
Q ss_conf 214777652000026772699515835
Q gi|254780409|r 103 PISAKLVANLITQAGADRVIMLDLHAG 129 (310)
Q Consensus 103 ~isak~~a~ll~~~G~d~vit~DlH~~ 129 (310)
.||..-+.++++.- ..+.+|+-++
T Consensus 6 ~Is~~e~~~~~~~~---~~~liDVR~~ 29 (104)
T PRK00162 6 CINVEQAHQKLQEG---EAVLVDIRDP 29 (104)
T ss_pred EECHHHHHHHHHCC---CEEEEECCCH
T ss_conf 74899999999789---9399989988
No 215
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=42.64 E-value=26 Score=15.83 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=44.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHH
Q ss_conf 8555188516656357899999970---9979998326767632100002454557428995213203366888989875
Q gi|254780409|r 157 DISNLMVVSPDVGGVVRARALAKRL---GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALY 233 (310)
Q Consensus 157 ~~~~~vVVaPD~G~~~ra~~~a~~L---~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk 233 (310)
.-+.+.+++-- ++..-|..++.+| |.+.... .+.. ............||+|+=..-.....+..+++.+|
T Consensus 131 ~A~~I~i~G~G-~S~~vA~~~~~kl~rig~~~~~~---~d~~---~~~~~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~Ak 203 (282)
T PRK11557 131 SARRIILTGIG-ASGLVAQNFAWKLMKIGINAVAE---RDMH---ALLATVQALSPDDLLLAISYSGERRELNLAADEAL 203 (282)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHHHHCCCEEEC---CCHH---HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 48958999704-36999999999999809963740---8868---99999981899998999859999789999999999
Q ss_pred HCCCCCEEEEEEC
Q ss_conf 2687521787205
Q gi|254780409|r 234 EQGALSVTAYITH 246 (310)
Q Consensus 234 ~~GA~~V~~~~TH 246 (310)
+.||+ .++.|.
T Consensus 204 ~~Ga~--iIaIT~ 214 (282)
T PRK11557 204 RVGGK--VLAITG 214 (282)
T ss_pred HCCCE--EEEECC
T ss_conf 87993--999729
No 216
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=42.47 E-value=26 Score=15.82 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=68.6
Q ss_pred HCCCCCEECCHHHHHHHHHHHH-CCCCCEEEEECCCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf 2588620001037777876530-58555188516656----357899999970997999832676763210000245455
Q gi|254780409|r 134 FFDIPTDNLYALPILERDIKER-NDISNLMVVSPDVG----GVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVE 208 (310)
Q Consensus 134 ~F~ip~~nl~~~~~l~~~l~~~-~~~~~~vVVaPD~G----~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~ 208 (310)
+|.+....-.-...+++|+.+. .+.+++.++.+|.. ..+-.+...+++|..+.++.......+.......+..++
T Consensus 113 ~Fr~~~~~~~~~~~~~~~~~~~~~~~k~vaii~~d~~~G~~~~~~~~~~~~~~g~~~~vv~~~~~~~~~~D~s~~l~~i~ 192 (346)
T cd06330 113 VFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALL 192 (346)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 15715986899999999999707898089999389567799999999999861789658888825899864699999999
Q ss_pred --CCEEEEECHHHCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf --74289952132033668889898752687-52178720555571689888636998999817
Q gi|254780409|r 209 --GKDCILIDDIVDTGGTLCGAADALYEQGA-LSVTAYITHGVLSSSSIERIEKSKMKELVITD 269 (310)
Q Consensus 209 --gr~vIIVDDii~TGgTi~~aa~~Lk~~GA-~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn 269 (310)
+-++|++ ...|+......+.++++|- ..+...... ..+ .....+.....+.++.+.
T Consensus 193 ~~~pd~v~~---~~~~~~~~~~~~q~~~~G~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~ 251 (346)
T cd06330 193 AAKPDAIFS---SLWGGDLVTFVRQANARGLFDGTTVVLTL-TGA-PELAPLGDEMPEGVIIGG 251 (346)
T ss_pred HCCCCEEEE---ECCCHHHHHHHHHHHHCCCCCCCEEEEEC-CCH-HHHHHHHHHHHCCEEEEE
T ss_conf 679999999---06645799999999974987797499965-756-999999887627679996
No 217
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=42.28 E-value=15 Score=17.33 Aligned_cols=153 Identities=21% Similarity=0.341 Sum_probs=90.0
Q ss_pred HHHHHEECCCCEEEEECCCCHHHHHHCCCCC-------EECCHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHH
Q ss_conf 6520000267726995158357765258862-------00010377778765305855-518851665635789999997
Q gi|254780409|r 109 VANLITQAGADRVIMLDLHAGQVQGFFDIPT-------DNLYALPILERDIKERNDIS-NLMVVSPDVGGVVRARALAKR 180 (310)
Q Consensus 109 ~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~-------~nl~~~~~l~~~l~~~~~~~-~~vVVaPD~G~~~ra~~~a~~ 180 (310)
=|+-|+..|+|.|+. ++||+-|+ ..+.+|-.++..+++..... .+=|.==|+=| |-.+|.-
T Consensus 35 da~aL~~GG~DAv~~--------eN~fd~PF~kq~v~~~tvAAMa~I~~~l~~~v~~PlGiNvLrNDa~a---a~~iA~~ 103 (261)
T TIGR00259 35 DAKALEEGGVDAVIL--------ENFFDAPFLKQEVDPETVAAMAVIAKELKEDVSIPLGINVLRNDAVA---ALAIAKA 103 (261)
T ss_pred HHHHHHHCCCCEEEE--------ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH---HHHHHHH
T ss_conf 999998569878998--------52468697765056344318899999887512046410121234777---8988676
Q ss_pred CCCCE--------------EEE---------ECCCCCCCCCEEECCC--------C---------C-CC--CCEEEEECH
Q ss_conf 09979--------------998---------3267676321000024--------5---------4-55--742899521
Q gi|254780409|r 181 LGCLL--------------AIV---------DKRREHPGKIEVMNII--------G---------K-VE--GKDCILIDD 217 (310)
Q Consensus 181 L~~~~--------------~~~---------~K~R~~~~~v~~~~~~--------g---------d-V~--gr~vIIVDD 217 (310)
-++.| .++ +|++-..|++.++..+ | | |+ =-|.||+--
T Consensus 104 v~A~FiRVn~L~G~~~sD~G~~eg~a~E~~ry~~~~~sG~v~~ladv~vkhA~~lG~~~l~~~~~~Tver~laDAvi~SG 183 (261)
T TIGR00259 104 VGAKFIRVNVLTGVAASDQGIIEGNAGELLRYKKLLGSGEVKILADVVVKHAVHLGNRDLESIVLDTVERGLADAVILSG 183 (261)
T ss_pred HCCCEEEEEEEEEEEECCCCCEECCHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 47726898533212553674000416543343312676645630315245210258836688986445416988389815
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 3203366888989875268752178720555571689888636998999817887843
Q gi|254780409|r 218 IVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPTD 275 (310)
Q Consensus 218 ii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~~ 275 (310)
.-..+.+=.+--+..|+. ++.+-+.+--|+=.+|..+.|.- .+-+|+..++-.+.
T Consensus 184 ~~tG~~~~~e~Lk~ak~~-~~~~pVl~gsG~~~~N~~~ll~~--AdG~ivat~~Kk~G 238 (261)
T TIGR00259 184 KTTGTEVDLEELKLAKET-VKDTPVLAGSGVNLENVEELLSI--ADGVIVATTIKKDG 238 (261)
T ss_pred CCCCCCCCHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHH--HCCEEEEEEEECCC
T ss_conf 457888788889999875-17966998478798899999987--39879835653388
No 218
>PRK08508 biotin synthase; Provisional
Probab=42.26 E-value=26 Score=15.79 Aligned_cols=183 Identities=13% Similarity=0.035 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCHHHCC--CC---------CCCCCCHH------HHHHHHHHEECCCCEEEEECCCC
Q ss_conf 999999999861720011310233011034--31---------12565214------77765200002677269951583
Q gi|254780409|r 66 ELLIMIDAVRRSSARRITGVIPYFGYCRQD--RK---------PSPRTPIS------AKLVANLITQAGADRVIMLDLHA 128 (310)
Q Consensus 66 eLl~~~~a~k~~~A~~it~ViPY~~YaRqD--r~---------~~~~e~is------ak~~a~ll~~~G~d~vit~DlH~ 128 (310)
|.+-.+..++..|+.|..+|.-.-++...+ +. ..++-.+. ..--++.|..+|+||. .|+
T Consensus 44 eIl~~A~~a~~~G~~rf~lv~sg~~~~~~~~e~v~~~v~~Ik~~~~~l~~c~slG~l~~e~~~~LkeAGvdrY----~hN 119 (279)
T PRK08508 44 QIVQEAKMARANGALGFCLVTAGRGLDDKKLEYVAKAAKAVKKEVPGLHLIACNGMASVEQLKELKKAGIFSY----NHN 119 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEE----CCC
T ss_conf 9999999999759976899982368875449999999999863379935761178579999999998397123----076
Q ss_pred HH-HHHHCC-CCCEECCHHHH-HHHHHHHHCCCC--CEEEEECCCCHHHHHHHHH--HHCCCC---EEEEECCCCCCCCC
Q ss_conf 57-765258-86200010377-778765305855--5188516656357899999--970997---99983267676321
Q gi|254780409|r 129 GQ-VQGFFD-IPTDNLYALPI-LERDIKERNDIS--NLMVVSPDVGGVVRARALA--KRLGCL---LAIVDKRREHPGKI 198 (310)
Q Consensus 129 ~~-~~~~F~-ip~~nl~~~~~-l~~~l~~~~~~~--~~vVVaPD~G~~~ra~~~a--~~L~~~---~~~~~K~R~~~~~v 198 (310)
-. -..||. +-..+-+-..+ -.+++++. +++ --.+++--+.-..|+.... +.|+.+ +.++...
T Consensus 120 lETs~~~y~~I~tThty~dRl~tl~~~k~a-Gl~vCsGgIiGlGEt~edrve~a~~L~eL~~dsVPIN~liPi------- 191 (279)
T PRK08508 120 LETSKEFFPKICTTHSWEERFQTCLNAKEA-GLGLCSGGIFGLGESWEDRISMLKSLASLSPHSTPINFFIPN------- 191 (279)
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHC-CCEEECCCEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCC-------
T ss_conf 676768757658998889999999999981-994867854478999899999999998389987515676589-------
Q ss_pred EEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 000024545574289952132033668889898752687-52178720555571689888636998999817887
Q gi|254780409|r 199 EVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGA-LSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQ 272 (310)
Q Consensus 199 ~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA-~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~ 272 (310)
+.+++ +. .-+ +...+.+....+|=.-. +.|.++.--....++....+..+|..-+++-|-+.
T Consensus 192 ~GTPL--e~---~~l-------~~~e~lr~iAl~RlilP~a~Ir~agGRe~~l~~~q~~~~~aGaN~i~~G~yLT 254 (279)
T PRK08508 192 PALPL--DT---PTL-------SADEALEIVRLAKEALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLT 254 (279)
T ss_pred CCCCC--CC---CCC-------CHHHHHHHHHHHHHHCCCCEEEECCCHHHHCHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99988--88---999-------99999999999999789876562465244556369999984684688866527
No 219
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=42.02 E-value=26 Score=15.77 Aligned_cols=89 Identities=15% Similarity=0.033 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHH
Q ss_conf 37777876530585551885166563578999999709979998326767632100002454557428995213203366
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGT 224 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgT 224 (310)
+..++++++........++.||-..+..-|+.+++.++....+.. ++ +..
T Consensus 34 a~~l~~~l~~~~~~~~~i~sSp~~R~~~Ta~~~~~~~~~~~~i~~--------------------------~~----~~r 83 (153)
T cd07040 34 ARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLFEGLPVEV--------------------------DP----RAR 83 (153)
T ss_pred HHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEE--------------------------CH----HHH
T ss_conf 999999999659998899917779999999999987599998797--------------------------47----888
Q ss_pred HHHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 88898987526--8752178720555571689888636998
Q gi|254780409|r 225 LCGAADALYEQ--GALSVTAYITHGVLSSSSIERIEKSKMK 263 (310)
Q Consensus 225 i~~aa~~Lk~~--GA~~V~~~~THgifs~~a~e~l~~s~i~ 263 (310)
+.++.+.+.+. ...+.++++|||-........+.....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~ilivsH~~~i~~~~~~l~~~~~~ 124 (153)
T cd07040 84 VLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDE 124 (153)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCHH
T ss_conf 99999999998644798399993649999999999692989
No 220
>PRK11761 cysM cysteine synthase B; Provisional
Probab=41.99 E-value=26 Score=15.77 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 56521477765200002677269951583577652588620001037777876530585551885166563578999999
Q gi|254780409|r 100 PRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAK 179 (310)
Q Consensus 100 ~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~ 179 (310)
+...++...+|.. .|..-++.++...+ +.-.+.++. +. .++ +..|..++...++.+|+
T Consensus 72 GN~g~alA~~a~~---~G~~~~iv~p~~~s----------------~~k~~~l~~-~G-AeV-i~~~~~~~~~~ar~~a~ 129 (296)
T PRK11761 72 GNTGIALAMAAAI---KGYRMKLIMPENMS----------------QERRAAMRA-YG-AEL-ILVPKEQGMEGARDLAL 129 (296)
T ss_pred CCHHHHHHHHHHH---CCCEEEEECCCCCC----------------HHHHHHHHH-CC-CCE-EEECCCCCHHHHHHHHH
T ss_conf 8679999999998---19747996786578----------------899999997-49-955-74177745689999999
Q ss_pred HCCC--CEEEEECCCCCCC-----CCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC-CEEEEE
Q ss_conf 7099--7999832676763-----210000245455742899521320336688898987526875-217872
Q gi|254780409|r 180 RLGC--LLAIVDKRREHPG-----KIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGAL-SVTAYI 244 (310)
Q Consensus 180 ~L~~--~~~~~~K~R~~~~-----~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~-~V~~~~ 244 (310)
++.. +..+++.-....+ .....++.-+..|+.-.+|- -+.||||+...++.||+.... +|+.+-
T Consensus 130 ~l~~~~~~~~~~Q~~N~~N~~ah~~ttg~EI~~q~~g~id~~V~-~vGtGGti~Gia~~lK~~~p~vkvvgve 201 (296)
T PRK11761 130 QMQAEGKGKVLDQFNNPDNPYAHYETTGPEIWRQTEGRITHFVS-SMGTTGTIMGVSRYLKEQNPAVQIVGLQ 201 (296)
T ss_pred HHHHCCCCEECCCCCCHHHHHHHCCCHHHHHHHHCCCCCEEEEE-ECCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99873497843677885667775467399999974898339998-4277088999999999758999899981
No 221
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=41.17 E-value=27 Score=15.69 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=24.5
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 5742899521320336688898987526875217872
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
+++.++++ |.+|..-..|++.|++.|=+.|+-+.
T Consensus 63 ~d~~ivv~---C~sG~RS~~Aa~~L~~~Gf~nV~ni~ 96 (117)
T cd01522 63 KDRPVLLL---CRSGNRSIAAAEAAAQAGFTNVYNVL 96 (117)
T ss_pred CCCEEEEE---CCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99869998---89981599999999985987779818
No 222
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=41.03 E-value=27 Score=15.67 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred HHHHHHHHEECCCCEEEEECCCCHHHHHHCCCC--CEECC----HHHHHHHHHHHHCCCCCEEEEECCCC---HHHHHHH
Q ss_conf 777652000026772699515835776525886--20001----03777787653058555188516656---3578999
Q gi|254780409|r 106 AKLVANLITQAGADRVIMLDLHAGQVQGFFDIP--TDNLY----ALPILERDIKERNDISNLMVVSPDVG---GVVRARA 176 (310)
Q Consensus 106 ak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip--~~nl~----~~~~l~~~l~~~~~~~~~vVVaPD~G---~~~ra~~ 176 (310)
.+.+-+||+.+|++-..++. ....+....+.| --|+. ....+++|+.++++.. .+-+.| -| -..|-+.
T Consensus 177 ~~eikrll~~~Gi~v~~~~~-~~~~~~~i~~~~~A~lniv~~~~~~~~~a~~Lee~fgiP-~~~~~~-~Gi~~T~~~Lr~ 253 (415)
T cd01977 177 TEVLQKYFERMGIQVLSTFT-GNGTYDDLRWMHRAKLNVVNCARSAGYIANELKKRYGIP-RLDVDG-FGFEYCAESLRK 253 (415)
T ss_pred HHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCC-EEEECC-CCHHHHHHHHHH
T ss_conf 89999999975995799717-998768775336112658987999999999999976997-184056-774679999999
Q ss_pred HHHHCCCCEE---EEECCCCCCCCCEEECCCCCCCCCEEEEE-CHHHCCHHHHHHHHHHH-HHCCCCCEEEEEECCCCCH
Q ss_conf 9997099799---98326767632100002454557428995-21320336688898987-5268752178720555571
Q gi|254780409|r 177 LAKRLGCLLA---IVDKRREHPGKIEVMNIIGKVEGKDCILI-DDIVDTGGTLCGAADAL-YEQGALSVTAYITHGVLSS 251 (310)
Q Consensus 177 ~a~~L~~~~~---~~~K~R~~~~~v~~~~~~gdV~gr~vIIV-DDii~TGgTi~~aa~~L-k~~GA~~V~~~~THgifs~ 251 (310)
+++.+|.+-. ++.+++..-. ......--..+||.|.|+ ||- + ....++.+ .|.|.. |.++.|..-. .
T Consensus 254 ia~~~g~~~~~e~~i~~e~~~~~-~~l~~~~~~l~GKkv~i~~g~~-~----~~~~~~~~~~ElGme-vv~~~~~~~~-~ 325 (415)
T cd01977 254 IGAFFGIEDRAEAVIAEEMAKWK-PELDWYKERLKGKKVCIWTGGP-K----LWHWTKVIEDELGMQ-VVAMSSKFGH-Q 325 (415)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCEEEEECCCH-H----HHHHHHHHHHHCCCE-EEEECCCCCC-H
T ss_conf 99982994117788999999999-9999998757399899975855-8----999999999866858-9996054588-7
Q ss_pred HHHHHHH-HCCCCEEEECCC
Q ss_conf 6898886-369989998178
Q gi|254780409|r 252 SSIERIE-KSKMKELVITDS 270 (310)
Q Consensus 252 ~a~e~l~-~s~i~~iv~TnT 270 (310)
+.++++. ...-..+++.|.
T Consensus 326 ~~~e~~~~~~~~~~~~v~~~ 345 (415)
T cd01977 326 EDFEKVIARGGEGTIYIDDP 345 (415)
T ss_pred HHHHHHHHHCCCCEEEEECC
T ss_conf 89999997478880998689
No 223
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=40.95 E-value=27 Score=15.66 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=18.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 75217872055557168988863699899981788
Q gi|254780409|r 237 ALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 237 A~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
.+.|+++|-.|.=|+.|.+.|.+.|+++++--..+
T Consensus 60 ~~~IvvyC~sG~RS~~A~~~L~~~Gy~nV~N~gGi 94 (104)
T PRK10287 60 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGL 94 (104)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCCCEEECCCH
T ss_conf 99389986998389999999997699737857488
No 224
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=40.83 E-value=28 Score=15.65 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=69.7
Q ss_pred HHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHH---HHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC-
Q ss_conf 52588620001037777876530585551885166563-5789---999997099799983267676321000024545-
Q gi|254780409|r 133 GFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGG-VVRA---RALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV- 207 (310)
Q Consensus 133 ~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~-~~ra---~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV- 207 (310)
.+|......-.....+++|+++. +++++.++.+|... ...+ +...+.+|..+..... ...+.......+..+
T Consensus 112 ~~fr~~~~~~~~~~~~~~~~~~~-~~~~vaiv~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~--~~~~~~d~~~~i~~i~ 188 (299)
T cd04509 112 YLFRTGPSDEQQAEALADYIKEY-NWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEY--YPLGTTDFTSLLQKLK 188 (299)
T ss_pred CEEEECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEC--CCCCCCCHHHHHHHHH
T ss_conf 46984388799999999999980-89779995577406799999999999987997999984--6999989999999999
Q ss_pred -CCCEEEEECHHHCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf -5742899521320336688898987526875-217872055557168988863699899981
Q gi|254780409|r 208 -EGKDCILIDDIVDTGGTLCGAADALYEQGAL-SVTAYITHGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 208 -~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~-~V~~~~THgifs~~a~e~l~~s~i~~iv~T 268 (310)
.+-++|++ ...+.......+.+++.|-. +...+.+.+.++..-.+...+. .+.++++
T Consensus 189 ~~~~d~v~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~-~~G~~~~ 247 (299)
T cd04509 189 AAKPDVIVL---CGSGEDAATILKQAAEAGLTGGYPILGITLGLSDVLLEAGGEA-AEGVLTG 247 (299)
T ss_pred HCCCCEEEE---CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH-HCCEEEE
T ss_conf 669999999---0771899999999997599889739995676788999978887-2876999
No 225
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=40.46 E-value=28 Score=15.61 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=81.3
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHH---H--------
Q ss_conf 98997689999999999995891044489986997078885678689708998597888046799999---9--------
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELL---I-------- 69 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl---~-------- 69 (310)
|||+.-.+- +++++.-..+| ++++||+.++. .+.+++.|+++|-|.. .+|..+++-- +
T Consensus 1 MkI~~Deni-p~~~~~f~~~g------~v~~~~gr~i~---~~~l~daD~LiVRS~T-~V~~~LL~~s~lKfIgtat~G~ 69 (379)
T PRK00257 1 MKIVADENI-PLLDEFFAGFG------EIRRLPGRDFD---RAAVRDADALLVRSVT-RVDRALLEGSKVRFVGTCTIGT 69 (379)
T ss_pred CEEEEECCC-CCHHHHHHCCC------EEEECCCCCCC---HHHHCCCCEEEEECCC-CCCHHHHCCCCCEEEEECCCCC
T ss_conf 939984787-20798851068------08976899799---8890778899995687-4489997569926999745635
Q ss_pred ---HHHHHHHCCCC-------HHHHHCCC-----CCHHHCCCCCCC-------CCCHHHHHHHHHHEECCCCEEEEECCC
Q ss_conf ---99999861720-------01131023-----301103431125-------652147776520000267726995158
Q gi|254780409|r 70 ---MIDAVRRSSAR-------RITGVIPY-----FGYCRQDRKPSP-------RTPISAKLVANLITQAGADRVIMLDLH 127 (310)
Q Consensus 70 ---~~~a~k~~~A~-------~it~ViPY-----~~YaRqDr~~~~-------~e~isak~~a~ll~~~G~d~vit~DlH 127 (310)
=+++|++.|-. .-..|.=| +.-+|+.-.... |-.-..+.+|+.++..|.+ |+..|+.
T Consensus 70 DhID~~~l~~~gI~v~naPG~Na~sVaEyvl~~ll~la~~~g~~l~gktvGIIG~G~IG~~va~~l~afG~~-vl~~DP~ 148 (379)
T PRK00257 70 DHLDLDYFAEAGITWSNAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGIVGVGHVGGRLVRVLRGLGWK-VLVCDPP 148 (379)
T ss_pred CCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCH
T ss_conf 314699998699789969987779999999999999998508665198799977167999999999977998-9997845
Q ss_pred CHHHHHH--C-C--------------CCCEE--CC-HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 3577652--5-8--------------86200--01-037777876530585551885166563578999999709
Q gi|254780409|r 128 AGQVQGF--F-D--------------IPTDN--LY-ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLG 182 (310)
Q Consensus 128 ~~~~~~~--F-~--------------ip~~n--l~-~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~ 182 (310)
.....+. | + +|... -+ ...++.+...+... .+.++|-.--|++---..+.+.|.
T Consensus 149 ~~~~~~~~~~~sleell~~sDiIslHvPLt~~g~~~T~~Li~~~~L~~mk-~~aiLINtsRG~VVDe~ALl~aL~ 222 (379)
T PRK00257 149 RQEAEGDGDFVSLERILEECDIISLHTPLTKEGEHPTWHLLDEAFLASLR-PGAWLINASRGAVVDNQALREALL 222 (379)
T ss_pred HHHHHCCCCEECHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEECCCCHHCCHHHHHHHHH
T ss_conf 76643386033499998749999992577778875320471999996079-980999889730019999999998
No 226
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=40.42 E-value=28 Score=15.61 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHHHHEECCCCEEEEECCCCHHHHHHC--CC-CCEECCH-HHHHHHHHHHHCCCC----CEEEEE-CCCCH-HHHH
Q ss_conf 4777652000026772699515835776525--88-6200010-377778765305855----518851-66563-5789
Q gi|254780409|r 105 SAKLVANLITQAGADRVIMLDLHAGQVQGFF--DI-PTDNLYA-LPILERDIKERNDIS----NLMVVS-PDVGG-VVRA 174 (310)
Q Consensus 105 sak~~a~ll~~~G~d~vit~DlH~~~~~~~F--~i-p~~nl~~-~~~l~~~l~~~~~~~----~~vVVa-PD~G~-~~ra 174 (310)
-....|.-|+.||.||| =|-||+..-+.|= .+ +.+.+.. ..=+-+++.. ++. |.||.. ++.+- ++.-
T Consensus 102 LL~~~A~~Lk~AGLdRV-NVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~--GL~PVKlN~Vvl~G~N~~~~~~~m 178 (324)
T TIGR02668 102 LLEKLAKKLKEAGLDRV-NVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDA--GLTPVKLNMVVLKGINDNEEIPDM 178 (324)
T ss_pred HHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEEEECCCCCCCCHHHH
T ss_conf 48989999998285613-120267886788864489986078999999999972--898137888875477885007999
Q ss_pred HHHHH--HCCCCEEEEE
Q ss_conf 99999--7099799983
Q gi|254780409|r 175 RALAK--RLGCLLAIVD 189 (310)
Q Consensus 175 ~~~a~--~L~~~~~~~~ 189 (310)
-.|+. ..|..+=+++
T Consensus 179 ~~f~~~~~~g~~LQlIE 195 (324)
T TIGR02668 179 VEFAADYEGGAILQLIE 195 (324)
T ss_pred HHHHHHHHCCCEEEEEE
T ss_conf 99998751593689861
No 227
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.27 E-value=26 Score=15.78 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=57.5
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC------EEEC-----CCCCCCCCEEEEECHHHCCHHHHHHH-H
Q ss_conf 8851665635789999997099799983267676321------0000-----24545574289952132033668889-8
Q gi|254780409|r 162 MVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKI------EVMN-----IIGKVEGKDCILIDDIVDTGGTLCGA-A 229 (310)
Q Consensus 162 vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v------~~~~-----~~gdV~gr~vIIVDDii~TGgTi~~a-a 229 (310)
.+++|.+..+.|+-.....|++.+-. ++.|-+ ++.. ..+..+++-.|+.|.|-..-++|+++ +
T Consensus 194 ~lm~p~~~~v~~~l~~~~~l~i~~Ia-----P~HG~i~~~~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aia 268 (388)
T COG0426 194 NLMAPNARLVLWALKKIKLLKIEMIA-----PSHGPIWRGNPKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIA 268 (388)
T ss_pred HHHCCCHHHHHHHHHHCCCCCCCEEE-----CCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 96052179999998540546741897-----5998525579899999999997068766179998422378799999998
Q ss_pred HHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCE-EEECCCCC
Q ss_conf 98752687521787205555716898886369989-99817887
Q gi|254780409|r 230 DALYEQGALSVTAYITHGVLSSSSIERIEKSKMKE-LVITDSIQ 272 (310)
Q Consensus 230 ~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~-iv~TnTi~ 272 (310)
+-|++.|.+-+...++-. =.+.-.+.+.++ +- ++.+-|+.
T Consensus 269 egl~~~gv~v~~~~~~~~-~~~eI~~~i~~a--~~~vvGsPT~~ 309 (388)
T COG0426 269 EGLMKEGVDVEVINLEDA-DPSEIVEEILDA--KGLVVGSPTIN 309 (388)
T ss_pred HHHHHCCCCEEEEECCCC-CHHHHHHHHHHC--CEEEEECCCCC
T ss_conf 776115996299991558-899999998753--77999568646
No 228
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=40.21 E-value=28 Score=15.59 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=29.7
Q ss_pred CCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 245455742899521320336688898987526875217872
Q gi|254780409|r 203 IIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 203 ~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
..|+++|+.++|| -+|.+-..+++.|+++|+++|+++-
T Consensus 172 ~~~~l~~~~vLvi----GaGem~~l~~~~L~~~g~~~i~v~n 209 (311)
T cd05213 172 IFGNLKGKKVLVI----GAGEMGELAAKHLAAKGVAEITIAN 209 (311)
T ss_pred HHCCCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7187211679998----6879999999999965998259976
No 229
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=39.59 E-value=29 Score=15.53 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=49.8
Q ss_pred CCCCEEEEE-ECCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 699707888-56786-8970899859788804679999999999986172001131023301103431125652147776
Q gi|254780409|r 32 FSDREVFVE-IGENV-RGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLV 109 (310)
Q Consensus 32 F~dGE~~v~-i~~~v-rg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~ 109 (310)
++|-|.-++ |.+.+ +++.+.|... .++ |-+.-.-+|...++..|+..+.-.+|- | +..|=.++.+.+
T Consensus 51 l~dm~~Av~ri~~Ai~~~ekI~I~GD--YDv-DGiTstaiL~~~l~~~g~~~v~y~IP~-------R-~~eGYGl~~~~i 119 (574)
T PRK11070 51 LSGIEKAVEILYNAFREGTRIIVVGD--FDA-DGATSTALSVLALRSLGCSNIDYLVPN-------R-FEDGYGLSPEVV 119 (574)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEC--CCC-HHHHHHHHHHHHHHHCCCCCEEEECCC-------C-CCCCCCCCHHHH
T ss_conf 13999999999999987994999934--786-067999999999998699716997989-------8-767879799999
Q ss_pred HHHHEECCCCEEEEECCCCH
Q ss_conf 52000026772699515835
Q gi|254780409|r 110 ANLITQAGADRVIMLDLHAG 129 (310)
Q Consensus 110 a~ll~~~G~d~vit~DlH~~ 129 (310)
-++.+. |++-|||+|.-..
T Consensus 120 ~~~~~~-g~~LiITvDcGi~ 138 (574)
T PRK11070 120 DQAHAR-GAQLIVTVDNGIS 138 (574)
T ss_pred HHHHHC-CCCEEEEECCCHH
T ss_conf 999965-9999999578530
No 230
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=39.39 E-value=29 Score=15.51 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=8.2
Q ss_pred CCCEEEEECCCCHHH
Q ss_conf 677269951583577
Q gi|254780409|r 117 GADRVIMLDLHAGQV 131 (310)
Q Consensus 117 G~d~vit~DlH~~~~ 131 (310)
.++.|+.-..|..-+
T Consensus 41 ~i~~vv~TH~H~DH~ 55 (183)
T smart00849 41 DIDAIILTHGHPDHI 55 (183)
T ss_pred CCCEEEECCCCCCHH
T ss_conf 874999899994003
No 231
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=39.18 E-value=29 Score=15.49 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=31.7
Q ss_pred CC-EEEEECCCCC-----CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHC
Q ss_conf 97-0899859788-----804679999999999986172001131023301103
Q gi|254780409|r 47 GE-DVFIVQSTSC-----PANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQ 94 (310)
Q Consensus 47 g~-dV~ivqs~~~-----~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRq 94 (310)
+. ||+|+-||+. +..+.-.+ +++.++++-.+.-++++|.|+..|-
T Consensus 179 ~~~DvLI~EsTYg~~~~~~r~~~e~~---f~~~v~~~l~~GG~vlipafa~gra 229 (427)
T COG1236 179 PCIDVLIVESTYGDRLHPNRDEVERR---FIESVKAALERGGTVLIPAFALGRA 229 (427)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHH---HHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 88878998065588778887899999---9999999875798499940567089
No 232
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=39.10 E-value=29 Score=15.48 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=36.4
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 320336688898987526875217872055557168988863699899981788
Q gi|254780409|r 218 IVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 218 ii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
+|-.|||--.|.=.|.+.|.++||++.= +.+=.++|-+....+-+.+-+.
T Consensus 135 viGaGGtsrAA~yaL~sLG~~~I~~inR----~~dKl~~L~~~~~~~~~i~~~e 184 (291)
T TIGR01809 135 VIGAGGTSRAAVYALASLGVKDIYVINR----SKDKLKKLVDLLVSEFVIIRLE 184 (291)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8838721489999998669970699735----8667668877413561356651
No 233
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=38.71 E-value=30 Score=15.44 Aligned_cols=160 Identities=18% Similarity=0.086 Sum_probs=90.0
Q ss_pred CCCCCEECCHHHHHHHHHHHHC----CCCCEEEEECCCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCC
Q ss_conf 5886200010377778765305----8555188516656----3578999999709979998326767632100002454
Q gi|254780409|r 135 FDIPTDNLYALPILERDIKERN----DISNLMVVSPDVG----GVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGK 206 (310)
Q Consensus 135 F~ip~~nl~~~~~l~~~l~~~~----~~~~~vVVaPD~G----~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gd 206 (310)
|..+...-.....+.+|+.++. ...++.++..|.. ..+-.+..++++|..+..... ...+.......+..
T Consensus 113 F~~~~~~~~~~~~~~~~l~~~~~~~~~~kkva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~--~~~~~~Dft~~l~~ 190 (351)
T cd06334 113 FPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPV--PPPGPNDQKAQWLQ 190 (351)
T ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEE--CCCCCCCHHHHHHH
T ss_conf 7626987899999999999841302488789999568627689999999999976997988880--69998358999999
Q ss_pred C--CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE-CCCCCCC--HH----H
Q ss_conf 5--574289952132033668889898752687521787205555716898886369989998-1788784--34----7
Q gi|254780409|r 207 V--EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVI-TDSIQPT--DL----V 277 (310)
Q Consensus 207 V--~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~-TnTi~~~--~~----~ 277 (310)
+ .+-++|++ ..+|......++.+++.|-+ +-.+.+|+..+..-++..-+. .+.++. +...+.. +. .
T Consensus 191 i~~a~pD~V~~---~~~~~~~~~~~kqa~~~G~~-~~~ig~~~~~~~~~~~~aG~a-a~G~~~~~~~~~~~d~p~~~~~~ 265 (351)
T cd06334 191 IRRSGPDYVIL---WGWGVMNPVAIKEAKRVGLD-DKFIGNWWSGDEEDVKPAGDA-AKGYKGVTPFAGGADDPVGKEIV 265 (351)
T ss_pred HHHCCCCEEEE---ECCCHHHHHHHHHHHHCCCC-CCEEEEECCCCHHHHHHHHHH-CCCEEEECCCCCCCCCCHHHHHH
T ss_conf 99769899999---37737899999999975999-857975167889999972111-17738952566777773158999
Q ss_pred H-----CCCCE------E-----EEECHHHHHHHHHHHHC
Q ss_conf 4-----07985------9-----98117999999998718
Q gi|254780409|r 278 K-----SSAKI------R-----ILTIAQLMGEAINRTFE 301 (310)
Q Consensus 278 ~-----~~~ki------~-----visva~llA~aI~~i~~ 301 (310)
+ ...+. . =.+.+.+++++|+|--.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~G~~~a~~~~eal~~A~~ 305 (351)
T cd06334 266 KEVYDKGKGSGNDKEIGSVYYNRGVVNAMIMVEAIRRAQE 305 (351)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999962677766666751599999999999999999886
No 234
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=38.68 E-value=30 Score=15.43 Aligned_cols=37 Identities=14% Similarity=-0.069 Sum_probs=22.7
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 4557428995213203366888989875268752178
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~ 242 (310)
-.+++.+|+.+.=-..-..+.+..+.+++.||+=+.+
T Consensus 133 lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~ 169 (279)
T COG0287 133 LFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEM 169 (279)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 3379679994799987899999999999749889986
No 235
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=38.43 E-value=30 Score=15.41 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=48.0
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCC--CCCCCHHHHHHHHHHE
Q ss_conf 78885678689708998597888046799999999999861720011310233011034311--2565214777652000
Q gi|254780409|r 37 VFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKP--SPRTPISAKLVANLIT 114 (310)
Q Consensus 37 ~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~--~~~e~isak~~a~ll~ 114 (310)
+++...+.=.|.-|++++....+.. .+-..+.-+..+-..+-+-|..=+|-+ .+.|+.. .......++.+..++.
T Consensus 20 ~ri~Y~~~G~G~pvvllHG~~~~~~-~W~~~~~~l~~~~~~~yrVIa~Dl~G~--G~S~~~~~~~~~~~~~a~~~~~lld 96 (282)
T TIGR03343 20 FRIHYNEAGNGEAVIMLHGGGPGAG-GWSNYYRNIGPFVDAGYRVILKDSPGF--NKSDAVVMDEQRGLVNARAVKGLMD 96 (282)
T ss_pred EEEEEEEECCCCEEEEECCCCCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8999999746881898839998742-789999977999978985999718998--8899876555324799999999999
Q ss_pred ECCCCEEEEECCCC
Q ss_conf 02677269951583
Q gi|254780409|r 115 QAGADRVIMLDLHA 128 (310)
Q Consensus 115 ~~G~d~vit~DlH~ 128 (310)
..|.+++..+= ||
T Consensus 97 ~L~i~~~~lvG-~S 109 (282)
T TIGR03343 97 ALDIEKAHLVG-NS 109 (282)
T ss_pred HCCCCCEEEEE-EC
T ss_conf 74998379997-37
No 236
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=38.27 E-value=30 Score=15.39 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=28.4
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 55742899521320336688898987526875217872055
Q gi|254780409|r 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHG 247 (310)
Q Consensus 207 V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THg 247 (310)
+.||.+.|+-| +......++.|.+.|..-+.++++.+
T Consensus 298 l~gkrvai~gd----~d~~~~l~~fL~ElG~~~~~~~~~~~ 334 (417)
T cd01966 298 LGGKRVAIALE----PDLLAALSSFLAEMGAEIVAAVATTD 334 (417)
T ss_pred HCCCEEEEECC----CHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 56977999877----16999999999978998889997899
No 237
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=38.09 E-value=30 Score=15.38 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=45.9
Q ss_pred CCEEEEECHHHCCH-HHHHHHHHHHHHCCCCC-EEEEEECCCCCHHHH-------HHHHHCCCCEEEECCCCCCCHHHHC
Q ss_conf 74289952132033-66888989875268752-178720555571689-------8886369989998178878434740
Q gi|254780409|r 209 GKDCILIDDIVDTG-GTLCGAADALYEQGALS-VTAYITHGVLSSSSI-------ERIEKSKMKELVITDSIQPTDLVKS 279 (310)
Q Consensus 209 gr~vIIVDDii~TG-gTi~~aa~~Lk~~GA~~-V~~~~THgifs~~a~-------e~l~~s~i~~iv~TnTi~~~~~~~~ 279 (310)
.....|+||-...+ .+|..+.+.|...-..+ |.+...-+-+...+. +.+...+++.++..-. .-....+.
T Consensus 325 ~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~-~~~~i~~~ 403 (451)
T COG0770 325 ANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGE-LSKAIAEA 403 (451)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECC-CHHHHHHH
T ss_conf 89818997378899899999999996376688579947766638548999999999998569509999762-06999986
Q ss_pred CCC-EEEEECHHHHHHHHHHHHCCCC
Q ss_conf 798-5998117999999998718887
Q gi|254780409|r 280 SAK-IRILTIAQLMGEAINRTFEERS 304 (310)
Q Consensus 280 ~~k-i~visva~llA~aI~~i~~~~S 304 (310)
.+. .....-.+-+.+.+...-+.+.
T Consensus 404 ~~~~~~~f~~~~~l~~~l~~~l~~gd 429 (451)
T COG0770 404 LGNKGIYFADKEELITSLKALLRKGD 429 (451)
T ss_pred CCCCEEECCCHHHHHHHHHHHCCCCC
T ss_conf 57775860777999999998567787
No 238
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=37.95 E-value=30 Score=15.36 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=28.6
Q ss_pred CCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 245455742899521320336688898987526875217872
Q gi|254780409|r 203 IIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 203 ~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
..|+++||.|+|| -+|.+-..+++.|.+.|++.|+++-
T Consensus 175 ~~~~l~~~~vlvv----GaGem~~l~~k~L~~~g~~~i~v~n 212 (414)
T PRK13940 175 QLDNISSKNVLII----GAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred HCCCCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6287122838996----6864789999999976998799945
No 239
>pfam00721 TMV_coat Virus coat protein (TMV like). This family contains coat proteins from tobamoviruses, hordeiviruses, Tobraviruses, Furoviruses and Potyviruses.
Probab=37.82 E-value=31 Score=15.35 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999999999589104448998699707888567868970899859788804679999999999986172
Q gi|254780409|r 7 NSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSA 79 (310)
Q Consensus 7 ~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A 79 (310)
.+++.--...-..||.....-..+|||++. |.+....+.....|-.|+-..|+.+|.+.
T Consensus 38 q~~r~~v~~~ls~lg~~~~~s~~~RFp~~~--------------~~v~l~~~~~~~~l~~l~~a~dt~nr~~e 96 (146)
T pfam00721 38 QAGRDTVRDQLSDLGLDSPVSRTKRFPAGG--------------FYVYLNDPRLAPLLTALLAALDTKNRIIE 96 (146)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEECCCCC--------------EEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 514899999997168667886404779984--------------69994585078999999986423540576
No 240
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=37.59 E-value=31 Score=15.32 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHH
Q ss_conf 8555188516656357899999970---9979998326767632100002454557428995213203366888989875
Q gi|254780409|r 157 DISNLMVVSPDVGGVVRARALAKRL---GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALY 233 (310)
Q Consensus 157 ~~~~~vVVaPD~G~~~ra~~~a~~L---~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk 233 (310)
+-+.+.+++ =-.+..-|..++.+| |.+...+. +..... .........|++|+=..--.-..+..+++..|
T Consensus 129 ~A~rI~~~G-~g~S~~vA~~~~~~l~~ig~~~~~~~---d~~~~~---~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak 201 (281)
T COG1737 129 KARRIYFFG-LGSSGLVASDLAYKLMRIGLNVVALS---DTHGQL---MQLALLTPGDVVIAISFSGYTREIVEAAELAK 201 (281)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHHHCCCCEEEEC---CCHHHH---HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 069579996-48359999999999998199669966---841799---99983899988999848999689999999999
Q ss_pred HCCCCCEEEEEECCCCCH
Q ss_conf 268752178720555571
Q gi|254780409|r 234 EQGALSVTAYITHGVLSS 251 (310)
Q Consensus 234 ~~GA~~V~~~~THgifs~ 251 (310)
+.||+-| +.|+...|+
T Consensus 202 ~~ga~vI--aiT~~~~sp 217 (281)
T COG1737 202 ERGAKVI--AITDSADSP 217 (281)
T ss_pred HCCCEEE--EEECCCCCC
T ss_conf 7799299--983999993
No 241
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=37.55 E-value=11 Score=18.32 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=14.4
Q ss_pred EEEEECCCCHHHHHHHHHHHCC
Q ss_conf 1885166563578999999709
Q gi|254780409|r 161 LMVVSPDVGGVVRARALAKRLG 182 (310)
Q Consensus 161 ~vVVaPD~G~~~ra~~~a~~L~ 182 (310)
.-+--|-.|+...|+.+++.|.
T Consensus 70 Y~~~YpapG~pelA~~i~~~L~ 91 (253)
T cd07363 70 YEIQYPAPGSPELAERVAELLK 91 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 2760789799999999999998
No 242
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=37.45 E-value=31 Score=15.31 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=23.5
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 57428995213203366888989875268752178
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~ 242 (310)
+++.+|+ .|.+|..-..|++.|++.|-..||.
T Consensus 53 ~~~~vv~---~C~~G~RS~~aa~~L~~~g~~~v~~ 84 (99)
T cd01527 53 GANAIIF---HCRSGMRTQQNAERLAAISAGEAYV 84 (99)
T ss_pred CCCEEEE---ECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 8986999---8799736999999999859988899
No 243
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=37.43 E-value=31 Score=15.31 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCC---CHHHHH---HHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 689708998597888---046799---9999999998617200113102330
Q gi|254780409|r 45 VRGEDVFIVQSTSCP---ANDYLM---ELLIMIDAVRRSSARRITGVIPYFG 90 (310)
Q Consensus 45 vrg~dV~ivqs~~~~---~nd~lm---eLl~~~~a~k~~~A~~it~ViPY~~ 90 (310)
++..--|==||.+.. ....+| |.+-.+.++++.||.+...+.-...
T Consensus 61 c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~ 112 (335)
T COG0502 61 CPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG 112 (335)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 8988987600104767982331289999999999999749950799873167
No 244
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=37.42 E-value=28 Score=15.62 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCHHHCCC-----CC-CC-----CCCH--HHHHHHHHHEECCCCEEEEECCCCHHHH
Q ss_conf 9999999998617200113102330110343-----11-25-----6521--4777652000026772699515835776
Q gi|254780409|r 66 ELLIMIDAVRRSSARRITGVIPYFGYCRQDR-----KP-SP-----RTPI--SAKLVANLITQAGADRVIMLDLHAGQVQ 132 (310)
Q Consensus 66 eLl~~~~a~k~~~A~~it~ViPY~~YaRqDr-----~~-~~-----~e~i--sak~~a~ll~~~G~d~vit~DlH~~~~~ 132 (310)
..--|..|++-.|.+. =||+|.=.-. .. .| ..++ .+.-++.+|....-+-|+|.|.+-.
T Consensus 62 R~~El~~A~~~LGv~~-----~~Lgy~DSGm~~~~~~~~~p~~~f~~~~~~eaa~~L~~~ir~~rP~Vvvtyd~~Gg--- 133 (283)
T TIGR03446 62 RREEMAEAAEILGVEH-----RWLGFVDSGLPEGDPLPPLPEGCFALEPLEEAAEPLVRVIREFRPHVITTYDENGG--- 133 (283)
T ss_pred HHHHHHHHHHHHCCCC-----EECCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC---
T ss_conf 9999999998628841-----45342477786789999998204440998999999999999868998994389988---
Q ss_pred HHCCCCCEECCHHHHHHHHH
Q ss_conf 52588620001037777876
Q gi|254780409|r 133 GFFDIPTDNLYALPILERDI 152 (310)
Q Consensus 133 ~~F~ip~~nl~~~~~l~~~l 152 (310)
|. -.||+.+...-...+
T Consensus 134 --Yg-HPDHi~~H~vt~~A~ 150 (283)
T TIGR03446 134 --YP-HPDHIMCHEVSVEAF 150 (283)
T ss_pred --CC-CCHHHHHHHHHHHHH
T ss_conf --99-905999999999999
No 245
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=37.01 E-value=31 Score=15.27 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--CCCEEEEECHH
Q ss_conf 377778765305855518851665----635789999997099799983267676321000024545--57428995213
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDV----GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV--EGKDCILIDDI 218 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~----G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~gr~vIIVDDi 218 (310)
...+++|+.+. +.+++.++..|. +..+..+...+++|..+........ +.......+..+ .+-++|++
T Consensus 124 ~~~~~~~~~~~-g~kkvavl~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~--~~~Dfs~~l~~i~~~~pD~v~~--- 197 (336)
T cd06326 124 IAAIVRHLVTL-GLKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYER--NTADVAAAVAQLAAARPQAVIM--- 197 (336)
T ss_pred HHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC--CCCCHHHHHHHHHHCCCCEEEE---
T ss_conf 99999999970-99759999358758899999999999977993799998689--9877799999998479799999---
Q ss_pred HCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC-----HH--------HHCCCC--E
Q ss_conf 20336688898987526875217872055557168988863699899981788784-----34--------740798--5
Q gi|254780409|r 219 VDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPT-----DL--------VKSSAK--I 283 (310)
Q Consensus 219 i~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~-----~~--------~~~~~k--i 283 (310)
...+.......+.+++.|-+.. .+...+..+....+ ......+.++.+...|.. +. .+..++ .
T Consensus 198 ~~~~~~~~~~~~q~~~~G~~~~-~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~p~~~~~~~p~~~~f~~~~~~~~~~~~~ 275 (336)
T cd06326 198 VGAYKAAAAFIRALRKAGGGAQ-FYNLSFVGADALAR-LLGEYARGVIVTQVVPNPWSRTLPIVREYQAAMKAYGPGAPP 275 (336)
T ss_pred ECCCHHHHHHHHHHHHCCCCCE-EEEECCCCHHHHHH-HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 2782799999999997699975-99856777399999-767751857999850696567989999999999985799999
Q ss_pred E-----EEECHHHHHHHHHHHH
Q ss_conf 9-----9811799999999871
Q gi|254780409|r 284 R-----ILTIAQLMGEAINRTF 300 (310)
Q Consensus 284 ~-----visva~llA~aI~~i~ 300 (310)
. -.+.+.++++||++.-
T Consensus 276 ~~~~~~gY~a~~~~~~Ai~~AG 297 (336)
T cd06326 276 SYVSLEGYIAAKVLVEALRRAG 297 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7789999999999999999828
No 246
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=36.72 E-value=32 Score=15.24 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=56.5
Q ss_pred HHHCCCCCEEC--CHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC-CCCEEEEECCCCCCCCCEEECCCCCCC
Q ss_conf 65258862000--103777787653058555188516656357899999970-997999832676763210000245455
Q gi|254780409|r 132 QGFFDIPTDNL--YALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL-GCLLAIVDKRREHPGKIEVMNIIGKVE 208 (310)
Q Consensus 132 ~~~F~ip~~nl--~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L-~~~~~~~~K~R~~~~~v~~~~~~gdV~ 208 (310)
+|-.+.|.... .-+..+++++++....-+.++.||=.-+..-|+.+++.+ +.++.....=+.
T Consensus 19 ~g~~D~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~~Spl~Ra~qTa~~i~~~~~~~~~~~~~~L~E--------------- 83 (153)
T cd07067 19 QGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVDPRLRE--------------- 83 (153)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCC---------------
T ss_conf 58899986988999999999887740787898994753999999999998668998068888780---------------
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 7428995213203366888989875268752178720555571689888636998
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMK 263 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~ 263 (310)
.-+....+.+.+.-..+-.+++|||-+..-.+..+...+.+
T Consensus 84 --------------~R~~~~l~~l~~~~~~~~ilvVsHg~~ir~l~~~ll~~~~~ 124 (153)
T cd07067 84 --------------ARVLPALEELIAPHDGKNVLIVSHGGVLRALLAYLLGLSDE 124 (153)
T ss_pred --------------CCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCHH
T ss_conf --------------36377999998566899689995639999999999595989
No 247
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.69 E-value=32 Score=15.23 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=66.6
Q ss_pred HHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHH
Q ss_conf 7778765305855518851665---6357899999970997999832676763210000245455742899521320336
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGG 223 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGg 223 (310)
-||..+.. ...++-++..|. ||+.--+.+|+.+|+|+-.+....+- ........+-.+.|+|+||-.=.+-.
T Consensus 260 KLAArf~~--~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL---~~AL~~lkdka~~DLILIDTAGRS~R 334 (436)
T PRK11889 260 KMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM---TRALTYFKEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 99999861--69808999806634769999999999849943996888999---99999876336888899929898846
Q ss_pred ---HHHHHHHHHHHCCCCCEEEEEECCCCCHH---HHHHHHHCCCCEEEECC
Q ss_conf ---68889898752687521787205555716---89888636998999817
Q gi|254780409|r 224 ---TLCGAADALYEQGALSVTAYITHGVLSSS---SIERIEKSKMKELVITD 269 (310)
Q Consensus 224 ---Ti~~aa~~Lk~~GA~~V~~~~THgifs~~---a~e~l~~s~i~~iv~Tn 269 (310)
.+.+..+.+.......++++.+-.-=..+ .++++...+++.+|.|-
T Consensus 335 D~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l~idglIfTK 386 (436)
T PRK11889 335 ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 8999999999985127771699997889989999999972579988289971
No 248
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=36.53 E-value=32 Score=15.22 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=68.7
Q ss_pred HHCCC-CCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHH---HHHCCCCEEEEECCCCCCCCCEEECCCCCC
Q ss_conf 52588-62000103777787653058555188516656-35789999---997099799983267676321000024545
Q gi|254780409|r 133 GFFDI-PTDNLYALPILERDIKERNDISNLMVVSPDVG-GVVRARAL---AKRLGCLLAIVDKRREHPGKIEVMNIIGKV 207 (310)
Q Consensus 133 ~~F~i-p~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ra~~~---a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV 207 (310)
.+|.. |-+. .-...+++|+.+..+.+.+.++..|.. +...+..+ .+.+|..+.... +..++.......+-.+
T Consensus 110 ~~fr~~~~~~-~~~~~~~~~l~~~~~~~~vai~~~~~~~g~~~~~~~~~~l~~~g~~vv~~~--~~~~~~~d~~~~i~~l 186 (334)
T cd06342 110 NVFRVVARDD-QQGPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVARE--GTTDGATDFSAILTKI 186 (334)
T ss_pred CEEEECCCHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE--ECCCCCCCHHHHHHHH
T ss_conf 2899008878-999999999998759968999915655445579999999997498399999--6588766657899999
Q ss_pred --CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf --574289952132033668889898752687521787205555716898886369989998178
Q gi|254780409|r 208 --EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS 270 (310)
Q Consensus 208 --~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT 270 (310)
.+-++|++- ..+.......+.+++.|-+. -++.+.++.+....+.. ....+.++.+..
T Consensus 187 ~~~~~d~v~~~---~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 246 (334)
T cd06342 187 KAANPDAVFFG---GYYPEAGPLVRQMRQLGLKA-PFMGGDGLCDPEFIKIA-GDAAEGTYATFP 246 (334)
T ss_pred HHCCCCEEEEC---CCCHHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHHHH-HHHHCCCEEEEE
T ss_conf 86599999992---67558999999999769997-59996777878999864-575458189940
No 249
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.00 E-value=33 Score=15.16 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=63.2
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC---HHHHHCCCCCHHHCCCCC---------CCCCCHHHHHHHHH
Q ss_conf 689708998597888046799999999999861720---011310233011034311---------25652147776520
Q gi|254780409|r 45 VRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR---RITGVIPYFGYCRQDRKP---------SPRTPISAKLVANL 112 (310)
Q Consensus 45 vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~---~it~ViPY~~YaRqDr~~---------~~~e~isak~~a~l 112 (310)
..+-|++|+.+.-+|-+....++ +.++|+.|.. ++-+..-+++..+..+.+ ..|-.-|+.+++.+
T Consensus 67 ~~~~d~vV~SPGI~p~~p~~~~~---l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~i 143 (501)
T PRK02006 67 LDGVELVALSPGLSPLEPALAAL---LAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLL 143 (501)
T ss_pred HCCCCEEEECCEECCCCCCHHHH---HHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 46899999899008888543199---999998799587689999988763022235687489993899668799999999
Q ss_pred HEECCCCE-------------------------EEEECCCCHHHHHH--C--------CCCCEECCHHHHHHHHHHHH--
Q ss_conf 00026772-------------------------69951583577652--5--------88620001037777876530--
Q gi|254780409|r 113 ITQAGADR-------------------------VIMLDLHAGQVQGF--F--------DIPTDNLYALPILERDIKER-- 155 (310)
Q Consensus 113 l~~~G~d~-------------------------vit~DlH~~~~~~~--F--------~ip~~nl~~~~~l~~~l~~~-- 155 (310)
|+.+|.+- ++.+++=|-|++.. | |+.-|||+-..-+.+|+..+
T Consensus 144 L~~~g~~~~~~GNIG~p~l~~l~~~~~~~~~~d~~VlElSSfQLe~~~~~~p~vaVilNIs~DHLD~h~s~e~Y~~aK~r 223 (501)
T PRK02006 144 CERAGKKVAVAGNISPAALDKLAEAIDAAALPDVWVLELSSFQLETTHTFAPDAATVLNITQDHLDWHGSMAAYAAAKGR 223 (501)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHH
T ss_conf 99769974652564610267787642257768689999664675756557967899907886564442379999999998
Q ss_pred -CCCCCEEEEECCC
Q ss_conf -5855518851665
Q gi|254780409|r 156 -NDISNLMVVSPDV 168 (310)
Q Consensus 156 -~~~~~~vVVaPD~ 168 (310)
.......|+.-|.
T Consensus 224 if~~~~~~V~n~DD 237 (501)
T PRK02006 224 IFGPATVRVLNRDD 237 (501)
T ss_pred HHCCCCEEEEECCC
T ss_conf 72348559994888
No 250
>PRK06256 biotin synthase; Validated
Probab=35.92 E-value=33 Score=15.15 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCHHHCC--CC------CC--CCCCH------HHHHHHHHHEECCCCEEEEECCCCH
Q ss_conf 999999999861720011310233011034--31------12--56521------4777652000026772699515835
Q gi|254780409|r 66 ELLIMIDAVRRSSARRITGVIPYFGYCRQD--RK------PS--PRTPI------SAKLVANLITQAGADRVIMLDLHAG 129 (310)
Q Consensus 66 eLl~~~~a~k~~~A~~it~ViPY~~YaRqD--r~------~~--~~e~i------sak~~a~ll~~~G~d~vit~DlH~~ 129 (310)
|.+-.+..++..|+.++.+|.-.-+|...+ +. -+ .+-.+ ..+--++.|..+|+|+.- ..+-+
T Consensus 94 eI~~~a~~a~~~G~~~~~lvtsg~~~~~~~~e~v~~~i~~Ik~~~~l~i~~slG~l~~e~~~~LkeAGvd~y~-~nlET- 171 (325)
T PRK06256 94 EIVEAAKEAIENGAGRFCIVASGRGPSGREVDQVIEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYN-HNLET- 171 (325)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEC-CCCCC-
T ss_conf 9999999999869988999860458976789999999999862289368873488999999999986998886-66440-
Q ss_pred HHHHHCC-C-CCEECCHHHH-HHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 7765258-8-6200010377-77876530-5855518851665635789999997
Q gi|254780409|r 130 QVQGFFD-I-PTDNLYALPI-LERDIKER-NDISNLMVVSPDVGGVVRARALAKR 180 (310)
Q Consensus 130 ~~~~~F~-i-p~~nl~~~~~-l~~~l~~~-~~~~~~vVVaPD~G~~~ra~~~a~~ 180 (310)
-..||. + |..+. -..+ ..+..++- ...---.+++--..-..|+..+...
T Consensus 172 -s~~~f~~i~~tht~-~~Rl~ti~~a~~aGi~vcsG~i~GlGEt~edrve~l~~L 224 (325)
T PRK06256 172 -SRSYFPNVVTTHTY-EDRVDTCEMVKAAGIEPCSGGIIGMGETLEDRAEHAFFL 224 (325)
T ss_pred -CHHHCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf -68763886899889-999999999998599646643766899989999999999
No 251
>pfam08665 PglZ PglZ domain. This family is a member of the Alkaline phosphatase clan.
Probab=35.83 E-value=33 Score=15.14 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 668889898752687521787205555
Q gi|254780409|r 223 GTLCGAADALYEQGALSVTAYITHGVL 249 (310)
Q Consensus 223 gTi~~aa~~Lk~~GA~~V~~~~THgif 249 (310)
..+..+++.|.+.|..+|++.+=||.+
T Consensus 144 ~~L~~lv~~L~~~~~~~i~ITADHGFi 170 (176)
T pfam08665 144 GELKDLVRKLINRLGYNVVLTADHGFI 170 (176)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 999999999997799589998773577
No 252
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=35.65 E-value=9.1 Score=18.84 Aligned_cols=185 Identities=19% Similarity=0.267 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 65214777652000026772699515835776525886200010377778765305855518851665635789999997
Q gi|254780409|r 101 RTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKR 180 (310)
Q Consensus 101 ~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~ 180 (310)
=.|+..+.+++.++.-| +-+- |.+...| ........-++-||+ .+.+-+||++=| |+..=|+.+.++
T Consensus 47 i~~l~~~~V~~Ii~~GG-T~L~-----tAR~~EF-----K~~evR~kA~~nLK~-~GI~~LVViGGD-GSy~GA~~L~~~ 113 (302)
T TIGR02482 47 IVPLKSKAVSGIISKGG-TILG-----TARCPEF-----KTEEVREKAVENLKK-LGIEALVVIGGD-GSYTGAQKLYEE 113 (302)
T ss_pred EECCCCCCHHCCCCCCC-CEEE-----CCCCCCC-----CCHHHHHHHHHHHHH-HCCCEEEEECCC-HHHHHHHHHHHH
T ss_conf 34246644001001588-3331-----1478545-----687899999999887-488668998684-406889999971
Q ss_pred CCCCE----------------------------EEEECCCCCCC---CCEEECCCC----C-------CCCCEEEEECHH
Q ss_conf 09979----------------------------99832676763---210000245----4-------557428995213
Q gi|254780409|r 181 LGCLL----------------------------AIVDKRREHPG---KIEVMNIIG----K-------VEGKDCILIDDI 218 (310)
Q Consensus 181 L~~~~----------------------------~~~~K~R~~~~---~v~~~~~~g----d-------V~gr~vIIVDDi 218 (310)
-+.|+ .-++|-||... ..-..++.| | .-|-+.|++--+
T Consensus 114 gg~~~iGlPGTIDNDI~~TDyTIGfDTALNTi~~avdKiRDTA~SHeR~f~iEVMGR~aGdLAl~aaiAtGAE~i~~pE~ 193 (302)
T TIGR02482 114 GGIPVIGLPGTIDNDIQGTDYTIGFDTALNTILDAVDKIRDTATSHERAFVIEVMGRHAGDLALYAAIATGAEIIIIPEF 193 (302)
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHEEECCCC
T ss_conf 79847874585025666432255666674379987765421301216568999507855789999988640102115888
Q ss_pred HCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHH---HHHHH-HC-CC-CEEEECCCCCC--CHHHHCCCCEEEEECH
Q ss_conf 20336688898987526875-217872055557168---98886-36-99-89998178878--4347407985998117
Q gi|254780409|r 219 VDTGGTLCGAADALYEQGAL-SVTAYITHGVLSSSS---IERIE-KS-KM-KELVITDSIQP--TDLVKSSAKIRILTIA 289 (310)
Q Consensus 219 i~TGgTi~~aa~~Lk~~GA~-~V~~~~THgifs~~a---~e~l~-~s-~i-~~iv~TnTi~~--~~~~~~~~ki~visva 289 (310)
--+=..|++-++.=.++|-+ +|.+.++=-+ .+++ -++++ +. ++ .++.+-==+.+ .|-. +..+=-+
T Consensus 194 ~~~~~~l~~~~k~~~~~~k~~SiI~~ae~~~-~g~~~e~A~~iene~~g~~tR~~vLGH~QRGG~P~a-----~DR~LAs 267 (302)
T TIGR02482 194 DLDIEELIERIKEQREAGKKNSIIIVAEGNI-LGNAKEVAKKIENEKTGIETRVTVLGHTQRGGSPSA-----FDRILAS 267 (302)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEEEEE-CCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCH-----HHHHHHH
T ss_conf 8898999999999986089961899995101-477678887630478984289999756647979648-----7888999
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999998718887
Q gi|254780409|r 290 QLMGEAINRTFEERS 304 (310)
Q Consensus 290 ~llA~aI~~i~~~~S 304 (310)
.|=+.|++.+..|++
T Consensus 268 ~lG~~AvE~L~~g~~ 282 (302)
T TIGR02482 268 RLGAKAVELLLEGKS 282 (302)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999863982
No 253
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=35.62 E-value=33 Score=15.12 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=14.0
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 87205555716898886369989998178878
Q gi|254780409|r 242 AYITHGVLSSSSIERIEKSKMKELVITDSIQP 273 (310)
Q Consensus 242 ~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~ 273 (310)
+.+|=|+=... .+...+.+.+-+|+=-.|..
T Consensus 161 i~VtpGIr~~t-~~~a~~~gad~iVVGR~It~ 191 (202)
T cd04726 161 VAVAGGITPDT-LPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred EEECCCCCHHH-HHHHHHCCCCEEEECCCCCC
T ss_conf 78899988540-99999759999998983457
No 254
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=35.28 E-value=33 Score=15.09 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCCEEEEECCC-CHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 55518851665-6357899999970997999832676
Q gi|254780409|r 158 ISNLMVVSPDV-GGVVRARALAKRLGCLLAIVDKRRE 193 (310)
Q Consensus 158 ~~~~vVVaPD~-G~~~ra~~~a~~L~~~~~~~~K~R~ 193 (310)
-.|+.+++|-- |-.-.|+.+|+.|++||++.+-+..
T Consensus 109 KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~l 145 (411)
T PRK05342 109 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 145 (411)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEE
T ss_conf 4538998999977889999999986999899861200
No 255
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=35.16 E-value=34 Score=15.07 Aligned_cols=30 Identities=7% Similarity=-0.060 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 0467999999999998617200113102330
Q gi|254780409|r 60 ANDYLMELLIMIDAVRRSSARRITGVIPYFG 90 (310)
Q Consensus 60 ~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~ 90 (310)
..-++-|+..--..++++|- .|+++-|==+
T Consensus 21 TG~~l~Ela~Py~~f~~AG~-~VdiASp~Gg 50 (232)
T cd03148 21 TGNHPVEMLLPLYHLHAAGF-DFDVATLSGL 50 (232)
T ss_pred CCCCHHHHHHHHHHHHHCCC-EEEEECCCCC
T ss_conf 87899999999999998898-2999899999
No 256
>KOG2672 consensus
Probab=35.14 E-value=34 Score=15.07 Aligned_cols=140 Identities=16% Similarity=0.258 Sum_probs=60.4
Q ss_pred EEEEEECCCCEEEEEECCCCCCCEEEEECC--CCCCCHHH---------HHHHHHHHHHHHHCCCCHHHHHCCCCCHHHC
Q ss_conf 448998699707888567868970899859--78880467---------9999999999986172001131023301103
Q gi|254780409|r 26 KASVTYFSDREVFVEIGENVRGEDVFIVQS--TSCPANDY---------LMELLIMIDAVRRSSARRITGVIPYFGYCRQ 94 (310)
Q Consensus 26 ~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs--~~~~~nd~---------lmeLl~~~~a~k~~~A~~it~ViPY~~YaRq 94 (310)
+.--.+-|-||-+.+|..++|+-..--|+- -||...+- .--.++|-|+|-|.. |..-| --||.
T Consensus 62 ~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~d~~~ATATIMlmGDTCTRGC--RFCsV----KTsR~ 135 (360)
T KOG2672 62 PWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECWGGGDKSTATATIMLMGDTCTRGC--RFCSV----KTSRN 135 (360)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHCCCCCCCCCEEEEEEEECCCCCCCC--CEEEE----ECCCC
T ss_conf 6651658787558999988864741220143069941412488987523689886347434675--20121----03788
Q ss_pred CCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHC-CCCCEE--EEECCCCHH
Q ss_conf 43112565214777652000026772699515835776525886200010377778765305-855518--851665635
Q gi|254780409|r 95 DRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERN-DISNLM--VVSPDVGGV 171 (310)
Q Consensus 95 Dr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~-~~~~~v--VVaPD~G~~ 171 (310)
--.-.|.||- -.|..+..-|+|-|+.-..-... .|= -++..+++-++.-. .-.++. -..||..|-
T Consensus 136 PpPlDp~EPe---NTAeAIasWgl~YiVlTSVDRDD------lpD---gGa~HiAkTVq~iK~k~p~ilvE~L~pDF~Gd 203 (360)
T KOG2672 136 PPPLDPNEPE---NTAEAIASWGLDYIVLTSVDRDD------LPD---GGANHIAKTVQKIKEKAPEILVECLTPDFRGD 203 (360)
T ss_pred CCCCCCCCCC---CHHHHHHHCCCCEEEEEECCCCC------CCC---CCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC
T ss_conf 9677999864---48999997188869997114564------767---52278999999998528423213247554573
Q ss_pred HH-HHHHHHHCCCC
Q ss_conf 78-99999970997
Q gi|254780409|r 172 VR-ARALAKRLGCL 184 (310)
Q Consensus 172 ~r-a~~~a~~L~~~ 184 (310)
.. ++.+| .-|.+
T Consensus 204 ~~~Ve~va-~SGLD 216 (360)
T KOG2672 204 LKAVEKVA-KSGLD 216 (360)
T ss_pred HHHHHHHH-HCCCC
T ss_conf 47999998-53740
No 257
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=35.05 E-value=32 Score=15.21 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCHHHHHCCCCC----HHHCCCCC-----CCC----CCH--HHHHHHHHHEECCCCEEEEECCCCHHHHH
Q ss_conf 9999998617200113102330----11034311-----256----521--47776520000267726995158357765
Q gi|254780409|r 69 IMIDAVRRSSARRITGVIPYFG----YCRQDRKP-----SPR----TPI--SAKLVANLITQAGADRVIMLDLHAGQVQG 133 (310)
Q Consensus 69 ~~~~a~k~~~A~~it~ViPY~~----YaRqDr~~-----~~~----e~i--sak~~a~ll~~~G~d~vit~DlH~~~~~~ 133 (310)
-|..|++-.|..+.. ||+ |.=.-... .|+ .++ .+.-++.+|..-..+-|+|.|.+-.
T Consensus 64 El~~a~~~LGv~~~~----~LG~~~~y~DSGm~g~p~~~~p~aF~~a~~~eaa~~L~~~ir~~rP~VvvTyd~~Gg---- 135 (284)
T TIGR03445 64 ELTAALRALGVGDPR----FLGGAGRWRDSGMAGTPSRSRPRAFVDADVDEAAGALVAVIREVRPHVVVTYDPNGG---- 135 (284)
T ss_pred HHHHHHHHHCCCCCE----ECCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC----
T ss_conf 999999973898624----678887668899988988889863211999999999999999848876998789998----
Q ss_pred HCCCCCEECCHHHHHHHHHH
Q ss_conf 25886200010377778765
Q gi|254780409|r 134 FFDIPTDNLYALPILERDIK 153 (310)
Q Consensus 134 ~F~ip~~nl~~~~~l~~~l~ 153 (310)
| .--||+.+...-...+.
T Consensus 136 -Y-GHPDHi~~H~vt~~A~~ 153 (284)
T TIGR03445 136 -Y-GHPDHIQAHRVTTRAVE 153 (284)
T ss_pred -C-CCCHHHHHHHHHHHHHH
T ss_conf -9-99439999999999999
No 258
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.00 E-value=34 Score=15.06 Aligned_cols=77 Identities=19% Similarity=0.083 Sum_probs=47.1
Q ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEE-CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8997689999999999995891044489986997078885-678689708998597888046799999999999861720
Q gi|254780409|r 2 KIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEI-GENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 2 ~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i-~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
.+|+--++...|+..+.+| .++......-.+|+|..... .-..+..|++++=|.++. .-|++..+..+|+.|++
T Consensus 2 ~i~GiG~Sg~iA~~~~~~l-~r~~g~~~~~~~d~~~~~~~~~~~~~~~D~vi~iS~SG~----t~e~~~~~~~ak~~g~~ 76 (87)
T cd04795 2 FVIGIGGSGAIAAYFALEL-LELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGR----TEELLAALEIAKELGIP 76 (87)
T ss_pred EEEECCHHHHHHHHHHHHH-HHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCC----CHHHHHHHHHHHHCCCC
T ss_conf 9997175699999999998-751494179989528777646513789998999979979----88999999999987998
Q ss_pred HHH
Q ss_conf 011
Q gi|254780409|r 81 RIT 83 (310)
Q Consensus 81 ~it 83 (310)
-|.
T Consensus 77 vi~ 79 (87)
T cd04795 77 VIA 79 (87)
T ss_pred EEE
T ss_conf 999
No 259
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=34.94 E-value=29 Score=15.48 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=33.3
Q ss_pred EEEEECHHHCCHHHH---HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 289952132033668---88989875268752178720555571689888636998999817887
Q gi|254780409|r 211 DCILIDDIVDTGGTL---CGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQ 272 (310)
Q Consensus 211 ~vIIVDDii~TGgTi---~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~ 272 (310)
+-+|+=||-+=|..- .+..+..++.--+.|+.-- |+..-.-+|+..+.|++-+.+...++
T Consensus 164 ~GlI~LdI~sVGt~~G~n~ell~~~l~l~e~PV~~GG--Gi~g~EdlEl~~~mGv~avLvatA~H 226 (230)
T TIGR00734 164 DGLIVLDISSVGTSKGVNLELLKKVLELSERPVILGG--GIKGVEDLELLKEMGVSAVLVATAVH 226 (230)
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECC--CCCCCCHHHHHHHCCCCEEEEEEEEC
T ss_conf 1379833633056778788899988644248714068--73675107888856876575532100
No 260
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=34.85 E-value=34 Score=15.04 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHC---CCCEEEEECCCCCCCC-CEEECCCCCC--CCCEEEEEC
Q ss_conf 03777787653058555188516656-357899999970---9979998326767632-1000024545--574289952
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDVG-GVVRARALAKRL---GCLLAIVDKRREHPGK-IEVMNIIGKV--EGKDCILID 216 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ra~~~a~~L---~~~~~~~~K~R~~~~~-v~~~~~~gdV--~gr~vIIVD 216 (310)
-...+++|+.+....+.+.++.+|.. +...++.+.+.+ +..+.++.......+. ......+..+ .+-++|++
T Consensus 129 ~~~~~a~~~~~~~~~k~vai~~~d~~~g~~~~~~~~~~~~~~~~g~~vv~~~~~p~~~~~Df~~~i~~i~~~~pd~v~~- 207 (342)
T cd06329 129 KMEALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVIT- 207 (342)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEE-
T ss_conf 9999999999768997699936997376999999999999816995887678525888776699999998669999999-
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 1320336688898987526875217872055557168988863699899981
Q gi|254780409|r 217 DIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 217 Dii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~T 268 (310)
...+.......+.+++.|-+.-. .++........+.+.+....-+..+
T Consensus 208 --~~~~~~~~~~~kq~~~~g~~~~~--~~~~~~~~~~~~~~g~~~~g~~~~~ 255 (342)
T cd06329 208 --GNWGNDLLLLVKQAADAGLKLPF--YTPYLDQPGNPAALGEAGLGLVVAV 255 (342)
T ss_pred --CCCCHHHHHHHHHHHHCCCCCCE--EEEECCCHHHHHHHHHHHCCEEEEE
T ss_conf --37755699999999976999818--9970787789987566433749996
No 261
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=34.66 E-value=34 Score=15.02 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=5.4
Q ss_pred CCCCEEEEECHH
Q ss_conf 557428995213
Q gi|254780409|r 207 VEGKDCILIDDI 218 (310)
Q Consensus 207 V~gr~vIIVDDi 218 (310)
.++.++|++|++
T Consensus 70 ~~~~~~vLiDcl 81 (166)
T pfam02283 70 LPGGDVVLVDCL 81 (166)
T ss_pred CCCCCEEEEECH
T ss_conf 698986999717
No 262
>PRK06196 oxidoreductase; Provisional
Probab=34.59 E-value=34 Score=15.02 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=7.4
Q ss_pred EECHHHHHHHHHHH
Q ss_conf 81179999999987
Q gi|254780409|r 286 LTIAQLMGEAINRT 299 (310)
Q Consensus 286 isva~llA~aI~~i 299 (310)
..-.+-+|+.++..
T Consensus 293 ~A~D~~~a~kLW~~ 306 (316)
T PRK06196 293 HAIDPEQAARLWDL 306 (316)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 46999999999999
No 263
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=34.58 E-value=34 Score=15.01 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 45574289952132033668889898752687521787
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
+.+||+|+| |-.|.|-+.++...++.||++|+..
T Consensus 278 ~~~Gk~VvV----IGGGntAmD~arta~R~GA~~V~rr 311 (472)
T PRK12810 278 LAKGKHVVV----IGGGDTGMDCVGTSIRQGAKSVTQR 311 (472)
T ss_pred CCCCCEEEE----ECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 224765899----8986689999999997389689997
No 264
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=34.50 E-value=34 Score=15.01 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 0336688898987526875-217872055557168988863699899981
Q gi|254780409|r 220 DTGGTLCGAADALYEQGAL-SVTAYITHGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 220 ~TGgTi~~aa~~Lk~~GA~-~V~~~~THgifs~~a~e~l~~s~i~~iv~T 268 (310)
.+++.+..+++++++.|.. +|.++ .+-. +..+.+.|++-.+.-.+.-
T Consensus 192 ~~~~~~~ga~~Al~~~g~~~~v~vv-g~D~-~~~~~~~l~~G~i~a~v~Q 239 (275)
T cd06307 192 NAGGGNRGVIRALREAGRAGKVVFV-GHEL-TPETRAALRDGTIDAVIDQ 239 (275)
T ss_pred ECCCCHHHHHHHHHHCCCCCCEEEE-ECCC-CHHHHHHHHCCCCEEEEEC
T ss_conf 8487169999999973999986999-6279-9899999981983799935
No 265
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=33.96 E-value=35 Score=14.95 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=6.5
Q ss_pred CCCCEEEEECCC
Q ss_conf 689708998597
Q gi|254780409|r 45 VRGEDVFIVQST 56 (310)
Q Consensus 45 vrg~dV~ivqs~ 56 (310)
-.|+.|-||.|.
T Consensus 135 ~tgkkVAVIGaG 146 (560)
T PRK12771 135 DTGKRVAVIGGG 146 (560)
T ss_pred CCCCEEEEECCC
T ss_conf 789989998977
No 266
>PRK06197 short chain dehydrogenase; Provisional
Probab=33.93 E-value=35 Score=14.95 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=11.1
Q ss_pred EEEECCCCHHHHHHHHHHHC
Q ss_conf 89976899999999999958
Q gi|254780409|r 2 KIFAGNSNRNLAQEICDYLH 21 (310)
Q Consensus 2 ~i~~g~~~~~La~~ia~~lg 21 (310)
.|++|.++ .++.+.|+.|-
T Consensus 19 ~lITGa~s-GIG~~~A~~La 37 (306)
T PRK06197 19 AVVTGANT-GLGYETAAALA 37 (306)
T ss_pred EEECCCCC-HHHHHHHHHHH
T ss_conf 99916895-99999999999
No 267
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.70 E-value=35 Score=14.92 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=46.4
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 57428995213203366888989875268752178720555571689888636998999817
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD 269 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn 269 (310)
.|-|+|..|.| +-.++.++++.+++.+. ++..-++=|+=..+ ++.+..++++-|.++-
T Consensus 212 ~g~DiI~LDnm--~~~~~~~~v~~l~~~~~-~v~iEaSGgIn~~n-i~~yA~tGVD~Is~ga 269 (285)
T PRK07428 212 YGADIIMLDNM--PVDQMQQAVQLIRQQNP-RVKIEASGNITLET-IRAVAETGVDYISTSA 269 (285)
T ss_pred CCCCEEEECCC--CHHHHHHHHHHHHHHCC-CEEEEEECCCCHHH-HHHHHHCCCCEEECCH
T ss_conf 69999998799--99999999999873089-88999989999999-9999974999998383
No 268
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691 This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=33.49 E-value=24 Score=16.07 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCC
Q ss_conf 786897089985978880467999999999998617200113102330110343
Q gi|254780409|r 43 ENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDR 96 (310)
Q Consensus 43 ~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr 96 (310)
+.|.|+-=|+=.+. .. ++=|.+-+...++++||.---+++|||-==-|+-
T Consensus 64 ~~~~GR~P~~PGTG--~~--~~~ETl~~T~~A~E~GA~~AMVIVPYY~KPNQE~ 113 (294)
T TIGR02313 64 DTVAGRVPVIPGTG--AL--RLDETLELTKKAKEAGADAAMVIVPYYVKPNQEA 113 (294)
T ss_pred HHHCCCCCCCCCCC--CC--CHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHH
T ss_conf 76168412237887--65--4035788888888506772157744777987567
No 269
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=33.48 E-value=36 Score=14.90 Aligned_cols=67 Identities=19% Similarity=0.340 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHCC--CCCHHHCCCCCCCCCCHHHHH-------HHHHHEECCCCEEEEECCCCH
Q ss_conf 467999999999998617200113102--330110343112565214777-------652000026772699515835
Q gi|254780409|r 61 NDYLMELLIMIDAVRRSSARRITGVIP--YFGYCRQDRKPSPRTPISAKL-------VANLITQAGADRVIMLDLHAG 129 (310)
Q Consensus 61 nd~lmeLl~~~~a~k~~~A~~it~ViP--Y~~YaRqDr~~~~~e~isak~-------~a~ll~~~G~d~vit~DlH~~ 129 (310)
-|+++--.+.-.++.+.++. ..|.| |++||...+.|..--.++... +++-|...|+++++.++=|-.
T Consensus 40 TD~~ia~~ia~~~~~~~~~~--a~vlP~i~yG~s~eH~~fpGTitl~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGG 115 (250)
T COG1402 40 TDALIAEAIAEKVAERLGAE--ALVLPTIYYGVSLEHMGFPGTITLSPETLIALLVELVESLARHGFRKFVIVNGHGG 115 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCC--EEEECCCCCCCCHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 22899999999999971897--28817660202564447995287268889999999999999638637999945887
No 270
>KOG1377 consensus
Probab=33.39 E-value=36 Score=14.89 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=56.5
Q ss_pred EEEC-CCCHHHHHHHHHHHCCCCEEE--------EECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHH
Q ss_conf 8516-656357899999970997999--------8326767632100002454557428995213203366888989875
Q gi|254780409|r 163 VVSP-DVGGVVRARALAKRLGCLLAI--------VDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALY 233 (310)
Q Consensus 163 VVaP-D~G~~~ra~~~a~~L~~~~~~--------~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk 233 (310)
+|+| =+|+..++..+++..+++... -.|.-..++ ..+..+..+.++|-+++.||...+|.-+.++
T Consensus 100 tvg~qY~gg~~kia~wadl~n~h~v~g~~i~~g~~rk~~k~~~-egG~lllAems~kg~L~~~dy~ea~~aI~ee----- 173 (261)
T KOG1377 100 TVGLQYKGGPLKIASWADLVNAHGVPGRGIIKGLNRKLLKDHG-EGGVLLLAELSSKGSLITGDYTEAATAIAEE----- 173 (261)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCC-CCCEEEEEEECCCCCEEEHHHHHHHHHHHHH-----
T ss_conf 0031005521788899988845685660389988650044688-7725999872467714602488999999984-----
Q ss_pred HCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 2687521787205555716898886369989998178878
Q gi|254780409|r 234 EQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQP 273 (310)
Q Consensus 234 ~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~ 273 (310)
--.-+...++--+++.+-.+.+..++++.-..+|++-+
T Consensus 174 --~~d~~~G~v~g~~~~ldrq~l~~tpgv~~d~~~d~lgq 211 (261)
T KOG1377 174 --DIDFVNGFVAGSIVALDRQELIMTPGVELDAAGDNLGQ 211 (261)
T ss_pred --HHCHHEEEEEEEEEECCHHHHCCCCCCCCCHHHCCHHH
T ss_conf --31211048842144056776216888763300000221
No 271
>PRK07431 aspartate kinase; Provisional
Probab=33.27 E-value=36 Score=14.88 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=37.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEE
Q ss_conf 9708998597888046799999999999861720011310233011034311256521477765200002677269
Q gi|254780409|r 47 GEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122 (310)
Q Consensus 47 g~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vi 122 (310)
|.++++|-|--...-|.|++| ...+ .+-.++.-.|..-..||-+|+.+++-.|+..|++.+.
T Consensus 33 g~~vvVVVSAmg~~Td~L~~l---a~~i-----------~~~~~~re~D~lls~GE~~S~~Lla~~L~~~G~~a~s 94 (594)
T PRK07431 33 GNDVVVVVSAMGKTTDELVKL---AEEI-----------SDNPPRREMDMLLSTGEQVSIALLSMALQELGQPAIS 94 (594)
T ss_pred CCCEEEEECCCCCHHHHHHHH---HHHH-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 899999974998729999999---9987-----------4799989999999775999999999999968997199
No 272
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=33.21 E-value=36 Score=14.87 Aligned_cols=100 Identities=12% Similarity=0.015 Sum_probs=63.0
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCEEECCC--CCCCCCEEEEECHHHCCHH
Q ss_conf 77787653058555188516656357899999970997-99983267676321000024--5455742899521320336
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCL-LAIVDKRREHPGKIEVMNII--GKVEGKDCILIDDIVDTGG 223 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~-~~~~~K~R~~~~~v~~~~~~--gdV~gr~vIIVDDii~TGg 223 (310)
.+++-+ +.++|+.++++--|..|..+.+.+-+.+... ..+..+ +...+.-...... -+-++..+||+|=-.+.+.
T Consensus 117 Ai~dli-~~~~W~~~~~iYd~d~gl~~Lq~ll~~~~~~~~~i~~~-~~~~~~~~~~~~L~~i~~~~~~~iVld~~~~~~~ 194 (324)
T cd06368 117 ALLDLI-KYFGWRKFVYIYDSDEGLLRLQELLDALSPKGIQVTVR-RLDDDTDMYRPLLKEIKREKERRIILDCSPERLK 194 (324)
T ss_pred HHHHHH-HHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999999-96798489999957720667999998653259779999-7789863589999999747977999989869999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 6888989875268752178720555
Q gi|254780409|r 224 TLCGAADALYEQGALSVTAYITHGV 248 (310)
Q Consensus 224 Ti~~aa~~Lk~~GA~~V~~~~THgi 248 (310)
.+.+.|+.+.-.+..-.+.+.+-.+
T Consensus 195 ~vl~qa~~lgm~~~~y~~iit~ld~ 219 (324)
T cd06368 195 EFLEQAVEVGMMSEYYHYILTNLDF 219 (324)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 9999998725556761899913641
No 273
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=33.17 E-value=36 Score=14.87 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=27.9
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 455742899521320336688898987526875217872
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
||+||-|+|-- .+-++..=+...+++||.-|.++=
T Consensus 45 dv~GKivLv~R----G~~~f~~K~~nA~~aGA~gvIiyN 79 (143)
T cd02133 45 DVKGKIALIQR----GEITFVEKIANAKAAGAVGVIIYN 79 (143)
T ss_pred CCCCCEEEEEC----CCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 75771899989----987789999999976982999984
No 274
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=32.81 E-value=37 Score=14.83 Aligned_cols=131 Identities=10% Similarity=0.066 Sum_probs=75.8
Q ss_pred EEEEECCCCEEEEEECCCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCC
Q ss_conf 48998699707888567868970899---859788804679999999999986172001131023301103431125652
Q gi|254780409|r 27 ASVTYFSDREVFVEIGENVRGEDVFI---VQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTP 103 (310)
Q Consensus 27 ~~~~~F~dGE~~v~i~~~vrg~dV~i---vqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~ 103 (310)
+.+|+-||- ..+++... +. +. ++..-.|-|++-+|--+-+ |..|. .|+++. -++.+
T Consensus 5 VciKqVPD~-~~~~~~~d--~~--l~~~~~~~~iNp~D~~AlE~Al~l---k~~gg-~v~vvs------------~G~~~ 63 (254)
T PRK12342 5 TCFKLVPEE-QDIVVTPE--YT--LNFDNAEAKISQFDLNAIEAASQL---ATDGD-EIAALT------------VGGSL 63 (254)
T ss_pred EEEEECCCC-CEEEECCC--CC--EEECCCCCCCCCCCHHHHHHHHHH---HHCCC-CEEEEE------------ECCCC
T ss_conf 999988885-50588489--97--885378655686569999999998---86199-699999------------56880
Q ss_pred HHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEE---ECCCCHHHHHHHHHHH
Q ss_conf 1477765200002677269951583577652588620001037777876530585551885---1665635789999997
Q gi|254780409|r 104 ISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVV---SPDVGGVVRARALAKR 180 (310)
Q Consensus 104 isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVV---aPD~G~~~ra~~~a~~ 180 (310)
..+..+-+-.-++|+|+.+.+. .+.+. -.|.+..+..|++++++. + -++++. |.|.+...-...+|+.
T Consensus 64 ~~~~~~~r~alAmGaD~a~li~--d~~~~-----g~D~~~tA~~La~~i~~~-~-~DLVl~G~~s~D~~tgqvg~~lAe~ 134 (254)
T PRK12342 64 LQNSKVRKDVLSRGPHSLYLVQ--DAQLE-----HALPLDTAKALAAAIEKI-G-FDLLLFGEGSGDLYAQQVGLLLGEL 134 (254)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE--CCCCC-----CCCHHHHHHHHHHHHHHH-C-CCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 2559999999973798899984--57656-----668899999999999983-9-6999993621248988578999987
Q ss_pred CCCCEEE
Q ss_conf 0997999
Q gi|254780409|r 181 LGCLLAI 187 (310)
Q Consensus 181 L~~~~~~ 187 (310)
||.|+..
T Consensus 135 Lg~P~vt 141 (254)
T PRK12342 135 LQLPVIN 141 (254)
T ss_pred CCCCCEE
T ss_conf 0997166
No 275
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.27 E-value=37 Score=14.77 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=39.0
Q ss_pred CCEEEEECHHHCCHHHHHH-HHHHHHHCCCCCEEEEEECCCC------CHHHHHHHHHCCCCEEEECCCC
Q ss_conf 7428995213203366888-9898752687521787205555------7168988863699899981788
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCG-AADALYEQGALSVTAYITHGVL------SSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~-aa~~Lk~~GA~~V~~~~THgif------s~~a~e~l~~s~i~~iv~TnTi 271 (310)
+-++|.+--+.-.+.+++. ..+.|++.|...+.+++- |.. ...-.++|.+.|++.++...|-
T Consensus 54 ~ad~igiSsl~G~~~~~~~~l~~~l~~~g~~di~vvvG-G~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT~ 122 (137)
T PRK02261 54 DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVG-GNLVVGKHDFEEVEKKFKEMGFDRVFAPGTD 122 (137)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 99999971111266127999999999679999969983-6216788783999999997797988797889
No 276
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=32.18 E-value=37 Score=14.76 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=53.1
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHH
Q ss_conf 7787653058555188516656357899999970---9979998326767632100002454557428995213203366
Q gi|254780409|r 148 LERDIKERNDISNLMVVSPDVGGVVRARALAKRL---GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGT 224 (310)
Q Consensus 148 l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L---~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgT 224 (310)
.++.+. +-+++.+++-. ++..-|..++.+| |...... .+. +. .........-.||+|+=..-..-..
T Consensus 134 av~li~---~A~~I~i~G~G-~S~~vA~~~~~kl~rlG~~~~~~---~d~-~~--~~~~a~~l~~~Dv~i~iS~sG~t~e 203 (293)
T PRK11337 134 AARFFY---QARQRDLYGAG-GSNAICADVQHKFLRIGVRCQAY---PDA-HI--MMMSASLLQEGDVVLVVSHSGRTSD 203 (293)
T ss_pred HHHHHH---HCCCEEEEEEC-CHHHHHHHHHHHHHHCCCEEEEE---CCH-HH--HHHHHHHCCCCCEEEEEECCCCCHH
T ss_conf 999998---27970899857-26999999999999859804764---777-89--9999971899988999818999889
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 88898987526875217872055557168988863699899981788
Q gi|254780409|r 225 LCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 225 i~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
++++++..|++||+ |. +.|..--|+ +-++ .+-++.+.+-
T Consensus 204 ~i~~~~~Ak~~Ga~-vI-~IT~~~~Sp--La~~----aD~vL~~~~~ 242 (293)
T PRK11337 204 VKAAVELAKQNGAK-II-CITHSYHSP--IAKL----ADYIICSPAP 242 (293)
T ss_pred HHHHHHHHHHCCCE-EE-EECCCCCCH--HHHH----CCEEEECCCC
T ss_conf 99999999987994-99-976999984--6895----8998864887
No 277
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=31.92 E-value=38 Score=14.73 Aligned_cols=174 Identities=24% Similarity=0.267 Sum_probs=84.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECC
Q ss_conf 97089985978880467999999999998617200113102330110343112565214777652000026772699515
Q gi|254780409|r 47 GEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDL 126 (310)
Q Consensus 47 g~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~Dl 126 (310)
+..+++|-|=..-+-|.|+++.. .-.-||-+|+++++..|+..|++.. .+|.
T Consensus 30 ~~~~vVVvSA~~g~Td~L~~~a~---------------------------ils~GE~lSa~lla~~L~~~Gi~a~-~l~~ 81 (227)
T cd04234 30 GNRVVVVVSAMGGVTDLLIELAL---------------------------LLSFGERLSARLLAAALRDRGIKAR-SLDA 81 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHCCCCEE-EECH
T ss_conf 89889997388432899999999---------------------------9929999999999999997899719-9641
Q ss_pred CCHHH--HHHCC-CCCEECCHHHHHHHHHHHHCCCCCEEEE----ECC---------CCHH-HHHHHHHHHCCCCEEEEE
Q ss_conf 83577--65258-8620001037777876530585551885----166---------5635-789999997099799983
Q gi|254780409|r 127 HAGQV--QGFFD-IPTDNLYALPILERDIKERNDISNLMVV----SPD---------VGGV-VRARALAKRLGCLLAIVD 189 (310)
Q Consensus 127 H~~~~--~~~F~-ip~~nl~~~~~l~~~l~~~~~~~~~vVV----aPD---------~G~~-~ra~~~a~~L~~~~~~~~ 189 (310)
..--+ .++|. -+..... ...+.+.+.+. ..+.|+ +-+ .||. --|..+|..|++.-..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~---~~v~Vv~GF~g~~~~G~~tTLGRGGSD~TA~~lA~~l~A~~~~I~ 157 (227)
T cd04234 82 RQAGITTDDNHGAARIIEIS-YERLKELLAEI---GKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIW 157 (227)
T ss_pred HHCEEECCCCCCCEEEHHHC-HHHHHHHHHHC---CCEEEECCEEEECCCCCEEEECCCCHHHHHHHHHHHHCCHHHEEE
T ss_conf 57206416876520645428-99999999738---967996260454058846883888567899999998186022221
Q ss_pred CCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 26767632100002454557428995213203366888989875268752178720555571689888636998999817
Q gi|254780409|r 190 KRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITD 269 (310)
Q Consensus 190 K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~Tn 269 (310)
+-=+ |--...+ --|+ +.-.++-+ |. +-+..|-..||+ ++-+.+++-..+..+ .|.+.|
T Consensus 158 TDVd--Gi~taDP--r~v~--~A~~i~~l-----sy-~Ea~ela~~Gak---------VlHp~ti~pa~~~~I-pi~i~n 215 (227)
T cd04234 158 TDVD--GIYTADP--RIVP--EARLIPEI-----SY-DEALELAYFGAK---------VLHPRAVEPARKANI-PIRVKN 215 (227)
T ss_pred ECCC--EEECCCC--CCCC--CCEEECCC-----CH-HHHHHHHHCCCC---------CCCHHHHHHHHHCCC-EEEEEC
T ss_conf 2687--0472799--7478--86240441-----99-999999977974---------169999999998698-399928
Q ss_pred CCCCC
Q ss_conf 88784
Q gi|254780409|r 270 SIQPT 274 (310)
Q Consensus 270 Ti~~~ 274 (310)
|..|+
T Consensus 216 t~~p~ 220 (227)
T cd04234 216 TFNPE 220 (227)
T ss_pred CCCCC
T ss_conf 99999
No 278
>PRK10628 hypothetical protein; Provisional
Probab=31.67 E-value=17 Score=17.12 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHHHHHHEECC
Q ss_conf 12565214777652000026
Q gi|254780409|r 98 PSPRTPISAKLVANLITQAG 117 (310)
Q Consensus 98 ~~~~e~isak~~a~ll~~~G 117 (310)
..+|.|--|+-++++|+..|
T Consensus 65 pa~G~p~lA~~v~~lL~~~~ 84 (246)
T PRK10628 65 PAPGSPALAQRLVELLAPVP 84 (246)
T ss_pred CCCCCHHHHHHHHHHHHCCC
T ss_conf 89889999999999851468
No 279
>pfam01634 HisG ATP phosphoribosyltransferase.
Probab=31.10 E-value=39 Score=14.64 Aligned_cols=51 Identities=31% Similarity=0.515 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 9999997099799983267676321000024545574289952132033668889898752687521
Q gi|254780409|r 174 ARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSV 240 (310)
Q Consensus 174 a~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V 240 (310)
++.|.+..|.+..++ ...|.+|..+..| + .|+|+ |+++||.|+ |+.|-+-+
T Consensus 76 t~~~~~~~gi~~~ii----~l~GavE~aP~~g-~--AD~Iv--Div~TG~TL-------k~NgL~~i 126 (161)
T pfam01634 76 ARKYFRKNGIDAEII----KLDGSVEAAPALG-I--ADAIV--DLVSTGETL-------RANGLKEI 126 (161)
T ss_pred HHHHHHHCCCEEEEE----ECCCCCCCCCCCC-C--CCEEE--EEECCHHHH-------HHCCCEEE
T ss_conf 999999819826899----7557334466667-6--66899--997888999-------98899991
No 280
>TIGR01330 bisphos_HAL2 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006239 Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. In plants these sequences represent a form of the enzyme, 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle. Sensitivity of this essential enzyme to sodium and other metal ions results is responsible for characterization of this enzyme as a salt tolerance protein . Some members of this family are active also as inositol 1-monophosphatase. ; GO: 0008441 3'(2')5'-bisphosphate nucleotidase activity, 0006790 sulfur metabolic process.
Probab=31.07 E-value=25 Score=15.95 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHEECC-----CCEEEEECCCCHHHHHHCC
Q ss_conf 565214777652000026-----7726995158357765258
Q gi|254780409|r 100 PRTPISAKLVANLITQAG-----ADRVIMLDLHAGQVQGFFD 136 (310)
Q Consensus 100 ~~e~isak~~a~ll~~~G-----~d~vit~DlH~~~~~~~F~ 136 (310)
+..+.|+..+-+.+.... ==|.+++|| -....||.+
T Consensus 117 ~~~~~S~~d~l~~Id~G~y~GGr~GR~W~LDP-iDGTkGFlR 157 (382)
T TIGR01330 117 LVKLKSAEDLLKIIDRGNYEGGRKGRHWVLDP-IDGTKGFLR 157 (382)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCEEEECC-CCCCCCCCC
T ss_conf 66756889999986257889888987577167-567655622
No 281
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=31.03 E-value=38 Score=14.72 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=35.2
Q ss_pred CCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCC
Q ss_conf 2001131023301103431125652147776520000267726995158
Q gi|254780409|r 79 ARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLH 127 (310)
Q Consensus 79 A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH 127 (310)
+..+|.+.|-- ...++++.|..++...++.|.+. |.++|+..++-
T Consensus 5 ~Hdit~i~p~~---~kg~~fkKG~vi~~eDI~~L~~~-G~~~v~va~le 49 (312)
T cd03522 5 AHDITRIGPGE---FKGRAFKKGHVLTAEDIAALLAA-GKEHVYVARLE 49 (312)
T ss_pred EECCEEECCCC---CCCCCCCCCCCCCHHHHHHHHHC-CCCEEEEEECC
T ss_conf 00020444786---66850368879889999999977-99679999778
No 282
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=30.98 E-value=39 Score=14.63 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=63.8
Q ss_pred HCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHH---HHHCCCCEEEEECCCCCCCCCEEECCCCCC--
Q ss_conf 258862000103777787653058555188516656-35789999---997099799983267676321000024545--
Q gi|254780409|r 134 FFDIPTDNLYALPILERDIKERNDISNLMVVSPDVG-GVVRARAL---AKRLGCLLAIVDKRREHPGKIEVMNIIGKV-- 207 (310)
Q Consensus 134 ~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ra~~~---a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV-- 207 (310)
+|..+..+-.....+++|++++ +.+++.++.+|.. |...++.+ .+++|..+..... ...+.......+..+
T Consensus 110 ~fr~~~~~~~~~~~~~~~~~~~-g~kkvail~~~~~yg~~~~~~~~~~~~~~G~~vv~~~~--~~~~~~Dfs~~l~ki~~ 186 (312)
T cd06333 110 VFKTPQNDRLMAEAILADMKKR-GVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADER--YGRTDTSVTAQLLKIRA 186 (312)
T ss_pred EEECCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEE--ECCCCCCHHHHHHHHHH
T ss_conf 7961598799999999999973-99889999617605599999999999977993999997--27987677999999985
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 57428995213203366888989875268752178720555571689888
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERI 257 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l 257 (310)
.+-|+|++- ..+.......+.+++.|-+. -.+.+.|+.+...++..
T Consensus 187 ~~pD~v~~~---~~~~~~~~~~~q~~~~G~~~-~~~~~~~~~~~~~~~~~ 232 (312)
T cd06333 187 ARPDAVLIW---GSGTPAALPAKNLRERGYKG-PIYQTHGVASPDFLRLA 232 (312)
T ss_pred CCCCEEEEE---CCCCHHHHHHHHHHHCCCCC-CEEECCCCCCHHHHHHH
T ss_conf 698999994---57516999999999769987-08812766787999987
No 283
>PRK13124 consensus
Probab=30.91 E-value=39 Score=14.62 Aligned_cols=155 Identities=15% Similarity=0.219 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHH
Q ss_conf 99999999986172001131023301103431125652147776520000267726995158357765258862000103
Q gi|254780409|r 66 ELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYAL 145 (310)
Q Consensus 66 eLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~ 145 (310)
..+-++..+|.. ...=+=.|+| .++=......-+++....+|+|.++..||--.. .
T Consensus 72 ~~~~~~~~~r~~----~~~pivlM~Y------~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE--------------~ 127 (257)
T PRK13124 72 KAMELVGKMRKK----VTIPIVYFTY------YNPVLQYGLEKFFALARENGIDGLLIPDLPLEE--------------S 127 (257)
T ss_pred HHHHHHHHHHCC----CCCCEEEEEH------HHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH--------------H
T ss_conf 999999985244----7888899750------078987579999999997599847778999799--------------9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHH
Q ss_conf 77778765305855518851665635789999997099799983267676321000024545574289952132033668
Q gi|254780409|r 146 PILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTL 225 (310)
Q Consensus 146 ~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi 225 (310)
..+.+..+ +++.+.+.+++| . .-+|.+.+++.-. +|.|+--..--+|. .--+ ...+
T Consensus 128 ~~~~~~~~-~~gl~~I~lvaP-T-s~~Ri~~i~~~s~-gFiY~vs~~GvTG~-------------~~~~-------~~~~ 183 (257)
T PRK13124 128 GELQEICD-KYGIYLIPLVAP-T-SKERIKKIAEQAE-GFVYCVSSLGVTGV-------------REEI-------ETDL 183 (257)
T ss_pred HHHHHHHH-HCCCCEEEEECC-C-CHHHHHHHHHCCC-CCEEEEECCCCCCC-------------CCCC-------HHHH
T ss_conf 99999998-668735788479-9-6799999985489-83899624666787-------------6556-------0889
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8898987526875217872055557168988863699899981788
Q gi|254780409|r 226 CGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 226 ~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
....+.+|+.. ++-+++=.|+=+..-.+.+.. ..|-+|+=-.+
T Consensus 184 ~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~-~ADGvIVGSai 226 (257)
T PRK13124 184 EEFIRTVKQYS--NVPVAVGFGISTPEQVQKMKE-IADGVVVGSAL 226 (257)
T ss_pred HHHHHHHHHCC--CCCEEEEECCCCHHHHHHHHH-HCCEEEECHHH
T ss_conf 99999998617--998389844699999999980-19999982899
No 284
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=30.91 E-value=39 Score=14.62 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECC-CCCCCCCEEE-CCCCCCCCCEEEEECHH
Q ss_conf 0377778765305855518851665---63578999999709979998326-7676321000-02454557428995213
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKR-REHPGKIEVM-NIIGKVEGKDCILIDDI 218 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~-R~~~~~v~~~-~~~gdV~gr~vIIVDDi 218 (310)
+..-||.++++. ...+++.|=|. ||++=-+.+++++|+++.--... -|.+- |--- --.+.=+|-|++|+
T Consensus 98 TIaKLA~~l~~~--Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAa-V~fDAi~~Ak~~niDvvli--- 171 (284)
T TIGR00064 98 TIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAA-VIFDAIQAAKARNIDVVLI--- 171 (284)
T ss_pred HHHHHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHH-HHHHHHHHHHHCCCCEEEE---
T ss_conf 288999999874--9908998275247999999999898838755407889887178-9999899998749978997---
Q ss_pred HCCHHHHHHHHHHHH
Q ss_conf 203366888989875
Q gi|254780409|r 219 VDTGGTLCGAADALY 233 (310)
Q Consensus 219 i~TGgTi~~aa~~Lk 233 (310)
||.|-|-.=.+...
T Consensus 172 -DTAGRLqnk~NLm~ 185 (284)
T TIGR00064 172 -DTAGRLQNKVNLMD 185 (284)
T ss_pred -ECCCCCCCCHHHHH
T ss_conf -34754546620399
No 285
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.58 E-value=40 Score=14.59 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=21.7
Q ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHC
Q ss_conf 30110343112565214777652000026772699515835776525
Q gi|254780409|r 89 FGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFF 135 (310)
Q Consensus 89 ~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F 135 (310)
|.-.-.+|....--+ |+-=+.+.+..-|+.+|+.+|.-..|+.--+
T Consensus 74 F~l~~k~kv~LDiGs-STGGFTd~lLq~gAk~VyavDVG~~Ql~~kL 119 (245)
T COG1189 74 FELDVKGKVVLDIGS-STGGFTDVLLQRGAKHVYAVDVGYGQLHWKL 119 (245)
T ss_pred CCCCCCCCEEEEECC-CCCCHHHHHHHCCCCEEEEEECCCCCCCHHH
T ss_conf 486889978998267-8762999998758747999970377437867
No 286
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=30.56 E-value=40 Score=14.59 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC--CEEEEEECCC---CCHHHHHHHHHCCCCEEEECCCC--CC-----
Q ss_conf 455742899521320336688898987526875--2178720555---57168988863699899981788--78-----
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGAL--SVTAYITHGV---LSSSSIERIEKSKMKELVITDSI--QP----- 273 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~--~V~~~~THgi---fs~~a~e~l~~s~i~~iv~TnTi--~~----- 273 (310)
+++|+.+++.- ....--...+.|++.|+. ++.+|-|... ......+.+....++-|+.|-+- ..
T Consensus 123 ~~~~~~vL~~~----g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~~d~i~ftS~~~v~~~~~~~ 198 (252)
T PRK05928 123 NLPGKRVLYLR----GNGGRPLLGDFLQERGADVDECEVYERKPPKLEGAEELIEELQTGEVDAIIFTSPSMVRAFLSLA 198 (252)
T ss_pred CCCCCEEEEEE----CCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHH
T ss_conf 77898799981----67666578999997798479998657637888827999999862898799990999999999986
Q ss_pred --CHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf --434740798599811799999999871
Q gi|254780409|r 274 --TDLVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 274 --~~~~~~~~ki~visva~llA~aI~~i~ 300 (310)
........+..++.++|-.|++++...
T Consensus 199 ~~~~~~~~~~~~~iv~ig~~ta~~~~~~G 227 (252)
T PRK05928 199 PELYRRHWLLRCRAVAIGKRTAEALKELG 227 (252)
T ss_pred HHHCCHHHHHCCEEEEECHHHHHHHHHCC
T ss_conf 64030256518879998999999999869
No 287
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=30.51 E-value=40 Score=14.58 Aligned_cols=63 Identities=11% Similarity=0.196 Sum_probs=43.2
Q ss_pred CCCEEEEECHHHCCHHHHHH-HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 57428995213203366888-98987526875217872055557168988863699899981788
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCG-AADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~-aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
.|-+||.+-=.-.+=.|++- .++.||+.|...|.++| -|+....-.+.|.+.|+..|+..-|.
T Consensus 632 ~dvhvigisslaa~h~tLVP~l~~~Lk~~g~~di~Vvv-GGvIP~~D~~~L~~~GV~~if~Pgt~ 695 (715)
T PRK09426 632 NDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVV-GGVIPPQDYDFLYEAGVAAIFGPGTV 695 (715)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 59999998233454421279999999964998867998-38688799999997697778589982
No 288
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=30.50 E-value=40 Score=14.58 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=12.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf 52178720555571689888636998999
Q gi|254780409|r 238 LSVTAYITHGVLSSSSIERIEKSKMKELV 266 (310)
Q Consensus 238 ~~V~~~~THgifs~~a~e~l~~s~i~~iv 266 (310)
+.|+++|.+|.=|..|.+.|.+.|+++|+
T Consensus 62 k~ivvyC~~G~RS~~Aa~~L~~~Gf~~V~ 90 (101)
T cd01518 62 KKVLMYCTGGIRCEKASAYLKERGFKNVY 90 (101)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 76999859982799999999984987068
No 289
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.35 E-value=40 Score=14.56 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=33.2
Q ss_pred CCEEEEECHHHCCHHHH----HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 74289952132033668----88989875268752178720555571689888636998999817887
Q gi|254780409|r 209 GKDCILIDDIVDTGGTL----CGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQ 272 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi----~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~ 272 (310)
|-.-||+-|+=.- ||+ .+..+.+.+. .++-+++.=|+=+-+-+++|.+.+++.+++--.++
T Consensus 161 g~~eii~tdI~~d-Gt~~G~d~~~~~~i~~~--~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al~ 225 (240)
T PRK13585 161 GAGSILFTNVDVE-GLLQGVNPEPVRELVDS--VDIPVIASGGVTSLDDVKALKEAGAAGVVVGSALY 225 (240)
T ss_pred CCCEEEEEEECCH-HHHCCCCHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 8735898642332-23257898999999986--89999998899999999999978997899876876
No 290
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=30.32 E-value=40 Score=14.56 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHEECCCCEEEEECCCC
Q ss_conf 6521477765200002677269951583
Q gi|254780409|r 101 RTPISAKLVANLITQAGADRVIMLDLHA 128 (310)
Q Consensus 101 ~e~isak~~a~ll~~~G~d~vit~DlH~ 128 (310)
+.|+ .+|+.++..|+|.+..+|+-.
T Consensus 29 ~dP~---~~A~~~~~~Ga~~lhvvDLd~ 53 (241)
T PRK00748 29 DDPL---AQAQAWQDQGAEWLHLVDLDG 53 (241)
T ss_pred CCHH---HHHHHHHHCCCCEEEEEECCC
T ss_conf 8999---999999987999899997854
No 291
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=30.23 E-value=34 Score=15.05 Aligned_cols=10 Identities=50% Similarity=0.873 Sum_probs=4.5
Q ss_pred CEEEEECCCC
Q ss_conf 5188516656
Q gi|254780409|r 160 NLMVVSPDVG 169 (310)
Q Consensus 160 ~~vVVaPD~G 169 (310)
++++|+...|
T Consensus 118 ~~ViVSnEVG 127 (169)
T cd00544 118 TLILVSNEVG 127 (169)
T ss_pred CEEEEECCCC
T ss_conf 7999965877
No 292
>TIGR01530 nadN NAD nucleotidase; InterPro: IPR006420 This family describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5-nucleotidases and has NMN 5-nucleotidase activity for NMN, AMP, etc.; GO: 0008253 5'-nucleotidase activity.
Probab=30.16 E-value=40 Score=14.54 Aligned_cols=149 Identities=23% Similarity=0.243 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCC---CCCEECC-HHHHHHHHHHHHCCCCCEEE---EECCCCHH
Q ss_conf 25652147776520000267726995158357765258---8620001-03777787653058555188---51665635
Q gi|254780409|r 99 SPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFD---IPTDNLY-ALPILERDIKERNDISNLMV---VSPDVGGV 171 (310)
Q Consensus 99 ~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~---ip~~nl~-~~~~l~~~l~~~~~~~~~vV---VaPD~G~~ 171 (310)
..|.+++.-++..|+.-. +|.++. +..--.||. -.+|+=. +...|.+|| +=||+ |=||+.+.
T Consensus 55 HAGDA~~GTLY~TLF~G~-ADA~~M----N~~~F~yFTLGNHEFD~GNEGL~~lL~~L------~~PVLSANV~P~~~S~ 123 (550)
T TIGR01530 55 HAGDALIGTLYFTLFRGR-ADAVLM----NAANFDYFTLGNHEFDAGNEGLKKLLEYL------KVPVLSANVVPDKASI 123 (550)
T ss_pred ECCHHHHHHHHHHHCCCC-HHHHHH----CCCCCCEEECCCCCCCCCCHHHHHHHHHH------CCCEEEECCCCCCCCH
T ss_conf 110357888887631774-212200----04796503247623355455899864441------5763553257772001
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-------CCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 7899999970997999832676763210000-------245455742899521320336688898987526875217872
Q gi|254780409|r 172 VRARALAKRLGCLLAIVDKRREHPGKIEVMN-------IIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 172 ~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~-------~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
- -.+=.|++++. |+. .++.+.. +...=-|||+=-+|.| .|...++..|+++|-.+|++ .
T Consensus 124 L------~~~WKP~~I~~--~~G-E~I~~IGLDTV~KTV~SSSPGKD~~F~DEI----~~~~~~~~~l~QQG~NKIIL-L 189 (550)
T TIGR01530 124 L------YNKWKPYDIVE--VDG-EKIAVIGLDTVKKTVESSSPGKDVKFIDEI----EAVRIAAVELKQQGVNKIIL-L 189 (550)
T ss_pred H------HCCCCCCCEEE--ECC-CEEEEEEECCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHCCCCEEEE-E
T ss_conf 1------02578510035--378-589998303432102358778865156578----99999999876378434665-3
Q ss_pred ECCCCCHHHHHHHH-HCCCCEEEECCCCCC
Q ss_conf 05555716898886-369989998178878
Q gi|254780409|r 245 THGVLSSSSIERIE-KSKMKELVITDSIQP 273 (310)
Q Consensus 245 THgifs~~a~e~l~-~s~i~~iv~TnTi~~ 273 (310)
+|+=|-.|+ |--+ -++||=||+=||.+-
T Consensus 190 SHAG~EKN~-EIAQ~~~~IDVIV~GD~HYL 218 (550)
T TIGR01530 190 SHAGFEKNI-EIAQKVSDIDVIVSGDSHYL 218 (550)
T ss_pred ECCCCCCCC-HHHCCCCCEEEEEECCEEEE
T ss_conf 117862240-20014266007985770245
No 293
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=29.97 E-value=41 Score=14.52 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=79.8
Q ss_pred ECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHH-HHHCCCCCHHHCCCCC--CCCCCHHHHHHHHHHEECC
Q ss_conf 567868970899859788804679999999999986172001-1310233011034311--2565214777652000026
Q gi|254780409|r 41 IGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRI-TGVIPYFGYCRQDRKP--SPRTPISAKLVANLITQAG 117 (310)
Q Consensus 41 i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~i-t~ViPY~~YaRqDr~~--~~~e~isak~~a~ll~~~G 117 (310)
++... ...|+.|..+-.- |+=..-++-.|++.+-.... ++|+-+=|+-|.=-.- .+..-.+.+.=+++|+..|
T Consensus 10 ~~~~~-~~~~l~IG~FDGv---HlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g 85 (304)
T COG0196 10 IPEDL-RGCVLTIGNFDGV---HLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG 85 (304)
T ss_pred CCCCC-CCCEEEEECCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 87445-7858999747761---5669999999999998728966999936997887087777200379899999998669
Q ss_pred CCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECC-------CCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 77269951583577652588620001037777876530585551885166-------56357899999970997999832
Q gi|254780409|r 118 ADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPD-------VGGVVRARALAKRLGCLLAIVDK 190 (310)
Q Consensus 118 ~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD-------~G~~~ra~~~a~~L~~~~~~~~K 190 (310)
+|.++.++- +..+-++++.+-+..++ +... ..-+||+-| .|+...-+.+... |.....+.+
T Consensus 86 vd~~~v~~F---------~~~fa~ls~~~Fv~~lv-~~l~-~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~ 153 (304)
T COG0196 86 VDALVVLDF---------DLEFANLSAEEFVELLV-EKLN-VKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPK 153 (304)
T ss_pred CCEEEEEEC---------CHHHHHCCHHHHHHHHH-HCCC-CCEEEEECCCCCCCCCCCCHHHHHHHCCC-CCEEEEECC
T ss_conf 968999967---------86576399789999998-4458-72899933641688888989999973557-853999454
Q ss_pred CCCCC
Q ss_conf 67676
Q gi|254780409|r 191 RREHP 195 (310)
Q Consensus 191 ~R~~~ 195 (310)
.+...
T Consensus 154 ~~~~~ 158 (304)
T COG0196 154 INEEG 158 (304)
T ss_pred EECCC
T ss_conf 72279
No 294
>PRK08105 flavodoxin; Provisional
Probab=29.95 E-value=41 Score=14.52 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=65.0
Q ss_pred EEEECC---CCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 899768---9999999999995891044489986997078885678689708998597888--04679999999999986
Q gi|254780409|r 2 KIFAGN---SNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCP--ANDYLMELLIMIDAVRR 76 (310)
Q Consensus 2 ~i~~g~---~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~--~nd~lmeLl~~~~a~k~ 76 (310)
.|+.|| +++.+|+++++.|...=.++.+ +...|.... ..-..+-++|+.||+.. .-|+..+++ +.++.
T Consensus 5 ~IlygS~TGnae~~A~~la~~l~~~g~~~~v--~~~~~~~~~--~~~~~~~vliv~ST~G~Gd~Pdn~~~f~---~~l~~ 77 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTL--FEDPELSDW--QPYQDELLLVVTSTTGQGDLPDSIVPLF---QGLKD 77 (149)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCEEE--ECHHHCCCH--HCCCCCEEEEEECCCCCCCCCHHHHHHH---HHHHH
T ss_conf 9999888327999999999999967994399--521104501--0356877999988899997976599999---99984
Q ss_pred CCCCHHHHHCCCCCHH---HCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHH
Q ss_conf 1720011310233011---0343112565214777652000026772699515835776525886200010377778765
Q gi|254780409|r 77 SSARRITGVIPYFGYC---RQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIK 153 (310)
Q Consensus 77 ~~A~~it~ViPY~~Ya---RqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~ 153 (310)
.. .. +.-+-|+ ==|+-. +.=.-.++.+-+.|+..|+.|+.-.=.+..+ +...+.....+|+.
T Consensus 78 ~~-~~----L~~l~yaVfGLGDs~Y-~~Fc~a~~~ld~~L~~lGA~ri~~~~~~D~~---------~~~~~e~~~~~W~~ 142 (149)
T PRK08105 78 TA-PY----QPNLRYGVIALGDSSY-DNFCGAGRQFDALLQELGAKRVGERLEIDAC---------ETMEPEVEANPWLE 142 (149)
T ss_pred CC-CC----CCCCEEEEEEECCCCH-HHHHHHHHHHHHHHHHCCCEEEECCEEEECC---------CCCCCHHHHHHHHH
T ss_conf 38-44----4698799997457888-8998999999999998699690766866568---------89881788999999
Q ss_pred H
Q ss_conf 3
Q gi|254780409|r 154 E 154 (310)
Q Consensus 154 ~ 154 (310)
+
T Consensus 143 ~ 143 (149)
T PRK08105 143 Q 143 (149)
T ss_pred H
T ss_conf 9
No 295
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=29.84 E-value=41 Score=14.51 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHCCCCHHH--HHCCCC--------CHHHCCC------CCCCCCCHHHHHHHHHHEECCCCEEEEECCC
Q ss_conf 99999999999861720011--310233--------0110343------1125652147776520000267726995158
Q gi|254780409|r 64 LMELLIMIDAVRRSSARRIT--GVIPYF--------GYCRQDR------KPSPRTPISAKLVANLITQAGADRVIMLDLH 127 (310)
Q Consensus 64 lmeLl~~~~a~k~~~A~~it--~ViPY~--------~YaRqDr------~~~~~e~isak~~a~ll~~~G~d~vit~DlH 127 (310)
.=|+..++.++.+.|.++|- -=-|-+ ...++-- .+..| +-..-.|+-|..+|.|+| .+-+|
T Consensus 47 ~eEi~~l~~~~~~~Gi~kvRlTGGEPLlR~dl~~li~~l~~~~gi~~islTTNG--~lL~~~a~~Lk~aGL~rv-NISLD 123 (329)
T PRK13361 47 LEELAWLAQAFTELGVRKIRLTGGEPLVRTGCDQLVARLGKLPGLEELSMTTNG--SRLARFAAELADAGLKRL-NISLD 123 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCH--HHHHHHHHHHHHCCCCEE-EEECC
T ss_conf 999999999999729528996278822356889999998617997718996647--768999999997799869-97357
Q ss_pred CHHHHHHCCC-CCEECCH-HHHHHHHHHHHCC-C-CCEEEE-ECCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3577652588-6200010-3777787653058-5-551885-1665635789999997099799983
Q gi|254780409|r 128 AGQVQGFFDI-PTDNLYA-LPILERDIKERND-I-SNLMVV-SPDVGGVVRARALAKRLGCLLAIVD 189 (310)
Q Consensus 128 ~~~~~~~F~i-p~~nl~~-~~~l~~~l~~~~~-~-~~~vVV-aPD~G~~~ra~~~a~~L~~~~~~~~ 189 (310)
+-.-+-|..| ..+.+.. ..-+-..+..... . =|.|++ +-+..-+..--.|+...++.+-+++
T Consensus 124 sLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~~VKiN~V~lrg~NddEi~~l~~~~~~~~~~vRFIE 190 (329)
T PRK13361 124 TLNPDLFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFIE 190 (329)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7999999977289976999999999997799738899998368788899999999974898369887
No 296
>PRK13115 consensus
Probab=29.44 E-value=42 Score=14.46 Aligned_cols=222 Identities=12% Similarity=0.134 Sum_probs=108.7
Q ss_pred EEEEEEEECCCCEEEEEECCCC--CCCEEEEECC-CCCCC----------------HHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 0444899869970788856786--8970899859-78880----------------467999999999998617200113
Q gi|254780409|r 24 LGKASVTYFSDREVFVEIGENV--RGEDVFIVQS-TSCPA----------------NDYLMELLIMIDAVRRSSARRITG 84 (310)
Q Consensus 24 l~~~~~~~F~dGE~~v~i~~~v--rg~dV~ivqs-~~~~~----------------nd~lmeLl~~~~a~k~~~A~~it~ 84 (310)
+.+-.+-=|||=|...++...+ .|-|++=++= ++.|+ +-++-..|-++...++. .+-+
T Consensus 26 lI~yitaG~P~~e~t~~~i~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~f~~v~~~~~~---~~Pi 102 (269)
T PRK13115 26 LIGYLPAGFPDVDTSIAAMTALVESGCDIVEVGLPYSDPVMDGPVIQAATEAALRGGVRVRDVFRAVEAISAA---GGRA 102 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC---CCCE
T ss_conf 8878527389989999999999966999999799988856668999999999997799599999999984157---9988
Q ss_pred HCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 10233011034311256521477765200002677269951583577652588620001037777876530585551885
Q gi|254780409|r 85 VIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVV 164 (310)
Q Consensus 85 ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVV 164 (310)
| .|+| .++=-.....-+++.+..+|+|.++..||--.. ...+.+.++ +++.+.+-++
T Consensus 103 v--lM~Y------~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE--------------~~~~~~~~~-~~gi~~I~Lv 159 (269)
T PRK13115 103 L--VMTY------WNPVLRYGVDRFARDLAAAGGAGLITPDLIPDE--------------AGEWLAASE-RHGLDRIFLV 159 (269)
T ss_pred E--EHHH------HHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHH--------------HHHHHHHHH-HCCEEEEEEE
T ss_conf 8--5475------489987369999999997399807647899789--------------999999998-6581289985
Q ss_pred ECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 16656357899999970997999832676763210000245455742899521320336688898987526875217872
Q gi|254780409|r 165 SPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 165 aPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
+|.. .-+|.+.+++.-. .|.|+--+.--+|.-. .. -+ .+..-.+.+|+.. ++-+++
T Consensus 160 aPtt-~~eRi~~i~~~a~-GFIY~Vs~~GvTG~~~--~~-----------~~-------~~~~~i~~ik~~t--~~Pv~v 215 (269)
T PRK13115 160 APSS-TPERLAETVEASR-GFVYAASTMGVTGARD--AV-----------SS-------AAPELVARVRAAS--DIPVCV 215 (269)
T ss_pred CCCC-CHHHHHHHHHCCC-CCEEEEECCCCCCCCC--CC-----------CH-------HHHHHHHHHHHHC--CCCCEE
T ss_conf 8999-8899999984488-8089975454567764--44-----------17-------7999999999717--998179
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 055557168988863699899981788784347407985998117999999998
Q gi|254780409|r 245 THGVLSSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINR 298 (310)
Q Consensus 245 THgifs~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~ 298 (310)
=.|+=+..-.+.+.+ ..|-+|+--.+=. .....+.=.+.....-|++++++
T Consensus 216 GFGIs~~e~~~~~~~-~aDGvIVGSa~V~--~i~~~g~~~v~~~~~el~~~~k~ 266 (269)
T PRK13115 216 GLGVSSAAQAAEIAG-YADGVIVGSALVS--ALLDGGLPAVRALTEELAAGVRR 266 (269)
T ss_pred ECCCCCHHHHHHHHH-HCCEEEECHHHHH--HHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 727899999999980-2999998689999--99975979999999999999998
No 297
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=29.31 E-value=42 Score=14.45 Aligned_cols=33 Identities=24% Similarity=0.135 Sum_probs=25.5
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 557428995213203366888989875268752178
Q gi|254780409|r 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 (310)
Q Consensus 207 V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~ 242 (310)
-+++.+|+++ .+|.....++..|++.|-++|+.
T Consensus 54 ~~~~~vi~yc---~~g~~s~~~~~~l~~~G~~~v~~ 86 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYL 86 (100)
T ss_pred CCCCEEEEEC---CCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 7998499987---99980699999999808988798
No 298
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.02 E-value=42 Score=14.42 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=16.5
Q ss_pred HHHHHHHHEECCCCEEEEECCC
Q ss_conf 7776520000267726995158
Q gi|254780409|r 106 AKLVANLITQAGADRVIMLDLH 127 (310)
Q Consensus 106 ak~~a~ll~~~G~d~vit~DlH 127 (310)
...+|..|..+|+-++..+|--
T Consensus 150 Gs~~a~yLA~aGVG~i~lvD~D 171 (379)
T PRK08762 150 GSPAAFYLAAAGVGHLRIADHD 171 (379)
T ss_pred HHHHHHHHHHHCCCEEEEEECC
T ss_conf 7999999998379758976288
No 299
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.86 E-value=43 Score=14.40 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECC-CCCCCCCEEEEECHHH
Q ss_conf 0377778765305855518851665---63578999999709979998326767632100002-4545574289952132
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNI-IGKVEGKDCILIDDIV 219 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~-~gdV~gr~vIIVDDii 219 (310)
...-|+.|++++ ...+++.|-|. ||+.--+.+++++|+++.--..-.+.+ -+---.+ -..-+|.|++|+|
T Consensus 155 TIaKLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA-aVafDAi~~Akar~~DvvliD--- 228 (340)
T COG0552 155 TIAKLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA-AVAFDAIQAAKARGIDVVLID--- 228 (340)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCH-HHHHHHHHHHHHCCCCEEEEE---
T ss_conf 799999999978--98699982334789999999999999599278259999808-999999999997699999996---
Q ss_pred CCHHHHHHHHHH---HHHCC--CCCEE-------EEEECCCCCHHHHHHH---HH-CCCCEEEECCCCCCCHHHHCCCCE
Q ss_conf 033668889898---75268--75217-------8720555571689888---63-699899981788784347407985
Q gi|254780409|r 220 DTGGTLCGAADA---LYEQG--ALSVT-------AYITHGVLSSSSIERI---EK-SKMKELVITDSIQPTDLVKSSAKI 283 (310)
Q Consensus 220 ~TGgTi~~aa~~---Lk~~G--A~~V~-------~~~THgifs~~a~e~l---~~-s~i~~iv~TnTi~~~~~~~~~~ki 283 (310)
|.|-+-.-.+. |++-. .++.. ..+--+..-.+|++.- ++ .+++.+|.|-- ..+. .-=
T Consensus 229 -TAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKl-DgtA-----KGG 301 (340)
T COG0552 229 -TAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKL-DGTA-----KGG 301 (340)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEC-CCCC-----CCC
T ss_conf -755445736689999999998464568998428999775647568999999987528866999702-4677-----762
Q ss_pred EEEECHHHHHHHHHHHHCCCCCCH
Q ss_conf 998117999999998718887313
Q gi|254780409|r 284 RILTIAQLMGEAINRTFEERSISS 307 (310)
Q Consensus 284 ~visva~llA~aI~~i~~~~Svs~ 307 (310)
.+++++..+---|+-+--||.+..
T Consensus 302 ~il~I~~~l~~PI~fiGvGE~~~D 325 (340)
T COG0552 302 IILSIAYELGIPIKFIGVGEGYDD 325 (340)
T ss_pred EEEEHHHHHCCCEEEEECCCCHHH
T ss_conf 435088886999799857888443
No 300
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=28.83 E-value=19 Score=16.69 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=26.3
Q ss_pred HHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEE
Q ss_conf 3102330110343112565214777652000026772699
Q gi|254780409|r 84 GVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIM 123 (310)
Q Consensus 84 ~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit 123 (310)
..-+-++|+|+||..+-| -..-+|++|..+|.=-+++
T Consensus 65 gL~~dLgFs~edR~eniR---RvaevAkll~daG~iviva 101 (197)
T COG0529 65 GLNRDLGFSREDRIENIR---RVAEVAKLLADAGLIVIVA 101 (197)
T ss_pred CCCCCCCCCHHHHHHHHH---HHHHHHHHHHHCCEEEEEE
T ss_conf 005788978678999999---9999999998789089997
No 301
>PRK05568 flavodoxin; Provisional
Probab=28.51 E-value=43 Score=14.36 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHH---HHHHHHHHHHHC-CCCHHH
Q ss_conf 9999999999995891044489986997078885678689708998597888046799---999999999861-720011
Q gi|254780409|r 8 SNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLM---ELLIMIDAVRRS-SARRIT 83 (310)
Q Consensus 8 ~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lm---eLl~~~~a~k~~-~A~~it 83 (310)
+.+.+|+.|++-+.-.=.++++....+-. .+.+...|.+++.|-.- |+..+ ++..+.+.++.. .-|. .
T Consensus 14 nTe~mA~~Iaegl~~~Gv~V~~~~~~~~~-----~~di~~~d~i~~GspT~--~~~~~~~~~~~~~~~~~~~~~~gK~-~ 85 (142)
T PRK05568 14 NTEAMANLIAEGAKENGLEVKLLNVSEAS-----VDDVENADVVALGSPAM--GCEVLEEGEMEPFVEEISGLVKGKK-T 85 (142)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCC-----HHHHHHCCEEEEECCCC--CCCCCCHHHHHHHHHHHHHHCCCCE-E
T ss_conf 49999999999998669839999800499-----88997399689947764--8766773667999999886659998-9
Q ss_pred HHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCC
Q ss_conf 310233011034311256521477765200002677
Q gi|254780409|r 84 GVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGAD 119 (310)
Q Consensus 84 ~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d 119 (310)
++.--|++ ..|+. .+.+.+.|+.+|++
T Consensus 86 a~FGSyGW-------g~Ge~--v~~~~e~l~~~g~~ 112 (142)
T PRK05568 86 LLFGSYGW-------GTGEW--MEDWKERMEGYGAN 112 (142)
T ss_pred EEEEECCC-------CCCHH--HHHHHHHHHHCCCE
T ss_conf 99994348-------98739--99999999976997
No 302
>PRK08507 prephenate dehydrogenase; Validated
Probab=28.36 E-value=43 Score=14.34 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=39.7
Q ss_pred EEEECCCCHHHHH--HHHHHHCCCCEEEEE----CCCCCCCCCEEECCCCC-CCCCEEEEECHHHCCHHHHHHHHHHHHH
Q ss_conf 8851665635789--999997099799983----26767632100002454-5574289952132033668889898752
Q gi|254780409|r 162 MVVSPDVGGVVRA--RALAKRLGCLLAIVD----KRREHPGKIEVMNIIGK-VEGKDCILIDDIVDTGGTLCGAADALYE 234 (310)
Q Consensus 162 vVVaPD~G~~~ra--~~~a~~L~~~~~~~~----K~R~~~~~v~~~~~~gd-V~gr~vIIVDDii~TGgTi~~aa~~Lk~ 234 (310)
.+|. |.|++|.. +.+.+.+...|.-.| .++.+.. .-..+ .+|+.+|+...--.....+....+..+.
T Consensus 85 ~iit-Dv~SvK~~i~~~~~~~~~~~fVg~HPmAGsE~sG~~-----~a~~~LF~~~~~il~p~~~~~~~~~~~~~~l~~~ 158 (275)
T PRK08507 85 TTII-DLGSTKAKIIESIPKSIRKNFIAAHPMTGTEFSGPK-----AAFKGLYKGAVVVLCDLEKSGEKHQERAKEIFSG 158 (275)
T ss_pred CEEE-ECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-----HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8898-343128999999986256884434997888754454-----4107785398599968888979999999999998
Q ss_pred CCCCCEE
Q ss_conf 6875217
Q gi|254780409|r 235 QGALSVT 241 (310)
Q Consensus 235 ~GA~~V~ 241 (310)
.||+-+.
T Consensus 159 lGa~~~~ 165 (275)
T PRK08507 159 IGMKIVF 165 (275)
T ss_pred CCCEEEE
T ss_conf 1997887
No 303
>pfam02602 HEM4 Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyses the reaction: Hydroxymethylbilane <= uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.
Probab=28.31 E-value=43 Score=14.34 Aligned_cols=91 Identities=21% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCC--CCEEEEEECCC--CCHHHHHHHHHCCCCEEEECCCCCCCH------
Q ss_conf 45574289952132033668889898752687--52178720555--571689888636998999817887843------
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGA--LSVTAYITHGV--LSSSSIERIEKSKMKELVITDSIQPTD------ 275 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA--~~V~~~~THgi--fs~~a~e~l~~s~i~~iv~TnTi~~~~------ 275 (310)
..+|+.++++ ...+.--...+.|++.|+ .++.+|-+... ......+.+....++-|+.|..-.-..
T Consensus 111 ~~~~~~il~~----~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~i~ftS~~~v~~f~~~~~ 186 (229)
T pfam02602 111 LLAGKRVLLL----RGNLGRDDLAEALREAGAKVDEVVVYRTVPPAELPEELRELLRAGEIDAVVFTSPSTVRSFLELLP 186 (229)
T ss_pred CCCCCEEEEE----CCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
T ss_conf 2689869997----277773678999997798678998888636987769999999828998999879999999999877
Q ss_pred -HHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf -4740798599811799999999871
Q gi|254780409|r 276 -LVKSSAKIRILTIAQLMGEAINRTF 300 (310)
Q Consensus 276 -~~~~~~ki~visva~llA~aI~~i~ 300 (310)
......+..++.++|..|+++++.-
T Consensus 187 ~~~~~~~~~~v~aiG~~ta~~l~~~G 212 (229)
T pfam02602 187 DEGELLKGVKVAAIGPTTAEALRELG 212 (229)
T ss_pred HHHHHHHCCEEEEECHHHHHHHHHCC
T ss_conf 75555408889998999999999869
No 304
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=28.29 E-value=43 Score=14.33 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCC
Q ss_conf 689999999999995891044489986997078885678689708998597888
Q gi|254780409|r 6 GNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCP 59 (310)
Q Consensus 6 g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~ 59 (310)
|=+=.+.|++||+..+.|..++|-.+|--= -|| |+| |-|+..+
T Consensus 57 GVGKTEIARRlAKL~~aPFiKVEAtKfTEV-GYV-------Grd---VeSmvRD 99 (463)
T TIGR00390 57 GVGKTEIARRLAKLANAPFIKVEATKFTEV-GYV-------GRD---VESMVRD 99 (463)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEEEEEC-CEE-------CCC---HHHHHHH
T ss_conf 985447999999984489146664100110-214-------241---0036787
No 305
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.13 E-value=44 Score=14.31 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=23.3
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCH
Q ss_conf 7868970899859788804679999999999986172001131023301
Q gi|254780409|r 43 ENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGY 91 (310)
Q Consensus 43 ~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~Y 91 (310)
+.+.|+--++++..+.+ .-|.+-++..++++||.-+-++-|||..
T Consensus 72 e~~~gr~pvi~G~~~~~----t~~ai~~a~~a~~~Gad~~lv~~P~y~~ 116 (309)
T cd00952 72 ETVAGRVPVFVGATTLN----TRDTIARTRALLDLGADGTMLGRPMWLP 116 (309)
T ss_pred HHHCCCCEEEECCCCCH----HHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 98389850996057505----9999999999984698999988885889
No 306
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=28.11 E-value=44 Score=14.31 Aligned_cols=159 Identities=25% Similarity=0.301 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCH-HHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCC
Q ss_conf 80467999999999998617200-11310233011034311256521477765200002677269951583577652588
Q gi|254780409|r 59 PANDYLMELLIMIDAVRRSSARR-ITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDI 137 (310)
Q Consensus 59 ~~nd~lmeLl~~~~a~k~~~A~~-it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~i 137 (310)
++-|.+ -+.++-+|.++.--+. -|+|-| ..+...|+.+.+|.++ |..-++++.-..++
T Consensus 40 SvKDR~-A~~mI~~Ae~~G~l~pG~tIVE~----------TSGNTGIaLA~vaa~~---Gy~~~ivmP~~~S~------- 98 (300)
T COG0031 40 SVKDRI-ALYMIEDAEKRGLLKPGGTIVEA----------TSGNTGIALAMVAAAK---GYRLIIVMPETMSQ------- 98 (300)
T ss_pred CHHHHH-HHHHHHHHHHCCCCCCCCEEEEE----------CCCHHHHHHHHHHHHC---CCCEEEEECCCCCH-------
T ss_conf 625779-99999999984987999989970----------8972799999999981---99289995898999-------
Q ss_pred CCEECCHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHHCCCCEEEEECCCCCCCC------CEEECCCCCC
Q ss_conf 62000103777787653058555188516656----3578999999709979998326767632------1000024545
Q gi|254780409|r 138 PTDNLYALPILERDIKERNDISNLMVVSPDVG----GVVRARALAKRLGCLLAIVDKRREHPGK------IEVMNIIGKV 207 (310)
Q Consensus 138 p~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G----~~~ra~~~a~~L~~~~~~~~K~R~~~~~------v~~~~~~gdV 207 (310)
.-.+-++. + ..+++++-.+.| +.+|++.+++...-.+... .+=..+.+ ....++..+.
T Consensus 99 ---------er~~~l~a-~-GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~-~Qf~NpaN~~aH~~tT~~EI~~~~ 166 (300)
T COG0031 99 ---------ERRKLLRA-L-GAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWL-NQFENPANPEAHYETTGPEIWQQT 166 (300)
T ss_pred ---------HHHHHHHH-C-CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEECH-HHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ---------99999998-2-99899837987745999999999997498836755-343896478989761289999973
Q ss_pred CCC-EEEEECHHHCCHHHHHHHHHHHHHCCC-CCEEEEEECC--CCCHH
Q ss_conf 574-289952132033668889898752687-5217872055--55716
Q gi|254780409|r 208 EGK-DCILIDDIVDTGGTLCGAADALYEQGA-LSVTAYITHG--VLSSS 252 (310)
Q Consensus 208 ~gr-~vIIVDDii~TGgTi~~aa~~Lk~~GA-~~V~~~~THg--ifs~~ 252 (310)
+|+ |+++. -+.||||+...++.||++.. -+++++=.++ +|+++
T Consensus 167 ~~~~d~fVa--gvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G 213 (300)
T COG0031 167 DGKVDAFVA--GVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGG 213 (300)
T ss_pred CCCCCEEEE--ECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 799998999--37852658999999986289837999777888555799
No 307
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=28.06 E-value=44 Score=14.31 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=45.9
Q ss_pred EECCCCHHHHHHHHHHHCCCE-EEEEEEECC--CCEE-------EEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 976899999999999958910-444899869--9707-------888567868970899859788804679999999999
Q gi|254780409|r 4 FAGNSNRNLAQEICDYLHTSL-GKASVTYFS--DREV-------FVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDA 73 (310)
Q Consensus 4 ~~g~~~~~La~~ia~~lg~~l-~~~~~~~F~--dGE~-------~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a 73 (310)
+||+...+.++++...+..+. .......|- |||. +.+-|.|.-|+||+=+|.+.+++ .++. ++..
T Consensus 24 iSGp~a~~ia~~i~~~~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~---v~~~--iL~~ 98 (454)
T COG0486 24 ISGPDALEIAQKLFGGLKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPV---VVNL--ILEL 98 (454)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCHH---HHHH--HHHH
T ss_conf 0277499999998477777887189999898699757522537887089874666479997679899---9999--9999
Q ss_pred HHHCCC
Q ss_conf 986172
Q gi|254780409|r 74 VRRSSA 79 (310)
Q Consensus 74 ~k~~~A 79 (310)
|-+.||
T Consensus 99 ~l~~Ga 104 (454)
T COG0486 99 LLKLGA 104 (454)
T ss_pred HHHCCC
T ss_conf 997498
No 308
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=28.03 E-value=44 Score=14.30 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 35789999997099799983267676321000024545574289952132033668889898752687521787205555
Q gi|254780409|r 170 GVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVL 249 (310)
Q Consensus 170 ~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgif 249 (310)
..++++.+ ..+|++...++.-|+.. . .|. ..+..-.+..+.+.+.|. -+.++=|+=
T Consensus 118 ~~e~a~~~-~~lgv~~~i~H~~~D~~----~-------~g~---------~~~~~~~~~ik~l~~~~~---~vaVaGGI~ 173 (216)
T PRK13306 118 TWEQAQQW-RDAGIQQVIYHRSRDAE----L-------AGV---------AWGEKDLNKVKKLSDMGF---KVSVTGGIV 173 (216)
T ss_pred CHHHHHHH-HHCCCCEEEEECCHHHH----H-------CCC---------CCCHHHHHHHHHHHCCCC---EEEECCCCC
T ss_conf 78889999-97699878876032244----2-------467---------888778999999763698---299859989
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEEEEECHHHHHHHHHHH
Q ss_conf 71689888636998999817887843474079859981179999999987
Q gi|254780409|r 250 SSSSIERIEKSKMKELVITDSIQPTDLVKSSAKIRILTIAQLMGEAINRT 299 (310)
Q Consensus 250 s~~a~e~l~~s~i~~iv~TnTi~~~~~~~~~~ki~visva~llA~aI~~i 299 (310)
. +..+.+.+.+.+-+|+=-.|...+.. ...+.-|-+.|+++
T Consensus 174 ~-~~~~~~~~~~~~ivIVGraIt~a~dP--------~~aA~~i~~~I~~~ 214 (216)
T PRK13306 174 P-EDLKLFKGIPIKTFIAGRAIRGAKDP--------AEAARAFKDEIAKY 214 (216)
T ss_pred H-HHHHHHHCCCCCEEEECCCCCCCCCH--------HHHHHHHHHHHHHH
T ss_conf 8-99999862799899988523589999--------99999999999986
No 309
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=27.97 E-value=44 Score=14.30 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=62.6
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC---CCEEEECCCCCCCHHHHCCCC
Q ss_conf 45574289952132033668889898752687521787205555716898886369---989998178878434740798
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSK---MKELVITDSIQPTDLVKSSAK 282 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~---i~~iv~TnTi~~~~~~~~~~k 282 (310)
+.+||+=-++|=-|-+|== ++. +...||++|+++=+=++-...|..++...+ .-+++..+++|-.+.. ...+
T Consensus 192 d~k~kh~~viD~GCGSGIL---~IA-a~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vPe~~~~-~e~~ 266 (330)
T TIGR00406 192 DLKDKHKKVIDVGCGSGIL---SIA-ALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVPELEQP-IEGK 266 (330)
T ss_pred CCCCCCCEEEEECCCHHHH---HHH-HHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC-CCCC
T ss_conf 4777665478712671789---999-9975123112213772899999976874588645764320578753453-2256
Q ss_pred EEEEECHHHHHHHHHHHHC
Q ss_conf 5998117999999998718
Q gi|254780409|r 283 IRILTIAQLMGEAINRTFE 301 (310)
Q Consensus 283 i~visva~llA~aI~~i~~ 301 (310)
.-| =||.++|+.|++++.
T Consensus 267 ~DV-iVANiLA~vi~~L~p 284 (330)
T TIGR00406 267 ADV-IVANILAEVIKELYP 284 (330)
T ss_pred CCE-EEECCHHHHHHHHHH
T ss_conf 675-788002457876413
No 310
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=27.95 E-value=44 Score=14.29 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHEECCCCEEEEECCC--CHH------HHHHCCC-CCEECCHHHHHHHHHHHHCCCCCEEEEECCCC-HHH
Q ss_conf 2147776520000267726995158--357------7652588-62000103777787653058555188516656-357
Q gi|254780409|r 103 PISAKLVANLITQAGADRVIMLDLH--AGQ------VQGFFDI-PTDNLYALPILERDIKERNDISNLMVVSPDVG-GVV 172 (310)
Q Consensus 103 ~isak~~a~ll~~~G~d~vit~DlH--~~~------~~~~F~i-p~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G-~~~ 172 (310)
+-.+..++.+....+ |..+.+- ++. ...||+. |-+... ...+++.++ ..+++.+.++..|.. +..
T Consensus 76 S~~~~~va~v~~~~~---ip~is~~~t~~~l~~~~~~~~~~R~~~~d~~~-~~a~~~l~~-~~gw~~vail~~~~~~g~~ 150 (350)
T cd06366 76 SSVAEFVAEVANEWN---VPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQ-NPAIAALLK-KFGWRRVATIYEDDDYGSG 150 (350)
T ss_pred CHHHHHHHHHHHHCC---CEEECCCCCCCCCCCCCCCCEEEECCCCHHHH-HHHHHHHHH-HCCCCEEEEEEECCCCHHH
T ss_conf 488897888765137---12503555884102246786589816886788-999999999-7699699999976800489
Q ss_pred HHHHHH---HHCCCCEEEEECCCCCCCCCEEECCCCCC--CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899999---97099799983267676321000024545--574289952132033668889898752687521787
Q gi|254780409|r 173 RARALA---KRLGCLLAIVDKRREHPGKIEVMNIIGKV--EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 173 ra~~~a---~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
.++.+. ++.|..+.....-....+........-.+ ++-++||++=..+.+..+...++.+.=.|.+-++.+
T Consensus 151 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~d~~~~L~~ik~~~~~viv~~~~~~~a~~i~~qA~~lgm~~~~y~wi~ 226 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWIL 226 (350)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9999999999879989999974689974369999999743799889997888999999999997598778837998
No 311
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=27.76 E-value=44 Score=14.27 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=12.4
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 74289952132033668889898752687
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCGAADALYEQGA 237 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~aa~~Lk~~GA 237 (310)
+|.+++ .|.+|..-..|++.|+++|-
T Consensus 51 ~~~ivv---~C~~G~rS~~aa~~L~~~G~ 76 (90)
T cd01524 51 DKEIIV---YCAVGLRGYIAARILTQNGF 76 (90)
T ss_pred CCEEEE---ECCCCCHHHHHHHHHHHCCC
T ss_conf 870999---88998059999999998699
No 312
>PRK06444 prephenate dehydrogenase; Provisional
Probab=27.62 E-value=38 Score=14.71 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=5.1
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999958
Q gi|254780409|r 11 NLAQEICDYLH 21 (310)
Q Consensus 11 ~La~~ia~~lg 21 (310)
.|+.-.|+.|.
T Consensus 11 r~g~~~~~~~~ 21 (197)
T PRK06444 11 RLGRVLCSILD 21 (197)
T ss_pred CHHHHHHHHHC
T ss_conf 16689999970
No 313
>PRK04182 cytidylate kinase; Provisional
Probab=27.43 E-value=45 Score=14.23 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.1
Q ss_pred ECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 7689999999999995891044
Q gi|254780409|r 5 AGNSNRNLAQEICDYLHTSLGK 26 (310)
Q Consensus 5 ~g~~~~~La~~ia~~lg~~l~~ 26 (310)
+||+-..+|+.+|++||+++..
T Consensus 9 ~GSGk~tIak~LA~~lg~~~~d 30 (178)
T PRK04182 9 PGSGKTTVARLLAEKLGLKLVS 30 (178)
T ss_pred CCCCHHHHHHHHHHHHCCEEEC
T ss_conf 9888799999999995993872
No 314
>PRK10416 cell division protein FtsY; Provisional
Probab=27.12 E-value=46 Score=14.20 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECC-CCCCCCCEEEEECHHHC
Q ss_conf 377778765305855518851665---63578999999709979998326767632100002-45455742899521320
Q gi|254780409|r 145 LPILERDIKERNDISNLMVVSPDV---GGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNI-IGKVEGKDCILIDDIVD 220 (310)
Q Consensus 145 ~~~l~~~l~~~~~~~~~vVVaPD~---G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~-~gdV~gr~vIIVDDii~ 220 (310)
..-|+.|++++ ..+++++|-|. +++.--+.++++.|+++.--....+. -.+-...+ ...-+|.|++|+|
T Consensus 312 igKLA~~~~~~--gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dp-a~V~~dai~~a~~~~~DvviiD---- 384 (499)
T PRK10416 312 IGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS-ASVIFDAIQAAKARNVDVLIAD---- 384 (499)
T ss_pred HHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHHHHCCCCEEEEE----
T ss_conf 99999999977--9953788406675689999999842457369836899997-9999999999997299989985----
Q ss_pred CHHHH-------------HHHHHHHHHCCCCCEEEEEECCCCCHHHHHH---HH-HCCCCEEEECCCCCCCHHHHCCCCE
Q ss_conf 33668-------------8898987526875217872055557168988---86-3699899981788784347407985
Q gi|254780409|r 221 TGGTL-------------CGAADALYEQGALSVTAYITHGVLSSSSIER---IE-KSKMKELVITDSIQPTDLVKSSAKI 283 (310)
Q Consensus 221 TGgTi-------------~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~---l~-~s~i~~iv~TnTi~~~~~~~~~~ki 283 (310)
|.|.+ .+.++.+. .+|-.-.+.+--+..-.+|+.. +. ..+++.+|.|--=-.... =
T Consensus 385 TAGRl~~~~~LM~EL~ki~rvi~k~~-~~aP~e~lLVlDa~tGQna~~qak~F~e~~~ltGiIlTKlDGtAKG------G 457 (499)
T PRK10416 385 TAGRLQNKSHLMEELKKIVRVMKKLD-VEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKG------G 457 (499)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCC------H
T ss_conf 77643260999999999999997237-8999748999778767789999999844279975999656778852------5
Q ss_pred EEEECHHHHHHHHHHHHCCCCCCHH
Q ss_conf 9981179999999987188873130
Q gi|254780409|r 284 RILTIAQLMGEAINRTFEERSISSL 308 (310)
Q Consensus 284 ~visva~llA~aI~~i~~~~Svs~l 308 (310)
.+++++..+.--|+.|-.|+.+..|
T Consensus 458 ~~lsi~~~~~~PI~fiG~GE~idDL 482 (499)
T PRK10416 458 VIFSVADQFGIPIRYIGVGERIEDL 482 (499)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHC
T ss_conf 9999999988395998679882206
No 315
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=26.94 E-value=46 Score=14.18 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCC-HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEE
Q ss_conf 999999999861720-011310233011034311256521477765200002677269
Q gi|254780409|r 66 ELLIMIDAVRRSSAR-RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVI 122 (310)
Q Consensus 66 eLl~~~~a~k~~~A~-~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vi 122 (310)
+.+....|.+|+.-+ =+.+=|||..|.. ...-..+-..++++.+|+|-|-
T Consensus 59 ~mi~H~~aV~rg~~~~~vv~DmPf~sy~~-------s~~~A~~nA~rl~ke~GadaVK 109 (254)
T cd06557 59 EMIYHTRAVRRGAPRALVVADMPFGSYQT-------SPEQALRNAARLMKEAGADAVK 109 (254)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCC-------CHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999971187733998556654579-------9999999999999855999899
No 316
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=26.64 E-value=46 Score=14.14 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=10.0
Q ss_pred CEEEEECCCCH-----HHHHHHHHHHCC
Q ss_conf 51885166563-----578999999709
Q gi|254780409|r 160 NLMVVSPDVGG-----VVRARALAKRLG 182 (310)
Q Consensus 160 ~~vVVaPD~G~-----~~ra~~~a~~L~ 182 (310)
++++|+-..|. -+.++.|.+.+|
T Consensus 118 ~~ViVsnEVG~Givp~~~~~R~frd~lG 145 (170)
T PRK05800 118 KIILVSNEVGMGIVPEYRLGRRFRDIAG 145 (170)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7899977867778899879999999999
No 317
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.62 E-value=47 Score=14.14 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=23.6
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 574289952132033668889898752687521787
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
+++.+|++ |.+|..-..|++.|++.|-+.|+..
T Consensus 55 ~~~~ivv~---C~~G~Rs~~Aa~~L~~~G~~~V~~L 87 (96)
T cd01529 55 RATRYVLT---CDGSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCEEEEE---CCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99979998---6998469999999998589880990
No 318
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=26.46 E-value=47 Score=14.14 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=10.7
Q ss_pred ECCCCHHHHHHHHHHHCCCE
Q ss_conf 76899999999999958910
Q gi|254780409|r 5 AGNSNRNLAQEICDYLHTSL 24 (310)
Q Consensus 5 ~g~~~~~La~~ia~~lg~~l 24 (310)
+||+..-.|+.||++||+++
T Consensus 9 PGSGktTvA~~lA~~Lsl~~ 28 (173)
T TIGR02173 9 PGSGKTTVAKILAEKLSLKL 28 (173)
T ss_pred CCCCHHHHHHHHHHHCCCCE
T ss_conf 96864789999998639831
No 319
>PRK13131 consensus
Probab=26.42 E-value=47 Score=14.12 Aligned_cols=160 Identities=12% Similarity=0.179 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECC
Q ss_conf 99999999999861720011310233011034311256521477765200002677269951583577652588620001
Q gi|254780409|r 64 LMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLY 143 (310)
Q Consensus 64 lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~ 143 (310)
+.+.+.++..+|+...+--.+ .|+|. ++=-.....-+++....+|+|.++..||- .+.
T Consensus 71 ~~~~~~~~~~~r~~~~~~piv---lM~Y~------N~i~~yG~e~F~~~~~~~GvdGvIipDLP-----------~eE-- 128 (257)
T PRK13131 71 MAKNFQLLKKIRDYNHHIPIG---LLAYA------NLIFSYGVDGFYAQAKECGVDSVLIADMP-----------LIE-- 128 (257)
T ss_pred HHHHHHHHHHHHHCCCCCCEE---EECCH------HHHHHHCHHHHHHHHHHCCCCCEECCCCC-----------HHH--
T ss_conf 899999999987049998889---99276------89998579999999986599856558999-----------678--
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHH
Q ss_conf 03777787653058555188516656357899999970997999832676763210000245455742899521320336
Q gi|254780409|r 144 ALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGG 223 (310)
Q Consensus 144 ~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGg 223 (310)
...+.+..+ +++.+.+-+++|.. ..+|.+.+++.-. .|.|+--+.--+|.-. -+ -.
T Consensus 129 -~~~~~~~~~-~~~l~~I~lvaPtt-~~~Ri~~i~~~s~-GFiY~vs~~GvTG~~~-------------~~-------~~ 184 (257)
T PRK13131 129 -KELVIKSAQ-KHQIKQIFIASPNA-SVKDLEQVATHSQ-GYIYTLARSGVTGASH-------------TL-------EN 184 (257)
T ss_pred -HHHHHHHHH-HCCCCEEEEECCCC-CHHHHHHHHHCCC-CEEEEEECCCCCCCCC-------------CC-------CH
T ss_conf -899999999-77984799728999-8899999983589-7499984576779864-------------34-------07
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 688898987526875217872055557168988863699899981788
Q gi|254780409|r 224 TLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSI 271 (310)
Q Consensus 224 Ti~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi 271 (310)
.+....+.+|+.. ++-+++=.|+=+....+.+...+.|-+|+=-.+
T Consensus 185 ~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~~~~gaDGvIVGSai 230 (257)
T PRK13131 185 DASAIIKTLKTFS--PTPALLGFGISKKEHITNAKGMGADGVICGSAL 230 (257)
T ss_pred HHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 6999999999668--998799805798899999985599999987899
No 320
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=26.29 E-value=47 Score=14.10 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=27.5
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 989976899999999999958910444899869970
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDRE 36 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE 36 (310)
|+.|.+.+.++--+.|-+.||-+..=..-++-+-|=
T Consensus 3 i~~f~a~s~~ea~~kIr~~lG~~AvIls~r~i~~g~ 38 (407)
T COG1419 3 IKKFTAESMREAIEKIRKELGEDAVILSNRRIKKGG 38 (407)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCEECCCC
T ss_conf 699861689999999999878981885433634782
No 321
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=26.18 E-value=30 Score=15.42 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=13.5
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 13203366888989875268752178
Q gi|254780409|r 217 DIVDTGGTLCGAADALYEQGALSVTA 242 (310)
Q Consensus 217 Dii~TGgTi~~aa~~Lk~~GA~~V~~ 242 (310)
++.-=||-..| +++.+++||++|..
T Consensus 477 ~VKPVGGV~~K-i~AA~~AGak~ViI 501 (532)
T TIGR02902 477 LVKPVGGVVSK-IEAAKKAGAKKVII 501 (532)
T ss_pred EEEECCCCCHH-HHHHHHCCCCEEEC
T ss_conf 05201786126-89999749726534
No 322
>pfam12224 Amidoligase_2 Putative amidoligase enzyme. This family of proteins are likely to act as amidoligase enzymes Protein in this family are found in conserved gene neighborhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes).
Probab=26.13 E-value=47 Score=14.08 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=49.2
Q ss_pred EECCCCHHHHHHHHHHHCCCEEEE-----EEEECCCCEEEEEECCCCCCCE------------EEEECCCCCCCHHHHHH
Q ss_conf 976899999999999958910444-----8998699707888567868970------------89985978880467999
Q gi|254780409|r 4 FAGNSNRNLAQEICDYLHTSLGKA-----SVTYFSDREVFVEIGENVRGED------------VFIVQSTSCPANDYLME 66 (310)
Q Consensus 4 ~~g~~~~~La~~ia~~lg~~l~~~-----~~~~F~dGE~~v~i~~~vrg~d------------V~ivqs~~~~~nd~lme 66 (310)
|+|-+-+..|+.|++.+|...... .+..=..|+.++....++.+.. +=||..-. +-++.+=+
T Consensus 11 ~~gl~~~~~a~~ia~~~Gg~~~~~~~~~~~v~~~~~~~w~v~~D~si~~~~~~~~~~~~~~~p~EiVSPpl-~~~~~l~~ 89 (250)
T pfam12224 11 FTGLTRERAAEALAELLGGTVERDSYDEWSVTDTELGKWKIELDSSILKEDAEKRDLADADVPVEIVSPPL-PYSEDLEQ 89 (250)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEECCCC-CCHHHHHH
T ss_conf 47999999999999985980564478647885488997899986430255330123102578746888986-77067899
Q ss_pred HHHHHHHHHHCCCCHHH
Q ss_conf 99999999861720011
Q gi|254780409|r 67 LLIMIDAVRRSSARRIT 83 (310)
Q Consensus 67 Ll~~~~a~k~~~A~~it 83 (310)
|--+++++|++||+..+
T Consensus 90 l~~l~~~Lr~~ga~~tn 106 (250)
T pfam12224 90 LQELVRALRRAGAKGTN 106 (250)
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 99999999982883467
No 323
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=26.07 E-value=48 Score=14.08 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.6
Q ss_pred ECCCCHHHHHHHHHHHCCCEE
Q ss_conf 768999999999999589104
Q gi|254780409|r 5 AGNSNRNLAQEICDYLHTSLG 25 (310)
Q Consensus 5 ~g~~~~~La~~ia~~lg~~l~ 25 (310)
+||+....|+.+|+++|+++.
T Consensus 9 pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 9 PGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred CCCCCHHHHHHHHHHHCCCEE
T ss_conf 999702799999998297156
No 324
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=25.83 E-value=48 Score=14.05 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHC-CCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHH----HCCCCCE
Q ss_conf 999999999861-72001131023301103431125652147776520000267726995158357765----2588620
Q gi|254780409|r 66 ELLIMIDAVRRS-SARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQG----FFDIPTD 140 (310)
Q Consensus 66 eLl~~~~a~k~~-~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~----~F~ip~~ 140 (310)
..+-+++.|++. +|| |. -.|.-+-|.+|.+=+-. ++-..-++ ++|-|| +=+.=-.-+| .|+-+
T Consensus 12 R~lE~I~~L~~~P~Ak-~~----l~Gf~qL~~gF~G~~~~--~~~~~~~~--~~Dvvi-LPv~G~~~~G~v~t~f~~~-- 79 (288)
T TIGR02853 12 RQLELIRKLEELPDAK-IS----LIGFDQLEDGFTGVEKL--ELDELDLS--TLDVVI-LPVQGVSQDGKVATVFSNE-- 79 (288)
T ss_pred HHHHHHHHHHHCCCCE-EE----EECCCCCCCCCCCHHHH--CCCCCCCC--CCCEEE-ECCCCCCCCCEEEEECCCC--
T ss_conf 3788899997377978-99----96366300231330010--13424444--666788-1678859988487411587--
Q ss_pred ECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCC---------------C
Q ss_conf 0010377778765305855518851665635789999997099799983267676321000024---------------5
Q gi|254780409|r 141 NLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNII---------------G 205 (310)
Q Consensus 141 nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~---------------g 205 (310)
.+ .+=.+|+.+- ..+-++.++. +-++-+.+++..|+++.-+. +||. +-+-+.+ =
T Consensus 80 ~~---~l~~~~~~~~-~~~~~~~~Gi---sn~yL~~l~~~a~~~Li~l~-erDd---vAIYNSIPtaEGAimMA~e~td~ 148 (288)
T TIGR02853 80 KV---VLKPELLEET-KKHCTIYVGI---SNDYLEELAAEAGVKLIELF-ERDD---VAIYNSIPTAEGAIMMAIEHTDF 148 (288)
T ss_pred CE---EECHHHHHHC-CCCEEEEECC---CCHHHHHHHHHCCCCEEEEC-CCCC---EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 21---6466899520-7943899737---76589999987196024100-3575---33445875567899999724896
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCC------------CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 455742899521320336688898987526875------------21787205555716898886369989998178878
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGAL------------SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQP 273 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~------------~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~ 273 (310)
.+-|-++.++ -.=.||.|+.+.-.. .||+ ||+-.+-||+=...-.+.+.+ +| ++=||||.
T Consensus 149 TIHgS~v~Vl-GfGRtG~tiAr~f~a---LGA~V~V~AR~~~dlARI~E~g~~P~~~~~L~~~v~e--~D--IviNTiPa 220 (288)
T TIGR02853 149 TIHGSNVMVL-GFGRTGMTIARTFSA---LGARVSVGARSSADLARITEMGLEPVPLNKLEEKVAE--ID--IVINTIPA 220 (288)
T ss_pred CEECCEEEEE-CCCCHHHHHHHHHHH---CCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCC--CC--EEEECCCC
T ss_conf 2501345788-447056899999972---6980575317836789999960688271678876500--02--47706763
Q ss_pred ----CHH-HHCCCCEEEEECH
Q ss_conf ----434-7407985998117
Q gi|254780409|r 274 ----TDL-VKSSAKIRILTIA 289 (310)
Q Consensus 274 ----~~~-~~~~~ki~visva 289 (310)
.+. .+....-.+||+|
T Consensus 221 Lvlt~~~l~~lp~~AviiDLA 241 (288)
T TIGR02853 221 LVLTKDVLSKLPKHAVIIDLA 241 (288)
T ss_pred CCCCHHHHHHCCCCCEEEEEC
T ss_conf 003658995268584899732
No 325
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=25.51 E-value=49 Score=14.01 Aligned_cols=119 Identities=14% Similarity=0.067 Sum_probs=56.7
Q ss_pred EEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECC
Q ss_conf 88856786897089985978880467999999999998617200113102330110343112565214777652000026
Q gi|254780409|r 38 FVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAG 117 (310)
Q Consensus 38 ~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G 117 (310)
..|-.+-..|+.|+++.. .+|.+--- + .+..+++-.-+|.|..+-.+. .++.+--...+.....+.
T Consensus 11 llR~~~~f~~k~vL~~g~----~~D~~p~~------l---~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~ 76 (342)
T PRK09489 11 LLRHSDDFEQSRILFAGD----LQDDLPAQ------L---DAAASRVHTQQFHHWQVLSRQ-MGDNVRFSLVATAEDVAD 76 (342)
T ss_pred HHHHHHHHCCCCEEEECC----CCCCHHHH------C---CCCCCEEEHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCC
T ss_conf 985699858981899768----56303565------2---304527553163799997553-176356631357654356
Q ss_pred CCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 77269951583577652588620001037777876530585551885166563578999999709
Q gi|254780409|r 118 ADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLG 182 (310)
Q Consensus 118 ~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~ 182 (310)
+|.++..=+-+-+... ..|...+........+.||+.+.+|++-+.++-..++
T Consensus 77 ~D~~i~~~PK~K~e~~------------~~L~~l~~~l~~g~~i~vvGenk~GIks~~k~l~~~~ 129 (342)
T PRK09489 77 CDTLIYYWPKNKQEAQ------------FQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred CCEEEEECCCCHHHHH------------HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 7789998678589999------------9999999727999879999678134889999765005
No 326
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.48 E-value=29 Score=15.54 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 3668889898752687521787205555716898886369989998178
Q gi|254780409|r 222 GGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDS 270 (310)
Q Consensus 222 GgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnT 270 (310)
-.-..+.++.+..-|+..++.-||. +=+-..+++|++.-=.-++++|+
T Consensus 165 P~~~y~lAk~~~~~~~DaiFiSCTn-lRt~eii~~lE~~~G~PVvsSN~ 212 (238)
T COG3473 165 PWAVYRLAKEVFTPDADAIFISCTN-LRTFEIIEKLERDTGVPVVSSNQ 212 (238)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHHHHHHHHCCCEEECCH
T ss_conf 3899999998567777769997004-53178899999974996361458
No 327
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=25.44 E-value=49 Score=14.00 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=22.7
Q ss_pred CEEEEE--CHHHCCHH--HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 428995--21320336--688898987526875217872055557168988863
Q gi|254780409|r 210 KDCILI--DDIVDTGG--TLCGAADALYEQGALSVTAYITHGVLSSSSIERIEK 259 (310)
Q Consensus 210 r~vIIV--DDii~TGg--Ti~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~ 259 (310)
.+.+|+ .|-.--|| .-++=++.+.+.||.- +.++|+-+.+.++++.+
T Consensus 149 ~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~---if~~al~~~e~i~~f~~ 199 (289)
T COG2513 149 PDFVIIARTDALLVEGLDDAIERAQAYVEAGADA---IFPEALTDLEEIRAFAE 199 (289)
T ss_pred CCEEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCE---ECCCCCCCHHHHHHHHH
T ss_conf 8859996148777524799999999999759768---71366799999999998
No 328
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=24.93 E-value=50 Score=13.94 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=51.4
Q ss_pred HHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHH-HHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 7765200002677269951583577652588620001037-777876530-58555188516656357899999970997
Q gi|254780409|r 107 KLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALP-ILERDIKER-NDISNLMVVSPDVGGVVRARALAKRLGCL 184 (310)
Q Consensus 107 k~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~-~l~~~l~~~-~~~~~~vVVaPD~G~~~ra~~~a~~L~~~ 184 (310)
--.|+-+..-|+|-+|+=--....++..+++|+-.+.... -+.+.+..- ....+..+|+-..- .+.++.+.+.|+.+
T Consensus 22 v~~a~~~~~~g~dvIIsRGgta~~ir~~~~iPVv~I~~s~~Dil~al~~a~~~~~kiavvg~~~~-~~~~~~~~~il~~~ 100 (169)
T pfam06506 22 VEVARALVAEGVDVIISRGGTAAYLRDRLSVPVVEIKVSGFDLLRALARARRYGGRIGLVGYENI-IPGLKALSELLGLD 100 (169)
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHCCC
T ss_conf 99999999779959998965899999858998899827886999999999975897999927630-36899999996993
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780409|r 185 LAIV 188 (310)
Q Consensus 185 ~~~~ 188 (310)
+...
T Consensus 101 i~~~ 104 (169)
T pfam06506 101 IVQR 104 (169)
T ss_pred EEEE
T ss_conf 5999
No 329
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.90 E-value=50 Score=13.94 Aligned_cols=164 Identities=12% Similarity=0.154 Sum_probs=85.7
Q ss_pred HHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEE-ECCC-CHHHHHHHHHHHC---CCCEEEEECCCCCCCCCEEECCCCC
Q ss_conf 652588620001037777876530585551885-1665-6357899999970---9979998326767632100002454
Q gi|254780409|r 132 QGFFDIPTDNLYALPILERDIKERNDISNLMVV-SPDV-GGVVRARALAKRL---GCLLAIVDKRREHPGKIEVMNIIGK 206 (310)
Q Consensus 132 ~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVV-aPD~-G~~~ra~~~a~~L---~~~~~~~~K~R~~~~~v~~~~~~gd 206 (310)
..+|.....+-.-...+++|+.+....++..|+ .+|. -+...++.|.+.+ +..... .......+.......+-.
T Consensus 108 ~~~Fr~~~~~~~~~~~la~~~~~~~~~k~vai~~~~~~~yg~~~~~~f~~~~~~~gg~~v~-~~~~~~~~d~d~~~~l~~ 186 (332)
T cd06344 108 PYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVV-TPCDLSSPDFNANTAVSQ 186 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE-EEEECCCCCCCHHHHHHH
T ss_conf 7189924886899999999999854898899999478647789999999999982995999-987169899799999999
Q ss_pred C--CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCC----CHH----
Q ss_conf 5--574289952132033668889898752687521787205555716898886369989998178878----434----
Q gi|254780409|r 207 V--EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVITDSIQP----TDL---- 276 (310)
Q Consensus 207 V--~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~----~~~---- 276 (310)
+ .+-++|++ ...+.......+.+++.|. .+.++.++++.+...++.-. ...+.++.+....+ ...
T Consensus 187 i~~~~~d~i~~---~~~~~~~~~~~~~~~~~g~-~~~l~g~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~f~~~ 261 (332)
T cd06344 187 AINNGATVLVL---FPDTDTLDKALEVAKANKG-RLTLLGGDSLYTPDTLLDGG-KDLEGLVLAVPWHPLASPNSPFAKL 261 (332)
T ss_pred HHHCCCCEEEE---CCCHHHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHH-HHHCCEEEEEECCCCCCCHHHHHHH
T ss_conf 86379989999---0867889999999997699-95599458656889999767-8747859975058777503799999
Q ss_pred HHCC--CCEE-----EEECHHHHHHHHHHHHC
Q ss_conf 7407--9859-----98117999999998718
Q gi|254780409|r 277 VKSS--AKIR-----ILTIAQLMGEAINRTFE 301 (310)
Q Consensus 277 ~~~~--~ki~-----visva~llA~aI~~i~~ 301 (310)
.++. .... -.|...+|++||++--.
T Consensus 262 ~~~~~g~~p~~~~a~aYdA~~vl~~Ai~~ags 293 (332)
T cd06344 262 AQQLWGGDVSWRTATAYDATKALIAALSQGPT 293 (332)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99985899985668999999999999997599
No 330
>TIGR01748 rhaA L-rhamnose isomerase; InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process.
Probab=24.84 E-value=43 Score=14.34 Aligned_cols=104 Identities=28% Similarity=0.340 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCCEEEEEEEE--CCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHH-----------HH----
Q ss_conf 999999999589104448998--6997078885678689708998597888046799999999-----------99----
Q gi|254780409|r 11 NLAQEICDYLHTSLGKASVTY--FSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMI-----------DA---- 73 (310)
Q Consensus 11 ~La~~ia~~lg~~l~~~~~~~--F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~-----------~a---- 73 (310)
.-.++|+++-|-+|+...+.- -|||=.-+-+. -+ .| =.-|||-|-=+ ||
T Consensus 160 kasRriseYFGkeLGtps~~NiWiPDG~KDip~D------------Rl-tP-RkRL~eaLDevfsEkl~e~h~~davESK 225 (415)
T TIGR01748 160 KASRRISEYFGKELGTPSVTNIWIPDGIKDIPVD------------RL-TP-RKRLLEALDEVFSEKLDEKHTLDAVESK 225 (415)
T ss_pred HHHCHHHHHHHHHCCCCCCCCEECCCCCCCCCCC------------CC-CH-HHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 3301023453131067332405667886145657------------66-14-5899997426864305723140034553
Q ss_pred HHHCCCCHHHH--HCCCCCHHHCCCC--------CCCCCCHHHHHHHHHHEECC------------CCEEEEECCCC
Q ss_conf 98617200113--1023301103431--------12565214777652000026------------77269951583
Q gi|254780409|r 74 VRRSSARRITG--VIPYFGYCRQDRK--------PSPRTPISAKLVANLITQAG------------ADRVIMLDLHA 128 (310)
Q Consensus 74 ~k~~~A~~it~--ViPY~~YaRqDr~--------~~~~e~isak~~a~ll~~~G------------~d~vit~DlH~ 128 (310)
|=..||.+=|+ =-=||+|+--..+ |.|-|.||-|+=+-||=+-+ -|||+.+|=-.
T Consensus 226 LFGlGaEsYtVGShEFYmgYa~tr~kl~cLDaGHFHPTEviSnKiSs~~Ly~~~l~LHVSRPVRWDSDHVV~lDDEl 302 (415)
T TIGR01748 226 LFGLGAESYTVGSHEFYMGYALTRDKLLCLDAGHFHPTEVISNKISSLLLYSDKLLLHVSRPVRWDSDHVVVLDDEL 302 (415)
T ss_pred HHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEECCCCEEEECHHH
T ss_conf 42145210240633778877774202001127798860268789999987416626741588310577158722568
No 331
>PRK11749 putative oxidoreductase; Provisional
Probab=24.81 E-value=50 Score=13.92 Aligned_cols=37 Identities=35% Similarity=0.383 Sum_probs=28.0
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 55742899521320336688898987526875217872055
Q gi|254780409|r 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHG 247 (310)
Q Consensus 207 V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THg 247 (310)
..||.|+|+ -.|.|-+.++..+++.||++|+++.--+
T Consensus 274 ~~Gk~VvVI----GgGnvA~D~Arta~r~GA~~V~vv~rr~ 310 (460)
T PRK11749 274 AVGKRVVVI----GGGNTAMDAARTAKRLGAESVTIVYRRG 310 (460)
T ss_pred CCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 448748998----9846699989999982898463300075
No 332
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.74 E-value=50 Score=13.92 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=37.1
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHH---HCCCCEEEECCC
Q ss_conf 55742899521320336688898987526875217872055557168-98886---369989998178
Q gi|254780409|r 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSS-IERIE---KSKMKELVITDS 270 (310)
Q Consensus 207 V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a-~e~l~---~s~i~~iv~TnT 270 (310)
..||+|+++ -.|.|-.-++...++.||++|+++.--+--.-+| .+.+. +.+++-...++.
T Consensus 576 ~~Gk~VvVI----GGGntAmD~artA~RlGAe~V~ivyRR~~~emPA~~~Ei~~A~eEGV~f~~l~~P 639 (760)
T PRK12778 576 AFGKNVAVI----GGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMPARLEEVKHAKEEGIEFLTLHNP 639 (760)
T ss_pred CCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 269889999----9976099999999983998699970377211999989999998579889916897
No 333
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=24.56 E-value=51 Score=13.89 Aligned_cols=138 Identities=11% Similarity=0.102 Sum_probs=77.4
Q ss_pred CCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH---HHHHHCC-CCEEEEE--------CCCC---CCCCCE
Q ss_conf 58862000103777787653058555188516656357899---9999709-9799983--------2676---763210
Q gi|254780409|r 135 FDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRAR---ALAKRLG-CLLAIVD--------KRRE---HPGKIE 199 (310)
Q Consensus 135 F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~---~~a~~L~-~~~~~~~--------K~R~---~~~~v~ 199 (310)
|.+|++....+..+.+|+.+......-.||+++..-+-.|. .+.+.++ .++.+-| ++.. ....+.
T Consensus 13 ~gi~~~~~~~m~~~~~~l~~~~~~~~g~vVt~N~e~v~~A~~dp~~~~~l~~Adlv~pDG~giVwa~r~~~~~~~~eRV~ 92 (246)
T PRK03692 13 RGLQLIGWRDMQHALDYLFADGQLKTGTLVAINAEKLLTAEDNPEVRELINAAEYKYADGISVVRSIRKKYPQAQVSRVA 92 (246)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCCHHHHHHHHHCCEECCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 37051465779999999985666568749997889998862099999999838966779899999999707988877527
Q ss_pred EECCC------CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH----HHHHHHCCCCEEEECC
Q ss_conf 00024------5455742899521320336688898987526875217872055557168----9888636998999817
Q gi|254780409|r 200 VMNII------GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSS----IERIEKSKMKELVITD 269 (310)
Q Consensus 200 ~~~~~------gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a----~e~l~~s~i~~iv~Tn 269 (310)
+.++. ..-+|..+.++ =.+-+.+.++++.|+++= .-..+-+-||.|+.+. .++|++++-+-+++.=
T Consensus 93 G~DL~~~Ll~~a~~~g~~vfll---G~~p~v~~~a~~~l~~~y-~l~IvG~~~Gyf~~~e~~~ii~~I~~s~pdil~Vgl 168 (246)
T PRK03692 93 GADLWEALMARAGKEGTPVFLV---GGKPEVLAQTEAKLRAQW-NVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAM 168 (246)
T ss_pred HHHHHHHHHHHHHHHCCCEEEE---CCCHHHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 1999999999888749837984---288899999999999874-986998469999837779999999856999999956
Q ss_pred CCCCCHH
Q ss_conf 8878434
Q gi|254780409|r 270 SIQPTDL 276 (310)
Q Consensus 270 Ti~~~~~ 276 (310)
..|.+|.
T Consensus 169 G~PkQE~ 175 (246)
T PRK03692 169 GSPKQEI 175 (246)
T ss_pred CCCHHHH
T ss_conf 9818999
No 334
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=24.49 E-value=32 Score=15.24 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=14.2
Q ss_pred EEECHHHHHHHHHHHHCCCC
Q ss_conf 98117999999998718887
Q gi|254780409|r 285 ILTIAQLMGEAINRTFEERS 304 (310)
Q Consensus 285 visva~llA~aI~~i~~~~S 304 (310)
.-|++.++++-++|-..=++
T Consensus 396 A~dLaeLf~RPL~R~~~L~~ 415 (425)
T PRK02842 396 AGDLAELFTRPLRRRAALKS 415 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 77899998776677775421
No 335
>TIGR00087 surE 5'/3'-nucleotidase SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response . E. coli cells with mutations in the surE gene survive poorly in stationary phase . The structure of SurE homologues have been determined from Thermotoga maritima and the archaea Pyrobaculum aerophilum . The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity.
Probab=24.32 E-value=51 Score=13.86 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHCC-CCC
Q ss_conf 3366888989875268-752
Q gi|254780409|r 221 TGGTLCGAADALYEQG-ALS 239 (310)
Q Consensus 221 TGgTi~~aa~~Lk~~G-A~~ 239 (310)
+-||+..|.+..-. | .++
T Consensus 153 ~SGTvgAA~E~~~~-Gn~pa 171 (326)
T TIGR00087 153 YSGTVGAAMEAAIH-GNVPA 171 (326)
T ss_pred HCCHHHHHHHHHHH-CCCCC
T ss_conf 02538998886651-78640
No 336
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=24.19 E-value=51 Score=13.85 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=39.7
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCC-----CCCCHHHHHHHH
Q ss_conf 788856786897089985978880467999999999998617200113102330110343112-----565214777652
Q gi|254780409|r 37 VFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPS-----PRTPISAKLVAN 111 (310)
Q Consensus 37 ~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~-----~~e~isak~~a~ 111 (310)
.+-||.++= =+.+|+|.-.+.- -+.|++||- .+ +.. ..+|+-.. .|-|=|..++ +
T Consensus 7 ~~~~~~~~~-~r~iyvIGDIHGc-~d~L~~lL~---~i---~~~-----------~~~D~LI~lGDlIDRGPdS~~vl-~ 66 (218)
T PRK11439 7 VYQRIAGKQ-WRHIWLVGDIHGC-FEQLMRKLR---HC---RFD-----------PWRDLLISVGDLIDRGPQSLRCL-Q 66 (218)
T ss_pred HHEEECCCC-CCEEEEEECCCCC-HHHHHHHHH---HC---CCC-----------CCCCEEEECCCEECCCCCHHHHH-H
T ss_conf 430115778-7469999646589-999999999---63---899-----------54678998586017897879999-9
Q ss_pred HHEECCCCEEEEECCCCHHHHHHCC
Q ss_conf 0000267726995158357765258
Q gi|254780409|r 112 LITQAGADRVIMLDLHAGQVQGFFD 136 (310)
Q Consensus 112 ll~~~G~d~vit~DlH~~~~~~~F~ 136 (310)
++..-+ -+...=.|..-+..+++
T Consensus 67 ll~~~~--~~~v~GNHE~mll~~~~ 89 (218)
T PRK11439 67 LLREHW--VRAVRGNHEQMALDALA 89 (218)
T ss_pred HHHHCC--CEEEECCHHHHHHHHHH
T ss_conf 998289--84976147999998764
No 337
>TIGR00016 ackA acetate kinase; InterPro: IPR004372 Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate.; GO: 0016301 kinase activity, 0016774 phosphotransferase activity carboxyl group as acceptor, 0006082 organic acid metabolic process.
Probab=24.18 E-value=43 Score=14.35 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHHHEECCCCEEEEEC
Q ss_conf 6521477765200002677269951
Q gi|254780409|r 101 RTPISAKLVANLITQAGADRVIMLD 125 (310)
Q Consensus 101 ~e~isak~~a~ll~~~G~d~vit~D 125 (310)
-+....+.+.++....-+..|..+|
T Consensus 138 a~l~gIe~~~~~~~~~~~k~VaVFD 162 (416)
T TIGR00016 138 AHLDGIEAALKLKVLPKAKNVAVFD 162 (416)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 2479999999720367887168863
No 338
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=24.14 E-value=52 Score=13.84 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCC-------CHHHHHH
Q ss_conf 214777652000026772699515835776525886200010377778765305855518851665-------6357899
Q gi|254780409|r 103 PISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDV-------GGVVRAR 175 (310)
Q Consensus 103 ~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~-------G~~~ra~ 175 (310)
..+.+.-.++|+..|+|.++.++. +-..-++++...+-..+ .+.+. .-+||+.|. |.+..-+
T Consensus 54 l~~~~~k~~~l~~~gid~~~~i~F---------~~~~~~ls~~~Fi~~~l-~~l~~-~~iVvG~Df~FG~~r~G~~~~L~ 122 (179)
T cd02064 54 LTTLEEKLELLAALGVDYLLVLPF---------DKEFASLSAEEFVKDLL-VKLNA-KHVVVGFDFRFGKGRSGNAELLR 122 (179)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECC---------CHHHHCCCHHHHHHHHH-HCCCC-EEEEECCCCCCCCCCCCCHHHHH
T ss_conf 589999999998669999998447---------88886399999999874-14796-39997773025789887999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCE
Q ss_conf 999970997999832676763210
Q gi|254780409|r 176 ALAKRLGCLLAIVDKRREHPGKIE 199 (310)
Q Consensus 176 ~~a~~L~~~~~~~~K~R~~~~~v~ 199 (310)
.+++..+..+.++.+.......++
T Consensus 123 ~~~~~~~~~v~~i~~~~~~~~~IS 146 (179)
T cd02064 123 ELGEKYGFEVEIVPPVTIDGEKVS 146 (179)
T ss_pred HHHHHHCCEEEEECCEEECCCEEE
T ss_conf 999872964999376960891673
No 339
>PRK13137 consensus
Probab=24.04 E-value=52 Score=13.83 Aligned_cols=129 Identities=14% Similarity=0.209 Sum_probs=75.0
Q ss_pred HHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 14777652000026772699515835776525886200010377778765305855518851665635789999997099
Q gi|254780409|r 104 ISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGC 183 (310)
Q Consensus 104 isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~ 183 (310)
....-+++-...+|+|.+|..||- .+. ...+.+..++ ++.+.+-+++|... -+|.+.+++.-.
T Consensus 115 yG~e~F~~~a~~aGvdGlIipDLP-----------~eE---~~~~~~~~~~-~gi~~I~lvaPtT~-~eRi~~i~~~a~- 177 (266)
T PRK13137 115 VGPEEFMRLFQEAGVDGLILPDLP-----------PDQ---DPEIADLAAE-IGLAVTFLIAPTST-PERVKLVARACT- 177 (266)
T ss_pred HCHHHHHHHHHHCCCCEEEECCCC-----------HHH---HHHHHHHHHH-CCCCEEEEECCCCC-HHHHHHHHHHCC-
T ss_conf 589999999997696099947999-----------788---8999999987-59978999379999-999999996088-
Q ss_pred CEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 79998326767632100002454557428995213203366888989875268752178720555571689888636998
Q gi|254780409|r 184 LLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMK 263 (310)
Q Consensus 184 ~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~ 263 (310)
+|.|+--..--+|. |.-+- -..+....+.+|+.. .+-+++=.|+=+....+.+.+. .|
T Consensus 178 GFiY~Vs~~GvTG~------------r~~~~-------~~~l~~~i~~ik~~t--~~Pv~vGFGIs~~e~~~~~~~~-aD 235 (266)
T PRK13137 178 GFLYAVSVTGVTGM------------REGLA-------LGEVPDMLRLARQYA--ALPVAVGFGVKDKATAAQVAQV-AD 235 (266)
T ss_pred CCEEEEECCCCCCC------------CCCCC-------HHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHH-CC
T ss_conf 82899744676677------------76678-------799999999998638--9987998266988999999831-99
Q ss_pred EEEECCCC
Q ss_conf 99981788
Q gi|254780409|r 264 ELVITDSI 271 (310)
Q Consensus 264 ~iv~TnTi 271 (310)
-+|+=-.+
T Consensus 236 GvIVGSai 243 (266)
T PRK13137 236 GVVVGSAF 243 (266)
T ss_pred EEEEHHHH
T ss_conf 99980999
No 340
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=23.99 E-value=52 Score=13.82 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=7.5
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 789999997099799983
Q gi|254780409|r 172 VRARALAKRLGCLLAIVD 189 (310)
Q Consensus 172 ~ra~~~a~~L~~~~~~~~ 189 (310)
++.+.+|+.+|.|+.-++
T Consensus 54 ~~t~~lA~~~GIpl~~l~ 71 (236)
T TIGR00021 54 KQTAELARELGIPLSSLD 71 (236)
T ss_pred HHHHHHHHHCCCEEECCC
T ss_conf 899999998298040225
No 341
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=23.93 E-value=52 Score=13.82 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=46.7
Q ss_pred EECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCH----------HHHHH-HHHHHCC
Q ss_conf 002677269951583577652588620001037777876530585551885166563----------57899-9999709
Q gi|254780409|r 114 TQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGG----------VVRAR-ALAKRLG 182 (310)
Q Consensus 114 ~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~----------~~ra~-~~a~~L~ 182 (310)
+.+|.+.-+++-+|... +|-+ .....+++.+...-++ |||.-.-| +-|.+ .+|+.++
T Consensus 60 ~~~Gl~~~vavGvHPr~------iP~e----~~~~l~~L~~~l~~e~--VvAiGEiGLe~~t~~E~evf~~QL~LA~e~d 127 (254)
T COG1099 60 EKAGLKLKVAVGVHPRA------IPPE----LEEVLEELEELLSNED--VVAIGEIGLEEATDEEKEVFREQLELARELD 127 (254)
T ss_pred HHHCCEEEEEECCCCCC------CCCH----HHHHHHHHHHHCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 86083046773337777------8905----9999999886516478--3676403322178889999999999998749
Q ss_pred CCEEEEECCCCCCC-CCEEECCCC--CCCCCEEEE
Q ss_conf 97999832676763-210000245--455742899
Q gi|254780409|r 183 CLLAIVDKRREHPG-KIEVMNIIG--KVEGKDCIL 214 (310)
Q Consensus 183 ~~~~~~~K~R~~~~-~v~~~~~~g--dV~gr~vII 214 (310)
.|..+-..+|.... ...++.+.+ +++.+.++|
T Consensus 128 vPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvI 162 (254)
T COG1099 128 VPVIVHTPRRNKKEATSKILDILIESGLKPSLVVI 162 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHEEH
T ss_conf 96799678776056789999999874998012101
No 342
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=23.92 E-value=52 Score=13.81 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=16.6
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 455742899521320336688898987526875217872
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
+++++.|+|+ -.||+-..++-.|.+.|+++|+++.
T Consensus 119 ~~~~k~vlIl----GaGGaarai~~al~~~g~~~i~i~n 153 (275)
T PRK00258 119 DLKGKRILLL----GAGGAARAVILPLLELGVAEITIVN 153 (275)
T ss_pred CCCCCEEEEE----CCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8568759998----8871079999999976999899995
No 343
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=23.88 E-value=52 Score=13.81 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC--HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHH
Q ss_conf 7888046799999999999861720--01131023301103431125652147776520000267726995158357765
Q gi|254780409|r 56 TSCPANDYLMELLIMIDAVRRSSAR--RITGVIPYFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQG 133 (310)
Q Consensus 56 ~~~~~nd~lmeLl~~~~a~k~~~A~--~it~ViPY~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~ 133 (310)
++.+.|..+.+- +++-++.+|.+ -+|+-.|.+++-..|.+..-..|.............+... -.....+
T Consensus 131 LY~~~dr~~~~~--li~RA~~aG~~alvlTVD~p~~g~Rerd~r~~~~~p~~~~~~~~~~~~~~~~~------~~~~~~~ 202 (351)
T cd04737 131 LYMSKDDGFNRS--LLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGK------GISEIYA 202 (351)
T ss_pred EECCCCHHHHHH--HHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC------CHHHHHH
T ss_conf 713588799999--99999986999899963178878627788629988999872234467775555------5688988
Q ss_pred HCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH--HHHHCCCCEEEEE--CCCCCCCC---CEEE-CCCC
Q ss_conf 2588620001037777876530585551885166563578999--9997099799983--26767632---1000-0245
Q gi|254780409|r 134 FFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARA--LAKRLGCLLAIVD--KRREHPGK---IEVM-NIIG 205 (310)
Q Consensus 134 ~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~--~a~~L~~~~~~~~--K~R~~~~~---v~~~-~~~g 205 (310)
.++.++ ...-.+|+++.. .-++|+ .|+-.++. .|...|++=.++. --|.-++. .+.. .+..
T Consensus 203 ~~~~~~-----~w~di~~lr~~~--~lplil----KGI~~~eDA~~A~~~G~dgIvVSNHGGRQLD~~p~~i~~LpeI~~ 271 (351)
T cd04737 203 AAKQKL-----SPADIEFIAKIS--GLPVIV----KGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAE 271 (351)
T ss_pred HHCCCC-----CHHHHHHHHHHC--CCCEEE----CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 632579-----989999999864--998532----366779999999874998899778751235676047889999999
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 45574289952132033668889898752687521787
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
.|.||--|++|--|.+|.-+.+|. ..||+-|.+-
T Consensus 272 av~~~~~V~~DgGIR~G~DV~KAL----ALGA~aV~iG 305 (351)
T cd04737 272 AVNHRVPIIFDSGVRRGEHVFKAL----ASGADAVAVG 305 (351)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHH----HCCCCEEEEC
T ss_conf 866896499769867468999999----7699889757
No 344
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=23.79 E-value=52 Score=13.80 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHC---CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHH
Q ss_conf 8555188516656357899999970---9979998326767632100002454557428995213203366888989875
Q gi|254780409|r 157 DISNLMVVSPDVGGVVRARALAKRL---GCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALY 233 (310)
Q Consensus 157 ~~~~~vVVaPD~G~~~ra~~~a~~L---~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk 233 (310)
.-+.+.+++-- ++...|..+..+| |.+..... +. . ...+ ........||+|+=..-..-..++++++.+|
T Consensus 127 ~A~~I~i~G~G-~S~~vA~~~~~kl~r~g~~~~~~~---d~-~-~~~~-~a~~~~~~Dvvi~iS~sG~t~e~i~~~~~Ak 199 (284)
T PRK11302 127 QAKKISFFGLG-ASAAVAHDAQNKFFRFNVPVVYFD---DI-V-MQRM-SCMNSSDGDVVVLISHTGRTKSLVELAQLAR 199 (284)
T ss_pred CCCEEEEEECC-CCHHHHHHHHHHHHHCCCCEEECC---CH-H-HHHH-HHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 18958999648-509999999999984398146428---78-9-9999-9971999888999737999879999999999
Q ss_pred HCCCCCEEEEE
Q ss_conf 26875217872
Q gi|254780409|r 234 EQGALSVTAYI 244 (310)
Q Consensus 234 ~~GA~~V~~~~ 244 (310)
++||+ |.++.
T Consensus 200 ~~ga~-vIaIT 209 (284)
T PRK11302 200 ENGAT-VIGIT 209 (284)
T ss_pred HCCCC-EEEEC
T ss_conf 87995-89977
No 345
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=23.74 E-value=52 Score=13.79 Aligned_cols=123 Identities=21% Similarity=0.357 Sum_probs=87.3
Q ss_pred HHHHHHHHCCC--CCEEEE-ECC----CCHHHHHHHHHHHCCCCEE-EEEC---CCCCCCCC-----EEECCCC------
Q ss_conf 77876530585--551885-166----5635789999997099799-9832---67676321-----0000245------
Q gi|254780409|r 148 LERDIKERNDI--SNLMVV-SPD----VGGVVRARALAKRLGCLLA-IVDK---RREHPGKI-----EVMNIIG------ 205 (310)
Q Consensus 148 l~~~l~~~~~~--~~~vVV-aPD----~G~~~ra~~~a~~L~~~~~-~~~K---~R~~~~~v-----~~~~~~g------ 205 (310)
|++-|+-...+ .+.+|+ -|- +|+..++..++.+++++.. ++.- ....|... ++..-.|
T Consensus 90 L~DTi~~~~~y~D~D~iViRH~~~GvCegaar~~ae~~~R~~~~vPsviNAGDG~~qHPTQ~LLDLyTi~~~fGPDnP~l 169 (336)
T TIGR00670 90 LADTIKTLSAYGDSDAIVIRHPLEGVCEGAARLAAEVSDRLGIEVPSVINAGDGSGQHPTQTLLDLYTIYEEFGPDNPAL 169 (336)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 78899988540475569983586541346889998863110457871663687878797534788999998718886303
Q ss_pred -CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCC-CCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf -4557428995213203366888989875268752178720555-571689888636998999817887
Q gi|254780409|r 206 -KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGV-LSSSSIERIEKSKMKELVITDSIQ 272 (310)
Q Consensus 206 -dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgi-fs~~a~e~l~~s~i~~iv~TnTi~ 272 (310)
+++|.++-+|=|+ --|.|+-.-++.|.-.|..+|++++---| +...-++.+...|+ ++.++-++.
T Consensus 170 ~~~~Gl~iA~vGDl-kygRtvhS~~~~L~~f~~~~v~l~sP~~LrmP~~~~e~~~~~G~-~~~~~~~l~ 236 (336)
T TIGR00670 170 ERLDGLKIALVGDL-KYGRTVHSLIKALALFGNAEVYLISPEELRMPKEILEDLKAKGV-KVRETESLE 236 (336)
T ss_pred HHCCCCEEEEEEEC-CCCHHHHHHHHHHHHHCCCEEEEECCHHHHCHHHHHHHHHHCCC-EEEEEEEHH
T ss_conf 22288579998431-20247667889986518956998677243061788999852896-289952243
No 346
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=23.63 E-value=53 Score=13.78 Aligned_cols=137 Identities=10% Similarity=0.042 Sum_probs=65.6
Q ss_pred HHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEE---CCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 4777652000026772699515835776525886200---0103777787653058555188516656357899999970
Q gi|254780409|r 105 SAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDN---LYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRL 181 (310)
Q Consensus 105 sak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~n---l~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L 181 (310)
..+-+++.+...+.|-||.+++|.....++|-+...+ .++...+.+..+-.++ +--|..=.......++..
T Consensus 27 a~~~~~~~i~~~~PDtIVV~SpHw~~~~d~~~~~~p~~~g~~~~~~~~~fg~~~y~------~~~D~eLa~~i~~~a~~~ 100 (268)
T cd07371 27 AYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWPEFGRLDYS------INVDVELAEACVEEGRKA 100 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCCEECCCCHHHHCCCCCC------CCCCHHHHHHHHHHHHHC
T ss_conf 99999999986599989998798654157167425787870136641443545645------558899999999999977
Q ss_pred CCCEEEEECCC--CCCCCCEEECC-CCCCCCCEEEEEC--------HHHCCHHHHHHHHHHHHHCCCCCEEEEEE----C
Q ss_conf 99799983267--67632100002-4545574289952--------13203366888989875268752178720----5
Q gi|254780409|r 182 GCLLAIVDKRR--EHPGKIEVMNI-IGKVEGKDCILID--------DIVDTGGTLCGAADALYEQGALSVTAYIT----H 246 (310)
Q Consensus 182 ~~~~~~~~K~R--~~~~~v~~~~~-~gdV~gr~vIIVD--------Dii~TGgTi~~aa~~Lk~~GA~~V~~~~T----H 246 (310)
|.+...+.... -..|...-+.. ..+.+.+-|+|.- +...-|.. ..+++++.|- +|.++++ |
T Consensus 101 Gi~~~~~~~~~~~lDhGtiVPL~fl~~~~~~~~V~is~~~~~~~~~~~~~~G~~---i~~A~~~~~r-rvv~iASG~LSH 176 (268)
T cd07371 101 GLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDL---AGKATRDAGK-RVAVLGSGGLSH 176 (268)
T ss_pred CCCEEEECCCCCCCCEEEEEHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH---HHHHHHHCCC-CEEEEEECCCCC
T ss_conf 991577407986675025541886487888755999607877898999999999---9999997299-689999457545
Q ss_pred CCCCH
Q ss_conf 55571
Q gi|254780409|r 247 GVLSS 251 (310)
Q Consensus 247 gifs~ 251 (310)
-+|.+
T Consensus 177 rl~~~ 181 (268)
T cd07371 177 SHFHE 181 (268)
T ss_pred CCCCC
T ss_conf 55567
No 347
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=23.54 E-value=53 Score=13.77 Aligned_cols=147 Identities=17% Similarity=0.188 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHH----HHCCCCCEEEE-ECCCC-----
Q ss_conf 565214777652000026772699515835776525886200010377778765----30585551885-16656-----
Q gi|254780409|r 100 PRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIK----ERNDISNLMVV-SPDVG----- 169 (310)
Q Consensus 100 ~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~----~~~~~~~~vVV-aPD~G----- 169 (310)
-|++....-..+.+..+|+-.+..=|--.|.-.|.+... .+......++-++ .+.+ .+.+|+ -.|+-
T Consensus 89 yG~~~nv~rtV~~~e~aGvagi~IEDq~~pKrcgh~~gk--~lv~~~e~~~KI~AA~~ar~~-~df~IiARTDA~~~~gl 165 (292)
T PRK11320 89 FGGAFNIARTIKSMIKAGAAAVHIEDQVGQKRCGHRPNK--EIVSQEEMVDRIKAAVDARTD-PDFVIMARTDALAVEGL 165 (292)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCH
T ss_conf 882788999999999749968984155566556866675--333499999999999985679-98599995363345886
Q ss_pred --HHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf --357899999970997999832676763210000245455742899521320336688898987526875217872055
Q gi|254780409|r 170 --GVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHG 247 (310)
Q Consensus 170 --~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THg 247 (310)
+++|++.+ ...|++..+++--++. .+.+ .+.-.+ ++=++=.|+..|.|=.-..+.|.+.|-+-| .+..|+
T Consensus 166 deAi~Ra~aY-~eAGAD~if~ea~~~~-ee~~--~~~~~~---~~Pll~n~~e~g~tP~~s~~el~~lG~~~v-iyp~~~ 237 (292)
T PRK11320 166 DAAIERAQAY-VEAGADMIFPEAITEL-DMYR--RFADAV---KVPILANITEFGATPLFTTEELASAGVAMV-LYPLSA 237 (292)
T ss_pred HHHHHHHHHH-HHCCCCEEECCCCCCH-HHHH--HHHHHC---CCCEEEEECCCCCCCCCCHHHHHHCCCCEE-EECCHH
T ss_conf 9999999999-9779989941789999-9999--999977---999899848999998879999997799899-988699
Q ss_pred CCC-HHHHHHH
Q ss_conf 557-1689888
Q gi|254780409|r 248 VLS-SSSIERI 257 (310)
Q Consensus 248 ifs-~~a~e~l 257 (310)
++. ..|++..
T Consensus 238 lraa~~Am~~~ 248 (292)
T PRK11320 238 FRAMNKAAENV 248 (292)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 348
>cd01773 Faf1_like1_UBX Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=23.49 E-value=46 Score=14.19 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=19.1
Q ss_pred CEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 104448998699707888567868970899859788804679999999999
Q gi|254780409|r 23 SLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDA 73 (310)
Q Consensus 23 ~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a 73 (310)
|.+++. =||||||...+- +. ..+.|+.|+-.++.
T Consensus 4 P~~kl~-iR~P~Ger~~~~--------------f~--as~~lq~L~~~v~s 37 (82)
T cd01773 4 PKARLM-LRYPDGKREQIA--------------LP--EQAKLLALVRHVQS 37 (82)
T ss_pred CCEEEE-EECCCCCEEEEE--------------EE--CCCHHHHHHHHHHH
T ss_conf 750799-998999878999--------------63--57629999999986
No 349
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.47 E-value=53 Score=13.76 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=57.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC-HHHCC-CC-----CCCCCCHHHHHHHHHHEECCC
Q ss_conf 897089985978880467999999999998617200113102330-11034-31-----125652147776520000267
Q gi|254780409|r 46 RGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFG-YCRQD-RK-----PSPRTPISAKLVANLITQAGA 118 (310)
Q Consensus 46 rg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~-YaRqD-r~-----~~~~e~isak~~a~ll~~~G~ 118 (310)
.+-|++|+.+.-++.|.. +.++++.|.+-++ -+-.+. +..+. .+ -..|-.-|+.+++.+|+.+|.
T Consensus 66 ~~~d~vV~SPgI~~~~p~-------l~~a~~~gi~i~~-~~el~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~ 137 (445)
T PRK04308 66 NGFDILALSPGISERQPD-------IEAFKQNGGRVLG-DIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred CCCCEEEECCCCCCCCHH-------HHHHHHCCCCEEC-HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 599999989953899999-------9999975995715-99999999841699579994899837799999999997599
Q ss_pred CEE-----------------------EEECCCCHHHHHHC----------CCCCEECCHHHHHHHHHHHH---CCCCCEE
Q ss_conf 726-----------------------99515835776525----------88620001037777876530---5855518
Q gi|254780409|r 119 DRV-----------------------IMLDLHAGQVQGFF----------DIPTDNLYALPILERDIKER---NDISNLM 162 (310)
Q Consensus 119 d~v-----------------------it~DlH~~~~~~~F----------~ip~~nl~~~~~l~~~l~~~---~~~~~~v 162 (310)
+.. +.+++-|-|++..+ |+..|||+-..-+.+|+..+ .......
T Consensus 138 ~~~~~GNiG~p~~~~~~~~~~~~~d~~VlElSSfql~~~~~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~~~~~~ 217 (445)
T PRK04308 138 DTVIAGNIGTPVLEAELQREGKKADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQ 217 (445)
T ss_pred CEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCCCCCEE
T ss_conf 62998503752111144432787867999960334466554376389985898567545359999999999744579779
Q ss_pred EEECCC
Q ss_conf 851665
Q gi|254780409|r 163 VVSPDV 168 (310)
Q Consensus 163 VVaPD~ 168 (310)
|+.-|.
T Consensus 218 vln~dd 223 (445)
T PRK04308 218 VLNADD 223 (445)
T ss_pred EECCCC
T ss_conf 993871
No 350
>PRK05290 hydroxylamine reductase; Provisional
Probab=23.35 E-value=53 Score=13.74 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=25.6
Q ss_pred CCCEEECCC-CCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 321000024-5455742899521320336688898987526875217872055
Q gi|254780409|r 196 GKIEVMNII-GKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHG 247 (310)
Q Consensus 196 ~~v~~~~~~-gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THg 247 (310)
|..+.+.+. |-.+| .+|+| ||.-+.-.-+.|++---+-|.++ |||
T Consensus 218 G~Pept~V~~g~~~g-~~ILV-----SGHDL~DLe~LL~QTeg~GInVY-THg 263 (540)
T PRK05290 218 GHPEPTKVNIGVRKG-KGILV-----SGHDLKDLEELLEQTEGTGINVY-THG 263 (540)
T ss_pred CCCCEEEEECCCCCC-CEEEE-----ECCCHHHHHHHHHHHCCCCEEEE-ECC
T ss_conf 999306872267688-87999-----69898999999997407885798-666
No 351
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.26 E-value=54 Score=13.73 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=24.8
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 98997689999999999995891044489986997
Q gi|254780409|r 1 MKIFAGNSNRNLAQEICDYLHTSLGKASVTYFSDR 35 (310)
Q Consensus 1 m~i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dG 35 (310)
|++|--+|.+++-+.|-..+|-++.-..-+.-+-|
T Consensus 9 ~~~~~a~s~~e~~k~~r~~~~~~~~i~~~~v~~~~ 43 (407)
T PRK12726 9 MEIFKANSKREIHKKIRLVTNEPYKITDERVTKLG 43 (407)
T ss_pred HHHHHHCCCHHHHHHHHHHHCCCCEEECCEEEECC
T ss_conf 99999603299999999874898174134255515
No 352
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.18 E-value=54 Score=13.72 Aligned_cols=25 Identities=4% Similarity=0.212 Sum_probs=11.8
Q ss_pred HHHHHEECCCCEEEEECCCCHHHHHHC
Q ss_conf 652000026772699515835776525
Q gi|254780409|r 109 VANLITQAGADRVIMLDLHAGQVQGFF 135 (310)
Q Consensus 109 ~a~ll~~~G~d~vit~DlH~~~~~~~F 135 (310)
+.+.+.....|-++.+. +....+||
T Consensus 34 ~r~~l~~~~PDvvVi~~--~DH~~~Ff 58 (269)
T PRK13358 34 IGRRLRALRPDLLVIIG--SDHLFNIT 58 (269)
T ss_pred HHHHHHHHCCCEEEEEC--CHHHHHCC
T ss_conf 99999981999999985--43787607
No 353
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=23.00 E-value=46 Score=14.16 Aligned_cols=203 Identities=17% Similarity=0.206 Sum_probs=104.1
Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 99768999999999999589104448998699707888567868970899859788-80467999999999998617200
Q gi|254780409|r 3 IFAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSC-PANDYLMELLIMIDAVRRSSARR 81 (310)
Q Consensus 3 i~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~-~~nd~lmeLl~~~~a~k~~~A~~ 81 (310)
|++-+++-....+|.+.-|+++ +=+.+|+ |--++=..||-+ ++++ .+.=..|. +.||++
T Consensus 19 iv~lTAYD~~~A~~~~~~Gv~v--------------iLVGDSL-gM~~lg~~~Tl~vsv~~----m~yHT~AV-~rGa~~ 78 (267)
T TIGR00222 19 IVALTAYDYAFAKLFEDAGVDV--------------ILVGDSL-GMVVLGLDSTLPVSVAD----MIYHTKAV-KRGAPN 78 (267)
T ss_pred EEEECHHHHHHHHHHHHCCCCE--------------EEEECCC-CCEEECCCCCCCCCHHH----HHHHHHHH-HCCCCC
T ss_conf 7875266789999997479808--------------9973211-06660447761101888----88788998-547987
Q ss_pred --HHHHCCCCCHHHCCC------------------CCCCCCCHHHHHHHHHHEECCCCEEEEECCC---CHHH---HHHC
Q ss_conf --113102330110343------------------1125652147776520000267726995158---3577---6525
Q gi|254780409|r 82 --ITGVIPYFGYCRQDR------------------KPSPRTPISAKLVANLITQAGADRVIMLDLH---AGQV---QGFF 135 (310)
Q Consensus 82 --it~ViPY~~YaRqDr------------------~~~~~e~isak~~a~ll~~~G~d~vit~DlH---~~~~---~~~F 135 (310)
|.+=|||+.|....+ |-.+|+|--.+.+..|=+.. |. |==| .||. .|=|
T Consensus 79 ~liv~DlPF~sY~~S~~~Al~nA~~v~~e~gA~avKLEGG~P~~~e~v~~LT~~G----vp-V~GH~GLtPQsV~~~GGY 153 (267)
T TIGR00222 79 ALIVTDLPFMSYKESPEQALKNAARVLQETGADAVKLEGGEPELVETVKALTEEG----VP-VVGHLGLTPQSVRLLGGY 153 (267)
T ss_pred CEEEECCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC----CE-EEECCCCCCCEEEECCCE
T ss_conf 3466337400011267889999999973237765762078806889999986278----45-874147887334005740
Q ss_pred CCCC-EECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEE-CCCCCCCCCEEE
Q ss_conf 8862-00010377778765305855518851665635789999997099799983267676321000-024545574289
Q gi|254780409|r 136 DIPT-DNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLAIVDKRREHPGKIEVM-NIIGKVEGKDCI 213 (310)
Q Consensus 136 ~ip~-~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~-~~~gdV~gr~vI 213 (310)
.+.= +.-.+..+|.+.|+-..-.-...|. ..=-.+.|+++++.|.+|.-=+---..-+|.+-+. +..|---++.-=
T Consensus 154 k~qGk~~~~~~kLL~dAl~LeeAGv~lLVL--E~vp~eLA~~Ite~L~IP~IGIGAG~~~DGQvLV~~D~lG~~~~~~Pk 231 (267)
T TIGR00222 154 KVQGKDEEAAKKLLEDALALEEAGVQLLVL--ECVPAELAAKITEKLKIPVIGIGAGKKCDGQVLVYHDLLGLTVEFKPK 231 (267)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHCCCCCEEEECCCCCCCCCEEHHHHHHCCCCCCCCC
T ss_conf 002788788888999999999876674353--276825788897307998674378898883114545563257888897
Q ss_pred EECHHHCCHHHHHHHHHHH
Q ss_conf 9521320336688898987
Q gi|254780409|r 214 LIDDIVDTGGTLCGAADAL 232 (310)
Q Consensus 214 IVDDii~TGgTi~~aa~~L 232 (310)
-+-.-...-+||.+|++..
T Consensus 232 Fv~~Yl~~~~~I~~Av~~Y 250 (267)
T TIGR00222 232 FVKEYLKLKETIEEAVKQY 250 (267)
T ss_pred CHHHHCCCCHHHHHHHHHH
T ss_conf 1286515322589999998
No 354
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=22.88 E-value=54 Score=13.68 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=25.8
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 4557428995213203366888989875268752178720
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT 245 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T 245 (310)
+++|+.++|+ -.||+-..++-.|++.|+++|+++--
T Consensus 123 ~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 123 DVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6678889998----97689999999999869987999958
No 355
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=22.84 E-value=40 Score=14.56 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=17.1
Q ss_pred CCCCHHH--HHHHHHHHCCCEEEEEEEE
Q ss_conf 6899999--9999999589104448998
Q gi|254780409|r 6 GNSNRNL--AQEICDYLHTSLGKASVTY 31 (310)
Q Consensus 6 g~~~~~L--a~~ia~~lg~~l~~~~~~~ 31 (310)
|++.++| |++||+.||+++..+.+.+
T Consensus 56 C~~~~dl~~a~~ic~~LGi~l~~~nf~~ 83 (394)
T TIGR00420 56 CSSAEDLRDAQAICEKLGIPLEKVNFQK 83 (394)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf 8368879999999985598189855078
No 356
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.84 E-value=23 Score=16.14 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=42.3
Q ss_pred EECCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEE-EEECCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 97689999999999995891044489986997078885678689708-998597888046799999999999861720
Q gi|254780409|r 4 FAGNSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDV-FIVQSTSCPANDYLMELLIMIDAVRRSSAR 80 (310)
Q Consensus 4 ~~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV-~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~ 80 (310)
+.+..-.+|-++|-+.|+-..+++.+.--|+-|.-+++.|+.-.-.+ ..--|.++-+...+ +.|+.+.|.+
T Consensus 8 l~ar~i~ELleki~e~lnE~~~eiyinlr~tr~v~vallens~~vK~Ig~P~s~y~k~skkv------lkaleq~gI~ 79 (139)
T COG1710 8 LTARNIRELLEKIDEDLNEDVTEIYINLRPTREVIVALLENSPNVKVIGCPPSLYPKVSKKV------LKALEQMGIK 79 (139)
T ss_pred HHHHHHHHHHHHCCHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHH------HHHHHHCCCE
T ss_conf 34513999998714122244232788604548999999964998516348811326789999------9889868956
No 357
>TIGR01564 S_layer_MJ S-layer protein; InterPro: IPR006454 These sequences represent one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.; GO: 0005618 cell wall.
Probab=22.80 E-value=55 Score=13.67 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCE----EECCCCCCCCCEEEEECHHHCCHHHH
Q ss_conf 5518851665635789999997099799983-2676763210----00024545574289952132033668
Q gi|254780409|r 159 SNLMVVSPDVGGVVRARALAKRLGCLLAIVD-KRREHPGKIE----VMNIIGKVEGKDCILIDDIVDTGGTL 225 (310)
Q Consensus 159 ~~~vVVaPD~G~~~ra~~~a~~L~~~~~~~~-K~R~~~~~v~----~~~~~gdV~gr~vIIVDDii~TGgTi 225 (310)
.|+++|+=. =+=+.++.+++.+++++.+-+ |++..+|-.+ ...+-|...|.+|++|=- -|.-+|-
T Consensus 547 knLiLVGGP-VaNkltkeLaDagk~~~tYDeWkekfGtGa~~sp~~~~~~~g~~nG~dVlvVAG-gDRe~Tr 616 (626)
T TIGR01564 547 KNLILVGGP-VANKLTKELADAGKVELTYDEWKEKFGTGAESSPATLAVVAGAANGYDVLVVAG-GDREGTR 616 (626)
T ss_pred CCEEEECCH-HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEEC-CCHHHHH
T ss_conf 454885770-478899987521487454356655406884422120020277438944899866-9848999
No 358
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=55 Score=13.67 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6772699515835776525886200010377778765305855518851665-6357899999970997999832676
Q gi|254780409|r 117 GADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDV-GGVVRARALAKRLGCLLAIVDKRRE 193 (310)
Q Consensus 117 G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~-G~~~ra~~~a~~L~~~~~~~~K~R~ 193 (310)
-+.+++++-.+++--.=.+.-.-+. + + ..-.|+.+++|-- |-.-.|+.+|+.|++||++.+.+--
T Consensus 68 ~AKKvLsVAVYNHYKRl~~~~~~~d----------v-E-L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 68 QAKKVLSVAVYNHYKRLNNKEDNDD----------V-E-LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHCEEEEEEEHHHHHHHCCCCCCC----------E-E-EEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCH
T ss_conf 4310346641068899860488776----------3-5-320317998889975779999999984898475144412
No 359
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10; InterPro: IPR005729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model describes the archaeal ribosomal protein and its equivalents in eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=22.59 E-value=55 Score=13.65 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=21.9
Q ss_pred EECCCCHHHH------HHHHHHHCCCEE----------EEEEEECCCCEEE
Q ss_conf 9768999999------999999589104----------4489986997078
Q gi|254780409|r 4 FAGNSNRNLA------QEICDYLHTSLG----------KASVTYFSDREVF 38 (310)
Q Consensus 4 ~~g~~~~~La------~~ia~~lg~~l~----------~~~~~~F~dGE~~ 38 (310)
+++++.+.|. +++|+.-|+.+. .+.+++-||||-.
T Consensus 7 L~s~n~~~L~~vc~qi~~iA~~tgv~~~GPvpLPtk~l~v~trk~P~GEGS 57 (99)
T TIGR01046 7 LTSTNVRSLEEVCEQIKEIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGEGS 57 (99)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEECCCCCCC
T ss_conf 615895788999999988777459555588069853578867667899986
No 360
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=22.47 E-value=55 Score=13.63 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=44.2
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE---CCCC-CCCHHHHC--
Q ss_conf 45574289952132033668889898752687521787205555716898886369989998---1788-78434740--
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVI---TDSI-QPTDLVKS-- 279 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~---TnTi-~~~~~~~~-- 279 (310)
+++|| |++|=-.||||= .+.+.+.||++||++=.= -+.--++|.+ .++|.+ ||== .-.+....
T Consensus 75 ~vk~k--i~lD~GsS~GGF----td~aL~~GAk~VY~vDVG---~~ql~~kLR~--D~Rv~~~eR~N~rGy~T~~d~~~~ 143 (240)
T TIGR00478 75 DVKNK--IVLDVGSSTGGF----TDCALQKGAKEVYGVDVG---YNQLAEKLRQ--DERVKVLERTNIRGYVTPADIVKD 143 (240)
T ss_pred EECCE--EEEEECCCCCHH----HHHHHHCCCCEEEEEEEC---CHHHHHHCCC--CCEEEEEECCCCCCCCCHHHHHCC
T ss_conf 33786--899705673048----999987058467778603---2133432363--662689645787444665654078
Q ss_pred --CCCEEEEECHHH
Q ss_conf --798599811799
Q gi|254780409|r 280 --SAKIRILTIAQL 291 (310)
Q Consensus 280 --~~ki~visva~l 291 (310)
-|.+-++|||=+
T Consensus 144 qP~P~lA~~DvSFi 157 (240)
T TIGR00478 144 QPMPDLAVVDVSFI 157 (240)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 88973144445788
No 361
>PRK08227 aldolase; Validated
Probab=22.41 E-value=56 Score=13.62 Aligned_cols=14 Identities=7% Similarity=0.237 Sum_probs=6.6
Q ss_pred HHHHH-HHCCCCCCH
Q ss_conf 99998-718887313
Q gi|254780409|r 294 EAINR-TFEERSISS 307 (310)
Q Consensus 294 ~aI~~-i~~~~Svs~ 307 (310)
+||.+ +|.+.|+.+
T Consensus 267 ~Al~~iVHe~~s~~e 281 (291)
T PRK08227 267 KAVHAVVHHNETAKE 281 (291)
T ss_pred HHHHHHHCCCCCHHH
T ss_conf 999998659999999
No 362
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=22.40 E-value=56 Score=13.62 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHHEECCCCEEEEECCC------CHHHHHHCC--------CCCEECCHHHHHHHHHHHH
Q ss_conf 7776520000267726995158------357765258--------8620001037777876530
Q gi|254780409|r 106 AKLVANLITQAGADRVIMLDLH------AGQVQGFFD--------IPTDNLYALPILERDIKER 155 (310)
Q Consensus 106 ak~~a~ll~~~G~d~vit~DlH------~~~~~~~F~--------ip~~nl~~~~~l~~~l~~~ 155 (310)
.+-+=..++++ -|.|+++|.+ +++.+..|. -|+.||...|.+.+|+...
T Consensus 97 ~~rfr~~~eal-pDavvv~d~~g~I~~~N~aAe~l~G~~~~~~~G~~I~~Lir~p~f~~~~~~~ 159 (431)
T PRK11006 97 IKRFRSGAESL-PDAVVLTTEEGNIFWCNGLAQQLLGLRWPEDNGQNILNLLRYPEFTQYLKTR 159 (431)
T ss_pred HHHHHHHHHHC-CCEEEEECCCCCEEEEHHHHHHHHCCCCHHHCCCCHHHHHCCHHHHHHHHCC
T ss_conf 99999999648-9769999899958835699999838998332699778980884599998626
No 363
>PRK00886 2-phosphosulfolactate phosphatase; Provisional
Probab=22.38 E-value=56 Score=13.62 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=6.9
Q ss_pred CCCCCEEEEECHHHCCHHH
Q ss_conf 4557428995213203366
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGT 224 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgT 224 (310)
+++||.+|+ ..|-||
T Consensus 92 ~~~gk~lvl----tTtNGT 106 (240)
T PRK00886 92 VVEGKRLFM----TTTNGT 106 (240)
T ss_pred HCCCCEEEE----ECCCHH
T ss_conf 417986999----889578
No 364
>KOG0399 consensus
Probab=22.25 E-value=52 Score=13.84 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=16.9
Q ss_pred CCCCCEEEEECHHHCCHHHHHHHHH
Q ss_conf 4557428995213203366888989
Q gi|254780409|r 206 KVEGKDCILIDDIVDTGGTLCGAAD 230 (310)
Q Consensus 206 dV~gr~vIIVDDii~TGgTi~~aa~ 230 (310)
|+++|.|+=+|--+.||.-+.-|+-
T Consensus 1165 dLR~rvVlqtDGqlrtG~DV~iAal 1189 (2142)
T KOG0399 1165 DLRGRVVLQTDGQLRTGRDVAIAAL 1189 (2142)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 6130279983685023368999998
No 365
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=22.15 E-value=56 Score=13.59 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=53.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCCCCC-CCCHHHHHHHHHHE--ECCCCEEE
Q ss_conf 8970899859788804679999999999986172001131023301103431125-65214777652000--02677269
Q gi|254780409|r 46 RGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRITGVIPYFGYCRQDRKPSP-RTPISAKLVANLIT--QAGADRVI 122 (310)
Q Consensus 46 rg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~~~~-~e~isak~~a~ll~--~~G~d~vi 122 (310)
.|++++|+.|+.|. .|-+.+ ..||++|+.|- |-.-.-|+. +.. =..++-..+++-.+ +-.+|-++
T Consensus 1 ~gk~glVvGS~~PW-----vE~~aL-----~~GA~~vlTvE-Yn~l~i~~~-~~~rlssi~p~ef~~~~~~~~~~FD~a~ 68 (177)
T pfam03269 1 DGKSGVVIGSMQPW-----VEVSAL-----QNGASKILTVE-YNKLTIQEE-FRDRLSSILPTDFAKNFKKYAESFDFAA 68 (177)
T ss_pred CCCEEEEECCCCHH-----HHHHHH-----HCCCCCEEEEE-ECCCCCCCH-HHHCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 99518998477539-----999999-----81887348997-235556613-3210011568899999875235323899
Q ss_pred EECCCCHHHHHHCCCCCE---ECCHHHHHHHHHHH
Q ss_conf 951583577652588620---00103777787653
Q gi|254780409|r 123 MLDLHAGQVQGFFDIPTD---NLYALPILERDIKE 154 (310)
Q Consensus 123 t~DlH~~~~~~~F~ip~~---nl~~~~~l~~~l~~ 154 (310)
++---.+.-.|-|.-|.| ++.++..+...++.
T Consensus 69 SfSSiEH~GLGRYGDpidp~Gdlk~m~~i~~~Lk~ 103 (177)
T pfam03269 69 SFSSIEHSGLGRYGDPIDPIGDLREMLKIKCVLKK 103 (177)
T ss_pred EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 96124440565568977985109999999986178
No 366
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=22.14 E-value=56 Score=13.59 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=36.0
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC--CCCHHHHHHHHHCCCC
Q ss_conf 55742899521320336688898987526875217872055--5571689888636998
Q gi|254780409|r 207 VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHG--VLSSSSIERIEKSKMK 263 (310)
Q Consensus 207 V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THg--ifs~~a~e~l~~s~i~ 263 (310)
.+|-+..+-=.=|+-=|.---+++.|-+.|.++|+++..-+ .-+++...+|.+++|+
T Consensus 66 a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~ 124 (146)
T COG0117 66 ARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIE 124 (146)
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCE
T ss_conf 57878999724766689996457999970988899995289930168469999976986
No 367
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=21.99 E-value=57 Score=13.57 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=40.7
Q ss_pred EECCCCHHHHHHHHHHHCCCEEEEEEEEC--CCCEE-------EEEECCCCCCCEEEEECCCCCCC-HHHHHHHH
Q ss_conf 97689999999999995891044489986--99707-------88856786897089985978880-46799999
Q gi|254780409|r 4 FAGNSNRNLAQEICDYLHTSLGKASVTYF--SDREV-------FVEIGENVRGEDVFIVQSTSCPA-NDYLMELL 68 (310)
Q Consensus 4 ~~g~~~~~La~~ia~~lg~~l~~~~~~~F--~dGE~-------~v~i~~~vrg~dV~ivqs~~~~~-nd~lmeLl 68 (310)
+||+.+.+.++++...-..+.-.+..++| ++||. +.+=|.|--|+||+=+|.+..|. =+.+++.+
T Consensus 24 iSG~~a~~i~~~l~~~~~~~~r~~~~~~~~d~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~il~~l 98 (445)
T PRK05291 24 ISGPDALEIAQKLFGKKLPKPRTAHYGHIYDPDGEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPVVLNLILQLL 98 (445)
T ss_pred EECHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 306609999999956899999789999998899888326999995599988778679997679759999999999
No 368
>TIGR02998 RraA_entero regulator of ribonuclease activity A; InterPro: IPR014339 This entry includes a number of closely related sequences from the gammaproteobacteria. The Escherichia coli member of this family, RraA, has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=21.92 E-value=49 Score=14.00 Aligned_cols=85 Identities=26% Similarity=0.362 Sum_probs=54.9
Q ss_pred CCCHHHHHCCCCCHHHCCCCCCCCCCHHHH-----------HHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHH
Q ss_conf 720011310233011034311256521477-----------765200002677269951583577652588620001037
Q gi|254780409|r 78 SARRITGVIPYFGYCRQDRKPSPRTPISAK-----------LVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALP 146 (310)
Q Consensus 78 ~A~~it~ViPY~~YaRqDr~~~~~e~isak-----------~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~ 146 (310)
-|..|.+|-|-|.- |-.|.++..| ++.+||++-|-+||+.+|===+-..+.-+ -
T Consensus 12 Ya~~vdVveP~F~n------fGGrssF~G~v~TvKCFE~ngLi~ell~~~G~g~VL~iDGGGs~RRaLiD---------~ 76 (161)
T TIGR02998 12 YADLVDVVEPIFSN------FGGRSSFGGKVVTVKCFEDNGLIAELLEQNGTGRVLLIDGGGSVRRALID---------A 76 (161)
T ss_pred HCCCCCCCCCEECC------CCCEECCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH---------H
T ss_conf 00310210660006------78611357568999860671478999972589338999689515578888---------9
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7778765305855518851665635789999997099
Q gi|254780409|r 147 ILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGC 183 (310)
Q Consensus 147 ~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~ 183 (310)
.||+-- -+++|+-.+|. |++.-+..+ +.|..
T Consensus 77 elA~lA-~~N~WeGivvY----GaVR~vd~l-e~lDi 107 (161)
T TIGR02998 77 ELAQLA-VENGWEGIVVY----GAVRQVDEL-EELDI 107 (161)
T ss_pred HHHHHH-HCCCCEEEEEE----CCCCCHHHH-CCCCC
T ss_conf 999998-43796059996----542441112-16550
No 369
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.62 E-value=58 Score=13.52 Aligned_cols=152 Identities=10% Similarity=0.020 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHH---HHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--CCCEEEEEC
Q ss_conf 1037777876530585551885166563-5789---999997099799983267676321000024545--574289952
Q gi|254780409|r 143 YALPILERDIKERNDISNLMVVSPDVGG-VVRA---RALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV--EGKDCILID 216 (310)
Q Consensus 143 ~~~~~l~~~l~~~~~~~~~vVVaPD~G~-~~ra---~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~gr~vIIVD 216 (310)
.....+++|+++....+..+++..|... ...+ +..+++.|..+.... +...+.......+..+ +|-++|++
T Consensus 118 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~G~~vv~~~--~~~~~~~D~~~~v~~l~~~~pd~V~~- 194 (341)
T cd06341 118 ASLTTWGDFAKDQGGTRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIV--VITATAPDPTPQAQQAAAAGADAIIT- 194 (341)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCCCHHHHHHHHHHCCCCEEEE-
T ss_conf 999999999996489848999935835889999999999997599545787--44899987789999998569699999-
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE-CCCCCCC---HH--------HHCCCC--
Q ss_conf 132033668889898752687521787205555716898886369989998-1788784---34--------740798--
Q gi|254780409|r 217 DIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSSIERIEKSKMKELVI-TDSIQPT---DL--------VKSSAK-- 282 (310)
Q Consensus 217 Dii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~i~~iv~-TnTi~~~---~~--------~~~~~k-- 282 (310)
+..+.......+.++++|-+. ..+.+++.++.+..+..... .+.++. +...|.+ +. .+..++
T Consensus 195 --~~~~~~~~~~~k~~~~~G~~~-~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~p~~~~~~~~~~~y~~~~~ 270 (341)
T cd06341 195 --VLDAAVCASVLKAVRAAGLTP-KVVLSGTCYDPALLAAPGPA-LAGVYIAVFYRPFESGTPAVALYLAAMARYAPQLD 270 (341)
T ss_pred --ECCCHHHHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHHH-HCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf --068478999999999769997-18995576788999850575-46869998437888888789999999998562358
Q ss_pred --EEE-----EECHHHHHHHHHHHHC
Q ss_conf --599-----8117999999998718
Q gi|254780409|r 283 --IRI-----LTIAQLMGEAINRTFE 301 (310)
Q Consensus 283 --i~v-----isva~llA~aI~~i~~ 301 (310)
... .+-+.+++++|++.-.
T Consensus 271 ~~~~~~~~~gy~aa~~l~~ai~~aG~ 296 (341)
T cd06341 271 PPEQGFALIGYIAADLFLRGLSGAGG 296 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99867999999999999999998487
No 370
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=21.43 E-value=58 Score=13.49 Aligned_cols=160 Identities=11% Similarity=0.157 Sum_probs=82.6
Q ss_pred HHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCC--CC
Q ss_conf 52588620001037777876530585551885166563-5789999997099799983267676321000024545--57
Q gi|254780409|r 133 GFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGG-VVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKV--EG 209 (310)
Q Consensus 133 ~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~-~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV--~g 209 (310)
.+|.....+-.....+++|+++. ..+++.++++|-.. ...+..+.+.++....... ....+.......+..+ .+
T Consensus 110 ~~f~~~~~~~~~~~~~~~~~~~~-g~k~vail~~d~~~G~~~~~~~~~~~~~~vv~~~--~~~~~~~Dfs~~v~~i~~a~ 186 (333)
T cd06359 110 YFFSTSWQNDQVHEAMGKYAQDK-GYKRVFLIAPNYQAGKDALAGFKRTFKGEVVGEV--YTKLGQLDFSAELAQIRAAK 186 (333)
T ss_pred CEEEECCCHHHHHHHHHHHHHHC-CCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEE--ECCCCCCCHHHHHHHHHHCC
T ss_conf 47998177489999999999865-8872599924764779999999998258567788--65799864699999998769
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC---HH--------H
Q ss_conf 42899521320336688898987526875-217872055557168988863699899981788784---34--------7
Q gi|254780409|r 210 KDCILIDDIVDTGGTLCGAADALYEQGAL-SVTAYITHGVLSSSSIERIEKSKMKELVITDSIQPT---DL--------V 277 (310)
Q Consensus 210 r~vIIVDDii~TGgTi~~aa~~Lk~~GA~-~V~~~~THgifs~~a~e~l~~s~i~~iv~TnTi~~~---~~--------~ 277 (310)
-++|++ ...|+......+.+++.|-+ ++..+.+.+.......+...+ ....++.+..-.+. +. .
T Consensus 187 pD~v~~---~~~~~~~~~~~~q~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~p~~~~f~~~y~ 262 (333)
T cd06359 187 PDAVFV---FLPGGMGVNFVKQYRQAGLKKDIPLYSPGFSDEEDTLPAVGD-AALGLYNTAQWAPDLDNPANKKFVADFE 262 (333)
T ss_pred CCEEEE---ECCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH-HCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 799999---347615899999999759977774587446576889974454-2067599740377789877899999999
Q ss_pred HCCCC------EEEEECHHHHHHHHHHH
Q ss_conf 40798------59981179999999987
Q gi|254780409|r 278 KSSAK------IRILTIAQLMGEAINRT 299 (310)
Q Consensus 278 ~~~~k------i~visva~llA~aI~~i 299 (310)
+...+ ..-.+...++++||++.
T Consensus 263 ~~~g~~p~~~a~~~Ydav~~l~~Ai~~a 290 (333)
T cd06359 263 KKYGRLPTLYAAQAYDAAQLLDSAVRKV 290 (333)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9878799727899999999999999983
No 371
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.33 E-value=58 Score=13.48 Aligned_cols=71 Identities=25% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 89999999999995891044489986997078885678689708998597888046799999999999861720011
Q gi|254780409|r 7 NSNRNLAQEICDYLHTSLGKASVTYFSDREVFVEIGENVRGEDVFIVQSTSCPANDYLMELLIMIDAVRRSSARRIT 83 (310)
Q Consensus 7 ~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~~~vrg~dV~ivqs~~~~~nd~lmeLl~~~~a~k~~~A~~it 83 (310)
-+|...|+.++.+|. .++. ....+.|.+...--...+...||+|+=|..+.. -|++.+++.+|+.|++-|.
T Consensus 9 G~S~~va~~~~~kl~-r~G~-~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T----~e~~~~~~~ak~~g~~vI~ 79 (128)
T cd05014 9 GKSGHIARKIAATLS-STGT-PAFFLHPTEALHGDLGMVTPGDVVIAISNSGET----DELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred CHHHHHHHHHHHHHH-HCCC-CEEECCCHHHHHCCCCCCCCCCEEEEEECCCCC----HHHHHHHHHHHHCCCCEEE
T ss_conf 679999999999999-5799-457547315554113477899999999799998----6799999999863785899
No 372
>pfam02084 Bindin Bindin.
Probab=21.33 E-value=58 Score=13.48 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=33.2
Q ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCH--HHHHHHHHHHHC
Q ss_conf 330110343112565214777652000026772699515835776525886200010--377778765305
Q gi|254780409|r 88 YFGYCRQDRKPSPRTPISAKLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYA--LPILERDIKERN 156 (310)
Q Consensus 88 Y~~YaRqDr~~~~~e~isak~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~--~~~l~~~l~~~~ 156 (310)
|=-||...- ....+.||||++-++-...|+++| +.|||-=++ .-+|.++|+.+.
T Consensus 84 ~~d~Ssss~-~e~etTIsAkvm~~IKAVLGATKI--------------DLPVDINDPYDLGLLLRHLRHHS 139 (239)
T pfam02084 84 FDDYSSSSI-EEGDTTISADVMEKIKAVLGATKI--------------DLPVDINDPYDLGLLLRHLRHHS 139 (239)
T ss_pred CCCCCCCCC-CCCCCEEEHHHHHHHHHHHCCCCC--------------CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 554332223-478753509999989998575434--------------67443687336789999988777
No 373
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=21.23 E-value=59 Score=13.47 Aligned_cols=106 Identities=11% Similarity=-0.001 Sum_probs=64.4
Q ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHCCC---CEEEEECCCCCCC--CCEEECCCCCCCCCEEEEECHHHCCHHHHHHH
Q ss_conf 305855518851665635789999997099---7999832676763--21000024545574289952132033668889
Q gi|254780409|r 154 ERNDISNLMVVSPDVGGVVRARALAKRLGC---LLAIVDKRREHPG--KIEVMNIIGKVEGKDCILIDDIVDTGGTLCGA 228 (310)
Q Consensus 154 ~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~---~~~~~~K~R~~~~--~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~a 228 (310)
+.++|+..+++.-+.-|.-|.+.+-+.... ++. +.+-..... +-......-+-++...||+|=-.++...+.+-
T Consensus 120 ~~~~W~~f~iiYdsd~gL~rLq~ll~~~~~~~~~v~-~r~~~~~~d~~~~r~~Lkei~~~~~~~IIlDc~~e~~~~iL~q 198 (372)
T cd06387 120 AHYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVT-ARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQ 198 (372)
T ss_pred HHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEE-EEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
T ss_conf 967987899999682779999999987640597699-9980577872568999999763476279998988999999999
Q ss_pred HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 898752687521787205555716898886369
Q gi|254780409|r 229 ADALYEQGALSVTAYITHGVLSSSSIERIEKSK 261 (310)
Q Consensus 229 a~~Lk~~GA~~V~~~~THgifs~~a~e~l~~s~ 261 (310)
+..+.-.+..--|...+-.+.+-+ ++.+..++
T Consensus 199 a~~~gm~~~~yhyilt~Ld~~~~d-Le~~~~~~ 230 (372)
T cd06387 199 VVILGKHSRGYHYMLANLGFTDIS-LERVMHGG 230 (372)
T ss_pred HHHHCCCCCCEEEEECCCCCCCCC-HHHCCCCC
T ss_conf 998222457527998147546664-54433677
No 374
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.20 E-value=59 Score=13.46 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=74.8
Q ss_pred HHHHHHHEECCCCEEEEECCCCHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 77652000026772699515835776525886200010377778765305855518851665635789999997099799
Q gi|254780409|r 107 KLVANLITQAGADRVIMLDLHAGQVQGFFDIPTDNLYALPILERDIKERNDISNLMVVSPDVGGVVRARALAKRLGCLLA 186 (310)
Q Consensus 107 k~~a~ll~~~G~d~vit~DlH~~~~~~~F~ip~~nl~~~~~l~~~l~~~~~~~~~vVVaPD~G~~~ra~~~a~~L~~~~~ 186 (310)
..+++.++.+|+|- +++++.+|...+.-.---.+......+.+++++..+..=.+=++||.....-....+...|++-.
T Consensus 105 ~~~~~~~~~~gad~-ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~~~~~Pi~vKlsP~~~~i~~ia~~~~~~g~dgi 183 (296)
T cd04740 105 VEVAEKLADAGADA-IELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGL 183 (296)
T ss_pred HHHHHHHHHCCCCE-EEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 99999988648988-99978899867636775749999999999998604896699718980009999999997699889
Q ss_pred E-EECCCCCCCCCEE-----ECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHHHHHHH
Q ss_conf 9-8326767632100-----002454557428995213203366888989875268752178720555571-68988863
Q gi|254780409|r 187 I-VDKRREHPGKIEV-----MNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSS-SSIERIEK 259 (310)
Q Consensus 187 ~-~~K~R~~~~~v~~-----~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~-~a~e~l~~ 259 (310)
+ ..-.....-+.+. ....|-+.|+-.- ..-.+.+..+++.- ++-.+.+=|++++ +++|+|.
T Consensus 184 v~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~---------~~al~~v~~~~~~~--~ipIig~GGI~s~~da~e~i~- 251 (296)
T cd04740 184 TLINTLKGMAIDIETRKPILGNVTGGLSGPAIK---------PIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLM- 251 (296)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH---------HHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHH-
T ss_conf 997467876636444675524557876867788---------99999999998545--888797579799999999998-
Q ss_pred CC--CCEEEECCCCCCC
Q ss_conf 69--9899981788784
Q gi|254780409|r 260 SK--MKELVITDSIQPT 274 (310)
Q Consensus 260 s~--i~~iv~TnTi~~~ 274 (310)
+| +-++++ .+.+.
T Consensus 252 aGAs~VQi~T--ai~~G 266 (296)
T cd04740 252 AGASAVQVGT--ANFVD 266 (296)
T ss_pred CCCCHHHHHH--HHHCC
T ss_conf 3998887236--67429
No 375
>PRK07094 biotin synthase; Provisional
Probab=21.07 E-value=59 Score=13.45 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCHHHCCCC--------CCCCCCHHH------HHHHHHHEECCCCEEEEECCCCHHH
Q ss_conf 99999999986172001131023301103431--------125652147------7765200002677269951583577
Q gi|254780409|r 66 ELLIMIDAVRRSSARRITGVIPYFGYCRQDRK--------PSPRTPISA------KLVANLITQAGADRVIMLDLHAGQV 131 (310)
Q Consensus 66 eLl~~~~a~k~~~A~~it~ViPY~~YaRqDr~--------~~~~e~isa------k~~a~ll~~~G~d~vit~DlH~~~~ 131 (310)
|.+-.+..+++.|++++.+.--.-++...|+. ..++-.+++ .--++.|..+|+|+.. +.+ .-.-
T Consensus 74 eI~~~A~~a~~~G~~~~~lqsG~~~~~~~e~~~~ii~~Ik~~~~l~i~lSlG~l~~e~~~~Lk~AG~dry~-~nl-ETs~ 151 (323)
T PRK07094 74 EILECAKKAYELGYGTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYL-LRH-ETAD 151 (323)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEE-CCC-CCCC
T ss_conf 99999999998699889996489988669999999999860599459975787999999999985977441-245-6569
Q ss_pred HHHCC-C-CCEECCHHHHHHHHHHHH-CCCCCEEEEE-CCCCHHHHHHHHH--HHCCCC
Q ss_conf 65258-8-620001037777876530-5855518851-6656357899999--970997
Q gi|254780409|r 132 QGFFD-I-PTDNLYALPILERDIKER-NDISNLMVVS-PDVGGVVRARALA--KRLGCL 184 (310)
Q Consensus 132 ~~~F~-i-p~~nl~~~~~l~~~l~~~-~~~~~~vVVa-PD~G~~~ra~~~a--~~L~~~ 184 (310)
..+|+ + |..+..-.-...+++++. ...---.+++ |...-..|+..+. +.|+.+
T Consensus 152 ~~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~edr~~~l~~LreL~~~ 210 (323)
T PRK07094 152 RELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLD 210 (323)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 89867758999989999999999983981043027798999999999999999837998
No 376
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase; InterPro: IPR012703 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. 2-Aminoethylphosphonate (AEP), the most common naturally occurring phosphonate, is an important precursor used in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans. This entry represents 2-aminoethylphosphonate-pyruvate transaminase (AEPT)(2.6.1.37 from EC) which catalyses the interconversion of AEP and phosphonoacetaldehyde (P-Ald), coupled with the interconversion of pryuvate and L-alanine. In some bacterial species this is the first step in an AEP degradation pathway which allows them to utilise this compound as a source of carbon, nitrogen and phosphorus. Phosphonoacetaldeyhde hydrolase, often encoded by an adjacent gene, then converts P-Ald to acetaldehyde and phosphate.Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lyase complex as found in Escherichia coli. The crystal structure of AEPT from Salmonella typhimurium has been studied to 2.2 A resolution . The protein is a homodimer where each subunit is composed of two domains, large and small. The large domain forms an alpha-beta complex characteristic of the aspartate transaminase family, while the small domain is comosed of highly twisted beta strands. The active site contains a pyridoxal 5'-phosphate cofactor and is found at the domain interface, being composed of residues from both subunits..
Probab=21.01 E-value=36 Score=14.89 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=12.4
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 885166563578999999709979998
Q gi|254780409|r 162 MVVSPDVGGVVRARALAKRLGCLLAIV 188 (310)
Q Consensus 162 vVVaPD~G~~~ra~~~a~~L~~~~~~~ 188 (310)
++|..+--=-+|-..+|+.|+.|+..+
T Consensus 84 lLv~~NGAYG~R~~~ia~~l~i~~~~~ 110 (366)
T TIGR02326 84 LLVVINGAYGKRIAQIAEYLQIPHHVV 110 (366)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEE
T ss_conf 899717853478999999847861675
No 377
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=20.86 E-value=60 Score=13.42 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCCCC--CCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 02454--5574289952132033668889898752687521787
Q gi|254780409|r 202 NIIGK--VEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAY 243 (310)
Q Consensus 202 ~~~gd--V~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~ 243 (310)
.+.|+ ++|++++|+ --|.+-.-++++|+++|..+|.++
T Consensus 176 ~ifG~erL~~~~~Lli----GAGeMg~Lva~~L~~~~v~~~~i~ 215 (436)
T TIGR01035 176 KIFGSERLKGKKVLLI----GAGEMGELVAKHLREKGVGKVLIA 215 (436)
T ss_pred HHHCCCCCCCCEEEEE----ECCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8725621166418998----274579999999964895289885
No 378
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.78 E-value=60 Score=13.41 Aligned_cols=147 Identities=13% Similarity=0.113 Sum_probs=66.8
Q ss_pred HHHHHHHHHEECCCCEEEEECCCCHHHHHHCCC----------CCEEC------------CH----HHHHHHHHHHHCCC
Q ss_conf 477765200002677269951583577652588----------62000------------10----37777876530585
Q gi|254780409|r 105 SAKLVANLITQAGADRVIMLDLHAGQVQGFFDI----------PTDNL------------YA----LPILERDIKERNDI 158 (310)
Q Consensus 105 sak~~a~ll~~~G~d~vit~DlH~~~~~~~F~i----------p~~nl------------~~----~~~l~~~l~~~~~~ 158 (310)
....+-++|+.+|.+-++.-|+-+ .+-+.|+. +++.| .. ....+++++++++.
T Consensus 169 D~~eik~ll~~~Gl~~~vlpd~s~-sldg~~~~~~~~~~~ggt~~~~i~~~~~a~a~l~~~~~~~~~~~~a~~Le~~~gi 247 (429)
T cd03466 169 DIREIKEILREFGIEYILLPDTSE-TLDGPFWGEYHRLPSGGTPISEIKGMGGAKATIELGMFVDHGLSAGSYLEEEFGI 247 (429)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCC-CCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 699999999982995797146422-4567777851342599986999996526816999763417678999999998699
Q ss_pred CCEEEEECCCCHH----HHHHHHHHHCCCCEEE-EECCCCCCCCCEE-ECCCCCCCCCEEEEECHHHCCHHHHHHHHHHH
Q ss_conf 5518851665635----7899999970997999-8326767632100-00245455742899521320336688898987
Q gi|254780409|r 159 SNLMVVSPDVGGV----VRARALAKRLGCLLAI-VDKRREHPGKIEV-MNIIGKVEGKDCILIDDIVDTGGTLCGAADAL 232 (310)
Q Consensus 159 ~~~vVVaPD~G~~----~ra~~~a~~L~~~~~~-~~K~R~~~~~v~~-~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~L 232 (310)
. .+.+ |-.-|+ ++.+.+++.+|.+..- +.++|. .-... ....--..||.+.|+ .-+......++.|
T Consensus 248 P-~~~~-~~p~Gi~~t~~fl~~l~~~~g~~~~e~i~~er~--r~~d~~~d~~~~~~gkr~ai~----~~~~~~~~~~~~l 319 (429)
T cd03466 248 P-NYRL-PLPIGLRATDEFMSLLSKLTGKPIPEKYTRERG--RLLDAMIDAHKYNFGRKAAIY----GEPDFVVAITRFV 319 (429)
T ss_pred C-EEEE-CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEE----ECCHHHHHHHHHH
T ss_conf 8-5871-455159999999999999858972699999999--999999998650358679999----5736699999999
Q ss_pred HHCCCCCEEEEEECCC-CCHHHHHHHHHC
Q ss_conf 5268752178720555-571689888636
Q gi|254780409|r 233 YEQGALSVTAYITHGV-LSSSSIERIEKS 260 (310)
Q Consensus 233 k~~GA~~V~~~~THgi-fs~~a~e~l~~s 260 (310)
.|.|..-+.+++..+- .....++++...
T Consensus 320 ~ElG~~~~~v~t~~~~~~~~~~~~~~~~~ 348 (429)
T cd03466 320 LENGMVPVLIATGSESKKLKEKLEEDLKE 348 (429)
T ss_pred HHCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 98799789998389867789999999974
No 379
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.49 E-value=61 Score=13.37 Aligned_cols=156 Identities=19% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHHHHEECCCCEEEEE--CCCCHHHHHHCCCCCEECC---HHHHHHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHH
Q ss_conf 7776520000267726995--1583577652588620001---03777787653058555188516--656357899999
Q gi|254780409|r 106 AKLVANLITQAGADRVIML--DLHAGQVQGFFDIPTDNLY---ALPILERDIKERNDISNLMVVSP--DVGGVVRARALA 178 (310)
Q Consensus 106 ak~~a~ll~~~G~d~vit~--DlH~~~~~~~F~ip~~nl~---~~~~l~~~l~~~~~~~~~vVVaP--D~G~~~ra~~~a 178 (310)
...+-+||+.+|++-+.++ |---.+++..-+-...-+. ...-+++++.++++. +.+-++| =.+-.+|-+.+|
T Consensus 187 ~~~i~~lL~~mGi~V~~~~tgd~t~~di~~~~~A~lNvv~C~~~~~~~A~~le~~yGi-P~~~~~f~Gi~~T~~~Lr~IA 265 (421)
T cd01976 187 AWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGI-PWMEYNFFGPTKIAESLRKIA 265 (421)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHHHHHH
T ss_conf 9999999998398379998089979999732007699885357999999999998698-969515658799999999999
Q ss_pred HHCCCCEEEEECCCC--CCCCC----EEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH
Q ss_conf 970997999832676--76321----000024545574289952132033668889898752687521787205555716
Q gi|254780409|r 179 KRLGCLLAIVDKRRE--HPGKI----EVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSS 252 (310)
Q Consensus 179 ~~L~~~~~~~~K~R~--~~~~v----~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~ 252 (310)
+.+|.+ +.++... ...+. .....--.++||.|.|.=+ |...-..++.+++.|-.-|-+...-+ ..+
T Consensus 266 ~~fG~e--l~~~~E~lI~~e~~~~~~~l~~yr~~L~GKrv~i~~G----g~~~~~~i~~~~eLGmevV~~g~~~~--~~~ 337 (421)
T cd01976 266 AYFDDE--ITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVG----GLRPRHYIGAYEDLGMEVVGTGYEFA--HRD 337 (421)
T ss_pred HHHCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC----CCCHHHHHHHHHHCCCEEEEEEEECC--CHH
T ss_conf 985908--8899999999999999999999998708988999899----87468999999987988999731227--476
Q ss_pred HHHHHHH-CCCCEEEECCC
Q ss_conf 8988863-69989998178
Q gi|254780409|r 253 SIERIEK-SKMKELVITDS 270 (310)
Q Consensus 253 a~e~l~~-s~i~~iv~TnT 270 (310)
-.+++.. .+-..+++.|.
T Consensus 338 Dye~~~~~~~~~~~iidd~ 356 (421)
T cd01976 338 DYERTEVIPKEGTLLYDDV 356 (421)
T ss_pred HHHHHHHHCCCCCEEEECC
T ss_conf 7999985089882897279
No 380
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.44 E-value=61 Score=13.36 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH------CCCCEEEECCCC
Q ss_conf 688898987526875217872055557168988863------699899981788
Q gi|254780409|r 224 TLCGAADALYEQGALSVTAYITHGVLSSSSIERIEK------SKMKELVITDSI 271 (310)
Q Consensus 224 Ti~~aa~~Lk~~GA~~V~~~~THgifs~~a~e~l~~------s~i~~iv~TnTi 271 (310)
+..+|-..|+++|-++|.+--+| ++.|.-.++|.+ .+++++.+.+.+
T Consensus 57 ~p~eaL~~L~~~G~~~V~VQslh-ii~G~Ey~~l~~~v~~~~~~f~~i~~g~PL 109 (127)
T cd03412 57 TPEEALAKLAADGYTEVIVQSLH-IIPGEEYEKLKREVDAFKKGFKKIKLGRPL 109 (127)
T ss_pred CHHHHHHHHHHCCCCEEEEEECC-EECCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999998799889994463-667587999999999974579679970567
No 381
>pfam00162 PGK Phosphoglycerate kinase.
Probab=20.41 E-value=61 Score=13.36 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 6688898987526875217872055557
Q gi|254780409|r 223 GTLCGAADALYEQGALSVTAYITHGVLS 250 (310)
Q Consensus 223 gTi~~aa~~Lk~~GA~~V~~~~THgifs 250 (310)
.|+..-.+.+++ |+.|++-..-|+|-
T Consensus 299 ~Ti~~~~~~I~~--aktI~wNGP~GvfE 324 (383)
T pfam00162 299 KTIELFAEVIKD--AKTVVWNGPMGVFE 324 (383)
T ss_pred HHHHHHHHHHHH--CCEEEEECCCCCCC
T ss_conf 999999999987--89999978825443
No 382
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.41 E-value=61 Score=13.36 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=7.8
Q ss_pred HHHHHHHHHHEECCCC
Q ss_conf 1477765200002677
Q gi|254780409|r 104 ISAKLVANLITQAGAD 119 (310)
Q Consensus 104 isak~~a~ll~~~G~d 119 (310)
|.-++++.||+..|++
T Consensus 103 iGkniv~~~l~~~Gf~ 118 (213)
T cd02069 103 IGKNLVGVILSNNGYE 118 (213)
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 2189999999978966
No 383
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=20.41 E-value=61 Score=13.36 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=42.4
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH---HHHHHHCCCCEEEECC--CCCCC-----HHH
Q ss_conf 5742899521320336688898987526875217872055557168---9888636998999817--88784-----347
Q gi|254780409|r 208 EGKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYITHGVLSSSS---IERIEKSKMKELVITD--SIQPT-----DLV 277 (310)
Q Consensus 208 ~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THgifs~~a---~e~l~~s~i~~iv~Tn--Ti~~~-----~~~ 277 (310)
+|-|+++ |...++.++..+.+.++..|- +..+ |+..++. +..+....+. +..+. +.... ...
T Consensus 231 ~G~Dvvi--d~~G~~~~~~~~~~~l~~gG~--vv~~---G~~~~~~~i~~~~~~~k~l~-i~G~~g~~~~~~~~~~~~l~ 302 (341)
T PRK05396 231 EGFDVGL--EMSGAPSAFRQMLDAMNHGGR--IAML---GIPPGDMSIDWNKVIFKGLT-IKGIYGREMFETWYKMAALL 302 (341)
T ss_pred CCCEEEE--ECCCCHHHHHHHHHHHHCCCE--EEEE---ECCCCCCCCCHHHHHHCCCE-EEEEECCCHHHHHHHHHHHH
T ss_conf 9976999--878989999999998635989--9999---55799875079999866838-99985510577899999999
Q ss_pred ----HCCCCE-EEEECHHHHHHHHHHHHCCCCCC
Q ss_conf ----407985-99811799999999871888731
Q gi|254780409|r 278 ----KSSAKI-RILTIAQLMGEAINRTFEERSIS 306 (310)
Q Consensus 278 ----~~~~ki-~visva~llA~aI~~i~~~~Svs 306 (310)
...+-+ ++.+... +.+|++.+..++..-
T Consensus 303 ~~g~~~~~lIt~~f~Lee-~~eA~~~~~~g~~gK 335 (341)
T PRK05396 303 QSGLDLSPIITHRFPIDD-FQKGFEAMRSGQSGK 335 (341)
T ss_pred HCCCCCCCEEEEEEEHHH-HHHHHHHHHCCCCCE
T ss_conf 779998743635988999-999999997799717
No 384
>PRK04435 hypothetical protein; Provisional
Probab=20.40 E-value=61 Score=13.35 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 563578999999709979998326767632100002454557428995213203366888989875268752178
Q gi|254780409|r 168 VGGVVRARALAKRLGCLLAIVDKRREHPGKIEVMNIIGKVEGKDCILIDDIVDTGGTLCGAADALYEQGALSVTA 242 (310)
Q Consensus 168 ~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~ 242 (310)
.|.++-...-.++-|..-..++|-||. +.+.....+||.+-+.=.+=|.-|++.+.-+.+-+.||.=.+.
T Consensus 30 ~g~~~~i~EAvk~vGISRSafYKYKD~-----VFpf~e~~~~r~iTl~l~l~d~~G~LS~vL~~ia~~~~NILTI 99 (146)
T PRK04435 30 SGKVKSITEAVKQVGISRSAFYKYKDY-----VFPFDEMSKGRIITLSLLLEDRVGTLSKVLNVIAELGGNILTI 99 (146)
T ss_pred CCCCCCHHHHHHHHCCCHHHEECCCCC-----CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 389774999999839652101123662-----1064535677689999998388757999999999769978997
No 385
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=20.32 E-value=61 Score=13.34 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=44.6
Q ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHH---HHHHHHCCCCEEEECCCCCCCH
Q ss_conf 7428995213203366888989875268752178720-55557168---9888636998999817887843
Q gi|254780409|r 209 GKDCILIDDIVDTGGTLCGAADALYEQGALSVTAYIT-HGVLSSSS---IERIEKSKMKELVITDSIQPTD 275 (310)
Q Consensus 209 gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~T-Hgifs~~a---~e~l~~s~i~~iv~TnTi~~~~ 275 (310)
+..+.++||---+-..+.++.+.+++...++++++.. +|==.... +-++.....+.+++|+--|..|
T Consensus 11 ~~~~~vi~DyaHnp~~~~a~l~~~~~~~~~r~i~V~G~~g~r~~~~r~~~g~~a~~~ad~viit~~~p~~E 81 (87)
T pfam02875 11 NNGVLVIDDYAHNPDALEAALQALKELFDGRLILVFGAGGDRDAEFHALLGALAAALADVVILTGDYPRAE 81 (87)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 89978999678996999999999986268878999999888867899999999997199999999889998
No 386
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=20.26 E-value=61 Score=13.34 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 55571689888636998999817887
Q gi|254780409|r 247 GVLSSSSIERIEKSKMKELVITDSIQ 272 (310)
Q Consensus 247 gifs~~a~e~l~~s~i~~iv~TnTi~ 272 (310)
|+--..-++.+...|++.+++..-++
T Consensus 189 GV~g~Edlel~~~~Gv~gvLvaTalh 214 (229)
T COG1411 189 GVGGMEDLELLLGMGVSGVLVATALH 214 (229)
T ss_pred CCCCHHHHHHHHCCCCCEEEEHHHHH
T ss_conf 75857778998617985465433565
No 387
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=20.10 E-value=62 Score=13.33 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCH
Q ss_conf 8804679999999999986172001131023301
Q gi|254780409|r 58 CPANDYLMELLIMIDAVRRSSARRITGVIPYFGY 91 (310)
Q Consensus 58 ~~~nd~lmeLl~~~~a~k~~~A~~it~ViPY~~Y 91 (310)
.|..-++-|+..--++++++|. .|+.+-|==++
T Consensus 16 ~~TG~~l~El~~P~~~~~~aG~-eVd~ASp~Gg~ 48 (221)
T cd03141 16 RPTGLWLEELAHPYDVFTEAGY-EVDFASPKGGK 48 (221)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC-EEEEECCCCCC
T ss_conf 8571479999999999998798-69998689998
No 388
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=20.07 E-value=62 Score=13.31 Aligned_cols=14 Identities=14% Similarity=-0.149 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCCCE
Q ss_conf 99999999958910
Q gi|254780409|r 11 NLAQEICDYLHTSL 24 (310)
Q Consensus 11 ~La~~ia~~lg~~l 24 (310)
+=+.+.++.+|.|+
T Consensus 18 ~d~~~~~~~iGyP~ 31 (171)
T pfam02222 18 EELIEAGQELGYPC 31 (171)
T ss_pred HHHHHHHHHCCCCE
T ss_conf 99999999709978
No 389
>pfam09338 Gly_reductase Glycine/sarcosine/betaine reductase component B subunits. This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions. sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin Acetyl phosphate + NH(3) + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin.
Probab=20.04 E-value=62 Score=13.31 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEE-ECCC-CCCCC-CEEEEECHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 563578999999709979998326767632100-0024-54557-42899521320336688898987526875217872
Q gi|254780409|r 168 VGGVVRARALAKRLGCLLAIVDKRREHPGKIEV-MNII-GKVEG-KDCILIDDIVDTGGTLCGAADALYEQGALSVTAYI 244 (310)
Q Consensus 168 ~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~v~~-~~~~-gdV~g-r~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~ 244 (310)
..+..++.++|+.||++-+++.++--..-.... +... -+=+| |+|+|-|.....-|+--..+..-.+ ..+++
T Consensus 289 eR~s~~~akLa~~LgaDgvIvseEG~GNPD~Dl~m~~~k~E~~GIktV~itdE~~GrDG~sq~Lad~~p~-----adAvV 363 (428)
T pfam09338 289 ERSSSYVAKLAEMLGADGVIVSEEGFGNPDADLMMNCRKLEEKGIKTVLITDEYAGRDGASQSLADADPE-----ADAVV 363 (428)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCC-----CCEEE
T ss_conf 7789999999998599789994355889427899999999986994999710500678987723026876-----67598
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 055557168988863699899981
Q gi|254780409|r 245 THGVLSSSSIERIEKSKMKELVIT 268 (310)
Q Consensus 245 THgifs~~a~e~l~~s~i~~iv~T 268 (310)
| +|++-+.+.-++.+++|..
T Consensus 364 s----~Gn~n~~i~LP~mdkVIG~ 383 (428)
T pfam09338 364 S----CGNANEVVVLPPMDKVIGH 383 (428)
T ss_pred E----CCCCCCEEECCCCCEEECC
T ss_conf 4----3865533865870425065
Done!